Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47068 * 2 1 4 4 C 1.50701 * 109.46688 * 240.00548 * 2 1 3 5 5 H 1.08005 * 119.99816 * 275.01321 * 4 2 1 6 6 C 1.37873 * 120.00618 * 95.01659 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.89611 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89187 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46495 * 109.47193 * 120.00550 * 2 1 3 13 13 C 1.46502 * 120.00012 * 59.99841 * 12 2 1 14 14 S 1.65602 * 119.99774 * 239.99795 * 12 2 1 15 15 O 1.42099 * 106.40284 * 203.53742 * 14 12 2 16 16 O 1.42100 * 106.40102 * 336.46145 * 14 12 2 17 17 C 1.76205 * 107.21570 * 90.00166 * 14 12 2 18 18 C 1.34662 * 125.99402 * 90.00037 * 17 14 12 19 19 N 1.36875 * 106.82115 * 179.97438 * 18 17 14 20 20 C 1.46506 * 126.39738 * 179.97438 * 19 18 17 21 21 C 1.35046 * 107.20516 * 0.02562 * 19 18 17 22 22 N 1.30501 * 108.69801 * 359.76446 * 21 19 18 23 23 H 1.09001 * 109.47057 * 54.84000 * 1 2 3 24 24 H 1.08999 * 109.46784 * 294.83905 * 1 2 3 25 25 H 1.08994 * 109.47023 * 174.83560 * 1 2 3 26 26 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47248 * 90.00098 * 13 12 2 28 28 H 1.09008 * 109.46740 * 210.00147 * 13 12 2 29 29 H 1.08995 * 109.47148 * 329.99869 * 13 12 2 30 30 H 1.08005 * 126.58924 * 359.94155 * 18 17 14 31 31 H 1.08995 * 109.46632 * 90.00321 * 20 19 18 32 32 H 1.09007 * 109.46639 * 210.00171 * 20 19 18 33 33 H 1.08994 * 109.47045 * 330.00026 * 20 19 18 34 34 H 1.08000 * 125.64851 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1352 -1.7855 -1.2293 6 6 2.3605 0.0122 -2.3580 7 7 2.7065 -0.6129 -3.4621 8 14 2.3137 1.8792 -2.3173 9 1 3.5988 2.3950 -1.7809 10 1 2.1071 2.3993 -3.6928 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2861 15 8 3.7119 -0.8791 2.9813 16 8 3.5795 1.1829 1.5747 17 6 1.8961 0.8533 3.4711 18 6 1.4714 0.2865 4.6164 19 7 0.6597 1.1999 5.2331 20 6 -0.0334 1.0234 6.5117 21 6 0.6162 2.2938 4.4423 22 7 1.3618 2.0810 3.3926 23 1 -0.3633 0.5918 -0.8402 24 1 -0.3633 0.4317 0.9326 25 1 -0.3633 -1.0234 -0.0925 26 1 2.9377 -0.1045 -4.2552 27 1 2.4157 -2.7378 0.9714 28 1 1.6239 -2.2854 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 1.7224 -0.6996 4.9784 31 1 0.6076 1.3683 7.3230 32 1 -0.9570 1.6023 6.5072 33 1 -0.2665 -0.0315 6.6560 34 1 0.0596 3.1965 4.6467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095011.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -30.816935 kcal Electronic energy + Delta-G solvation = -19906.616128 eV Core-core repulsion = 16774.188029 eV Total energy + Delta-G solvation = -3132.428099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.15096 -38.28720 -37.95298 -36.83626 -35.10328 -34.49263 -31.64732 -30.94755 -28.02519 -27.35348 -26.93125 -23.48394 -22.39393 -22.26289 -19.79070 -19.24217 -18.93089 -18.13754 -17.11764 -16.81830 -16.70668 -16.24837 -15.45037 -15.15802 -15.05113 -14.72452 -14.50608 -14.35698 -13.91728 -13.47776 -13.44871 -13.41831 -13.14329 -13.02296 -12.93141 -12.62049 -12.55276 -12.39466 -11.99468 -11.76975 -11.23180 -11.16040 -10.83769 -10.71758 -10.06881 -9.66070 -8.32156 -6.33947 -0.51654 0.59984 1.30197 1.39963 1.47369 1.61511 1.77556 2.29523 2.34513 2.89585 3.08385 3.22868 3.83746 3.91521 3.97887 4.08089 4.25651 4.44862 4.49346 4.73474 4.73561 4.83113 4.85224 4.97596 5.00158 5.14559 5.20216 5.35391 5.53324 5.58831 5.97231 6.09324 6.33860 6.71725 6.76490 7.31606 8.83465 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.006826 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.468835 B = 4101.014270 C = 4332.896961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.236 3.764 3 H 0.041 0.959 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.906 3.094 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.242 1.242 12 N -0.984 5.984 13 C 0.099 3.901 14 S 2.714 3.286 15 O -0.981 6.981 16 O -1.000 7.000 17 C -0.586 4.586 18 C 0.080 3.920 19 N -0.450 5.450 20 C 0.058 3.942 21 C 0.191 3.809 22 N -0.474 5.474 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.268 0.732 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.223 0.777 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 2.308 23.478 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.132 3.868 3 H 0.059 0.941 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.731 3.269 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.165 1.165 12 N -0.823 5.823 13 C -0.046 4.046 14 S 2.807 3.193 15 O -0.971 6.971 16 O -0.990 6.990 17 C -0.799 4.799 18 C -0.064 4.064 19 N -0.129 5.129 20 C -0.082 4.082 21 C -0.096 4.096 22 N -0.192 5.192 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.239 0.761 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.765 2.926 22.807 24.981 hybrid contribution -0.230 0.427 0.237 0.540 sum -9.995 3.352 23.044 25.341 Atomic orbital electron populations 1.22056 0.95619 1.01926 0.99989 1.18956 0.93143 0.92215 0.82514 0.94097 1.21422 1.43041 0.95067 0.95817 0.92504 1.25601 0.94211 1.01922 0.95257 1.69980 1.47468 1.37421 1.02480 0.86357 0.80271 0.82419 0.77863 1.20841 1.19809 1.16518 1.57402 1.70513 1.20880 1.33536 1.21449 1.01835 0.79718 1.01595 1.00923 0.73641 0.72316 0.72467 1.93490 1.68717 1.59352 1.75494 1.93478 1.75158 1.57532 1.72834 1.32997 1.26337 1.03942 1.16608 1.23109 0.93347 0.97642 0.92304 1.46088 1.34527 1.12569 1.19747 1.22649 0.98691 1.06659 0.80169 1.26133 1.01345 0.94489 0.87633 1.70244 1.10881 1.14043 1.23993 0.93237 0.93200 0.91654 0.92275 0.94043 0.89183 0.89905 0.76091 0.88404 0.86432 0.87318 0.72999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 9.04 71.98 0.65 -4.92 16 2 C 0.24 11.58 2.28 44.25 0.10 11.68 16 3 H 0.04 2.20 4.06 -2.39 -0.01 2.19 16 4 C -0.51 -29.58 8.82 25.60 0.23 -29.36 16 5 H 0.06 3.48 7.67 -2.91 -0.02 3.46 16 6 C 0.03 1.79 5.47 84.65 0.46 2.26 16 7 N -0.93 -58.93 13.96 21.44 0.30 -58.63 16 8 Si 0.91 47.63 26.99 68.60 1.85 49.48 16 9 H -0.28 -15.64 7.11 99.48 0.71 -14.93 16 10 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.24 -11.81 6.82 99.48 0.68 -11.13 16 12 N -0.98 -41.86 3.06 -520.44 -1.59 -43.45 16 13 C 0.10 3.37 9.39 127.77 1.20 4.57 16 14 S 2.71 115.15 5.80 -56.49 -0.33 114.82 16 15 O -0.98 -40.62 16.91 -128.00 -2.16 -42.78 16 16 O -1.00 -52.62 16.58 -128.00 -2.12 -54.74 16 17 C -0.59 -19.72 7.13 83.52 0.60 -19.13 16 18 C 0.08 1.82 11.31 83.09 0.94 2.75 16 19 N -0.45 -7.28 3.15 -552.53 -1.74 -9.02 16 20 C 0.06 0.20 11.18 127.77 1.43 1.63 16 21 C 0.19 4.03 12.56 180.26 2.26 6.29 16 22 N -0.47 -16.17 11.25 -197.77 -2.23 -18.40 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 2.45 6.88 -2.39 -0.02 2.44 16 26 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 2.29 7.79 -2.38 -0.02 2.27 16 29 H 0.08 2.59 6.53 -2.39 -0.02 2.58 16 30 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 33 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.25 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -87.29 302.15 0.92 -86.37 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.08 Total: 0.58 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 7.87 Total: -24.21 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -5.26 Total: -129.51 kcal Atomic # 8 Polarization: -93.24 SS G_CDS: -4.29 Total: -97.53 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.85 Total: 49.48 kcal Atomic # 16 Polarization: 115.15 SS G_CDS: -0.33 Total: 114.82 kcal Total: -87.29 0.92 -86.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095011.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.552 kcal (2) G-P(sol) polarization free energy of solvation -87.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds