Wall clock time and date at job start Mon Mar 30 2020 01:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46875 * 2 1 4 4 C 1.34949 * 126.03177 * 124.99565 * 3 2 1 5 5 C 1.35323 * 107.73974 * 180.02562 * 4 3 2 6 6 S 1.76202 * 126.03552 * 180.02562 * 5 4 3 7 7 O 1.42094 * 106.40418 * 336.45272 * 6 5 4 8 8 O 1.42108 * 106.40077 * 203.53582 * 6 5 4 9 9 N 1.65593 * 107.22075 * 89.99853 * 6 5 4 10 10 C 1.46500 * 120.00643 * 64.99449 * 9 6 5 11 11 H 1.09005 * 109.46643 * 25.00604 * 10 9 6 12 12 C 1.52999 * 109.47436 * 265.00682 * 10 9 6 13 13 C 1.50694 * 109.47517 * 145.00073 * 10 9 6 14 14 H 1.08002 * 120.00179 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.39868 * 107.92069 * 0.26150 * 5 4 3 22 22 N 1.30837 * 108.20262 * 359.55812 * 21 5 4 23 23 H 1.09001 * 109.47556 * 299.99875 * 1 2 3 24 24 H 1.08997 * 109.46683 * 60.00266 * 1 2 3 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47556 * 240.00125 * 2 1 3 27 27 H 1.09001 * 109.47331 * 119.99409 * 2 1 3 28 28 H 1.07997 * 126.13441 * 0.04192 * 4 3 2 29 29 H 0.97007 * 119.99893 * 244.99787 * 9 6 5 30 30 H 1.08993 * 109.47298 * 59.98918 * 12 10 9 31 31 H 1.09001 * 109.47411 * 179.97438 * 12 10 9 32 32 H 1.09002 * 109.46412 * 299.99681 * 12 10 9 33 33 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 34 34 H 1.08000 * 125.89636 * 179.73900 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8940 5 6 3.0711 3.2138 0.5464 6 16 4.1041 4.3669 1.3879 7 8 4.2256 3.8967 2.7233 8 8 3.6123 5.6594 1.0608 9 7 5.6127 4.2564 0.7141 10 6 5.8202 4.6398 -0.6845 11 1 5.0535 5.3549 -0.9828 12 6 5.7318 3.3971 -1.5727 13 6 7.1807 5.2699 -0.8361 14 1 7.8265 5.3739 0.0233 15 6 7.6013 5.7136 -2.0720 16 7 6.8151 5.5865 -3.1186 17 14 9.2874 6.4952 -2.2598 18 1 9.1802 7.9608 -2.0462 19 1 10.2162 5.9154 -1.2566 20 1 9.8063 6.2307 -3.6258 21 6 2.3068 3.4744 -0.5957 22 7 1.6800 2.3750 -0.9276 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.3191 1.4126 1.7358 29 1 6.3591 3.9376 1.2454 30 1 4.7478 2.9414 -1.4630 31 1 5.8858 3.6825 -2.6133 32 1 6.4986 2.6822 -1.2743 33 1 7.1108 5.8990 -3.9880 34 1 2.2470 4.4191 -1.1156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066915369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:23 Heat of formation + Delta-G solvation = -3.973655 kcal Electronic energy + Delta-G solvation = -19459.458250 eV Core-core repulsion = 16328.194162 eV Total energy + Delta-G solvation = -3131.264087 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14249 -36.53293 -35.36890 -35.14032 -34.61893 -32.12424 -30.53237 -29.55138 -28.22076 -25.20642 -24.11727 -21.77854 -20.94261 -20.70778 -18.71228 -17.74819 -17.20515 -16.09024 -15.61145 -15.52256 -15.12623 -14.61920 -14.35842 -14.01315 -13.52886 -12.89919 -12.82906 -12.59774 -12.37631 -12.13372 -11.87522 -11.65344 -11.49536 -11.35260 -11.16839 -11.11637 -10.94850 -10.62500 -10.33471 -10.28087 -10.04836 -9.46760 -9.19286 -8.98727 -8.57350 -8.21744 -6.08768 -4.15512 1.19688 1.71831 2.42421 2.56790 3.29449 3.35918 3.38444 3.95645 4.26906 4.39679 4.49795 4.60599 4.68076 4.89017 4.92165 5.19311 5.24188 5.31756 5.44971 5.64824 5.82282 5.85520 6.43491 6.58409 6.81506 6.86263 6.90342 7.06871 7.58006 7.62162 7.71183 7.93360 8.06217 8.32419 8.87350 9.50159 10.97377 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.005570 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.553939 B = 5025.607403 C = 5621.197650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 N -0.366 5.366 4 C 0.170 3.830 5 C -0.802 4.802 6 S 2.720 3.280 7 O -0.991 6.991 8 O -0.964 6.964 9 N -1.101 6.101 10 C 0.270 3.730 11 H 0.052 0.948 12 C -0.156 4.156 13 C -0.520 4.520 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.142 3.858 22 N -0.296 5.296 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.187 0.813 29 H 0.407 0.593 30 H 0.013 0.987 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -11.384 5.637 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 N -0.144 5.144 4 C 0.017 3.983 5 C -0.899 4.899 6 S 2.807 3.193 7 O -0.981 6.981 8 O -0.954 6.954 9 N -0.862 5.862 10 C 0.166 3.834 11 H 0.070 0.930 12 C -0.216 4.216 13 C -0.560 4.560 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.212 1.212 21 C -0.047 4.047 22 N -0.115 5.115 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.204 0.796 29 H 0.241 0.759 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.211 -11.490 5.117 16.201 hybrid contribution 1.677 -0.025 -0.002 1.677 sum -8.534 -11.515 5.115 15.218 Atomic orbital electron populations 1.22053 0.93558 1.02886 1.03802 1.21809 0.96345 0.77465 1.04176 1.49236 1.34351 1.10438 1.20418 1.22385 0.90074 0.92405 0.93396 1.31874 1.27892 1.12744 1.17373 1.00858 0.72866 0.73522 0.72095 1.93489 1.86893 1.82854 1.34906 1.93552 1.80612 1.36506 1.84732 1.55533 1.23762 1.82329 1.24571 1.18566 0.98507 0.92497 0.73840 0.93036 1.22267 0.96738 0.98003 1.04566 1.21241 1.00576 1.39533 0.94638 0.91773 1.24910 0.97673 0.95655 0.95675 1.69869 1.36417 1.46518 0.99883 0.86459 0.83694 0.79718 0.77288 1.20502 1.19881 1.21237 1.23558 0.91225 0.97478 0.92467 1.77354 1.24466 0.96756 1.12950 0.91995 0.90898 0.90631 0.89302 0.88381 0.79574 0.75935 0.96785 0.88995 0.95056 0.92653 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.10 37.16 0.38 -0.91 16 2 C 0.12 1.05 7.23 -4.04 -0.03 1.03 16 3 N -0.37 -4.88 3.68 -61.36 -0.23 -5.10 16 4 C 0.17 2.34 11.19 -17.22 -0.19 2.15 16 5 C -0.80 -13.33 5.22 -40.01 -0.21 -13.54 16 6 S 2.72 51.01 5.86 -107.50 -0.63 50.38 16 7 O -0.99 -19.05 17.84 -57.17 -1.02 -20.07 16 8 O -0.96 -21.26 17.21 -57.17 -0.98 -22.25 16 9 N -1.10 -21.97 5.46 -5.88 -0.03 -22.00 16 10 C 0.27 6.44 2.89 -69.09 -0.20 6.24 16 11 H 0.05 1.34 7.50 -51.93 -0.39 0.95 16 12 C -0.16 -3.55 9.29 37.16 0.35 -3.20 16 13 C -0.52 -13.67 8.76 -34.44 -0.30 -13.97 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.39 11.32 55.43 0.63 -23.76 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.14 2.41 10.96 -17.37 -0.19 2.22 16 22 N -0.30 -4.79 12.42 30.62 0.38 -4.41 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 28 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.41 7.34 8.83 -34.47 -0.30 7.04 16 30 H 0.01 0.28 6.23 -51.93 -0.32 -0.05 16 31 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.20 3.16 8.06 -52.49 -0.42 2.73 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -33.27 305.26 -7.06 -40.33 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.26 Total: 5.00 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.50 Total: -18.39 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.75 Total: -55.27 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.00 Total: -42.32 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.63 Total: 50.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.27 -7.06 -40.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066915369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.353 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds