Wall clock time and date at job start Mon Mar 30 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47419 * 2 1 4 4 C 1.36937 * 119.99854 * 293.76167 * 3 2 1 5 5 H 1.08002 * 120.00074 * 149.38694 * 4 3 2 6 6 C 1.38813 * 120.00243 * 329.38671 * 4 3 2 7 7 N 1.31622 * 119.99862 * 337.58762 * 6 4 3 8 8 Si 1.86800 * 120.00282 * 157.58865 * 6 4 3 9 9 H 1.48491 * 109.47099 * 59.99972 * 8 6 4 10 10 H 1.48498 * 109.47046 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46911 * 300.00141 * 8 6 4 12 12 S 1.65594 * 119.99981 * 113.75921 * 3 2 1 13 13 O 1.42104 * 106.40141 * 336.45876 * 12 3 2 14 14 O 1.42103 * 106.40190 * 203.54312 * 12 3 2 15 15 C 1.76199 * 107.22059 * 90.00089 * 12 3 2 16 16 C 1.39867 * 126.03673 * 90.02210 * 15 12 3 17 17 N 1.30843 * 108.20120 * 179.97438 * 16 15 12 18 18 N 1.40082 * 108.20269 * 0.02562 * 17 16 15 19 19 C 1.46505 * 126.03406 * 179.97438 * 18 17 16 20 20 C 1.52993 * 109.47034 * 304.97090 * 19 18 17 21 21 C 1.34942 * 107.92804 * 359.97438 * 18 17 16 22 22 H 1.08998 * 109.47315 * 300.00171 * 1 2 3 23 23 H 1.08999 * 109.47160 * 60.00100 * 1 2 3 24 24 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47133 * 240.00197 * 2 1 3 26 26 H 1.08996 * 109.47142 * 120.00438 * 2 1 3 27 27 H 0.97003 * 120.00116 * 179.97438 * 7 6 4 28 28 H 1.08002 * 125.90266 * 0.22092 * 16 15 12 29 29 H 1.08998 * 109.46990 * 64.97321 * 19 18 17 30 30 H 1.08998 * 109.47000 * 184.97119 * 19 18 17 31 31 H 1.08998 * 109.47204 * 60.00154 * 20 19 18 32 32 H 1.09004 * 109.47250 * 180.02562 * 20 19 18 33 33 H 1.08998 * 109.47420 * 299.99967 * 20 19 18 34 34 H 1.08005 * 126.12764 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7961 2.1860 -1.0854 5 1 1.6828 3.2519 -0.9532 6 6 1.7165 1.6319 -2.3556 7 7 2.2700 0.4629 -2.5996 8 14 0.8238 2.5453 -3.7188 9 1 1.4747 3.8612 -3.9417 10 1 0.8803 1.7464 -4.9694 11 1 -0.5938 2.7540 -3.3289 12 16 2.8392 1.9692 1.3125 13 8 2.4447 1.1735 2.4219 14 8 2.6916 3.3821 1.2781 15 6 4.5499 1.6409 1.0479 16 6 5.4607 2.4872 0.4072 17 7 6.6306 1.9012 0.4038 18 7 6.5007 0.6614 1.0429 19 6 7.5719 -0.3154 1.2547 20 6 8.2217 -0.6586 -0.0872 21 6 5.2148 0.5257 1.4289 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.2141 0.0755 -3.4871 28 1 5.2379 3.4585 -0.0091 29 1 8.3215 0.1068 1.9240 30 1 7.1563 -1.2198 1.6990 31 1 8.6374 0.2458 -0.5315 32 1 9.0184 -1.3857 0.0703 33 1 7.4722 -1.0808 -0.7565 34 1 4.7921 -0.3213 1.9489 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066913141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:10 Heat of formation + Delta-G solvation = -15.949341 kcal Electronic energy + Delta-G solvation = -19880.242621 eV Core-core repulsion = 16748.459229 eV Total energy + Delta-G solvation = -3131.783392 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10653 -37.78605 -37.65083 -36.30249 -35.41245 -33.50220 -31.51036 -30.87243 -30.37132 -26.61718 -24.90203 -23.21267 -22.73155 -21.68693 -20.12395 -19.04135 -18.41887 -18.07497 -16.82019 -16.46645 -16.40458 -16.08209 -15.40595 -15.20676 -14.82141 -14.52282 -13.99140 -13.87835 -13.67589 -13.52598 -13.03352 -12.99654 -12.78429 -12.64346 -12.58730 -12.54843 -12.52301 -12.14170 -12.07629 -11.86052 -11.49240 -11.38043 -11.03590 -10.48942 -10.01110 -9.58634 -8.19673 -5.88540 0.10292 0.72902 1.42124 1.53298 1.55553 1.56723 1.64431 2.38804 2.84939 3.03631 3.34676 3.52917 3.75470 3.97317 4.03114 4.13441 4.31538 4.47385 4.53880 4.72762 4.74750 4.81432 4.87129 4.88872 5.08634 5.18110 5.36754 5.47596 5.50588 5.71952 5.92841 6.00755 6.49482 6.56974 7.00300 7.45293 8.71647 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.007575 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.096414 B = 3695.477815 C = 4199.371687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.107 3.893 3 N -0.820 5.820 4 C -0.283 4.283 5 H 0.094 0.906 6 C 0.014 3.986 7 N -0.855 5.855 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.266 1.266 12 S 2.610 3.390 13 O -1.020 7.020 14 O -1.017 7.017 15 C -0.815 4.815 16 C 0.114 3.886 17 N -0.320 5.320 18 N -0.364 5.364 19 C 0.111 3.889 20 C -0.159 4.159 21 C 0.158 3.842 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.274 0.726 28 H 0.189 0.811 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 -6.490 2.645 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 N -0.646 5.646 4 C -0.427 4.427 5 H 0.112 0.888 6 C -0.196 4.196 7 N -0.494 5.494 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.191 1.191 12 S 2.710 3.290 13 O -1.010 7.010 14 O -1.007 7.007 15 C -0.910 4.910 16 C -0.074 4.074 17 N -0.141 5.141 18 N -0.143 5.143 19 C -0.007 4.007 20 C -0.217 4.217 21 C 0.006 3.994 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.206 0.794 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.563 -6.266 3.128 10.308 hybrid contribution -0.492 0.322 -0.833 1.019 sum 7.072 -5.944 2.296 9.519 Atomic orbital electron populations 1.21858 0.95906 1.01373 1.00973 1.21487 0.94968 0.82676 1.02772 1.53493 1.56914 1.20658 1.33564 1.19586 1.44750 0.92805 0.85566 0.88830 1.26155 0.96738 0.97202 0.99524 1.69968 1.38308 1.18281 1.22840 0.85338 0.79491 0.78579 0.77240 1.19509 1.20209 1.19080 1.07169 0.73002 0.73200 0.75616 1.93308 1.82888 1.70801 1.54023 1.93304 1.86727 1.32703 1.87986 1.32481 1.29116 1.05547 1.23839 1.23515 0.89231 0.99415 0.95246 1.77132 1.22774 0.94731 1.19470 1.49560 1.08382 1.14439 1.41964 1.22284 0.88210 0.90219 1.00028 1.22015 1.01509 1.02576 0.95583 1.22756 0.84393 0.98113 0.94180 0.94023 0.93425 0.90709 0.88913 0.91628 0.91613 0.79434 0.87970 0.85113 0.93160 0.87228 0.93502 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 9.96 71.98 0.72 -4.78 16 2 C 0.11 4.62 5.84 86.38 0.50 5.13 16 3 N -0.82 -39.35 2.98 -343.44 -1.02 -40.37 16 4 C -0.28 -14.30 8.67 84.03 0.73 -13.57 16 5 H 0.09 4.87 7.34 -2.91 -0.02 4.85 16 6 C 0.01 0.66 4.63 84.86 0.39 1.05 16 7 N -0.86 -41.59 11.06 21.65 0.24 -41.35 16 8 Si 0.97 38.61 29.61 68.60 2.03 40.64 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 12 S 2.61 123.46 5.77 -56.49 -0.33 123.14 16 13 O -1.02 -48.89 16.48 -128.00 -2.11 -51.00 16 14 O -1.02 -53.78 16.73 -128.00 -2.14 -55.92 16 15 C -0.81 -34.71 6.17 21.99 0.14 -34.57 16 16 C 0.11 4.82 11.81 85.23 1.01 5.82 16 17 N -0.32 -12.49 12.42 -57.02 -0.71 -13.19 16 18 N -0.36 -11.80 3.68 -348.07 -1.28 -13.08 16 19 C 0.11 2.25 7.23 86.38 0.62 2.88 16 20 C -0.16 -3.14 10.10 71.98 0.73 -2.42 16 21 C 0.16 5.57 11.19 83.54 0.93 6.50 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.94 7.41 -2.39 -0.02 1.93 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.09 4.25 5.52 -2.38 -0.01 4.23 16 26 H 0.07 2.61 7.03 -2.39 -0.02 2.59 16 27 H 0.27 12.55 8.31 -92.71 -0.77 11.78 16 28 H 0.19 7.60 8.06 -2.91 -0.02 7.58 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.13 1.74 8.07 -2.39 -0.02 1.72 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -66.62 304.32 1.55 -65.07 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.10 Total: 20.04 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 5.77 Total: -33.97 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -2.77 Total: -108.00 kcal Atomic # 8 Polarization: -102.67 SS G_CDS: -4.25 Total: -106.92 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 123.46 SS G_CDS: -0.33 Total: 123.14 kcal Total: -66.62 1.55 -65.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066913141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.119 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds