Wall clock time and date at job start Mon Mar 30 2020 01:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46875 * 2 1 4 4 C 1.34949 * 126.03177 * 124.99565 * 3 2 1 5 5 C 1.35323 * 107.73974 * 180.02562 * 4 3 2 6 6 S 1.76202 * 126.03552 * 180.02562 * 5 4 3 7 7 O 1.42094 * 106.40418 * 336.45272 * 6 5 4 8 8 O 1.42108 * 106.40077 * 203.53582 * 6 5 4 9 9 N 1.65593 * 107.22075 * 89.99853 * 6 5 4 10 10 C 1.46500 * 120.00643 * 64.99449 * 9 6 5 11 11 H 1.09005 * 109.46643 * 25.00604 * 10 9 6 12 12 C 1.52999 * 109.47436 * 265.00682 * 10 9 6 13 13 C 1.50694 * 109.47517 * 145.00073 * 10 9 6 14 14 H 1.08002 * 120.00179 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 C 1.39868 * 107.92069 * 0.26150 * 5 4 3 22 22 N 1.30837 * 108.20262 * 359.55812 * 21 5 4 23 23 H 1.09001 * 109.47556 * 299.99875 * 1 2 3 24 24 H 1.08997 * 109.46683 * 60.00266 * 1 2 3 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47556 * 240.00125 * 2 1 3 27 27 H 1.09001 * 109.47331 * 119.99409 * 2 1 3 28 28 H 1.07997 * 126.13441 * 0.04192 * 4 3 2 29 29 H 0.97007 * 119.99893 * 244.99787 * 9 6 5 30 30 H 1.08993 * 109.47298 * 59.98918 * 12 10 9 31 31 H 1.09001 * 109.47411 * 179.97438 * 12 10 9 32 32 H 1.09002 * 109.46412 * 299.99681 * 12 10 9 33 33 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 34 34 H 1.08000 * 125.89636 * 179.73900 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8940 5 6 3.0711 3.2138 0.5464 6 16 4.1041 4.3669 1.3879 7 8 4.2256 3.8967 2.7233 8 8 3.6123 5.6594 1.0608 9 7 5.6127 4.2564 0.7141 10 6 5.8202 4.6398 -0.6845 11 1 5.0535 5.3549 -0.9828 12 6 5.7318 3.3971 -1.5727 13 6 7.1807 5.2699 -0.8361 14 1 7.8265 5.3739 0.0233 15 6 7.6013 5.7136 -2.0720 16 7 6.8151 5.5865 -3.1186 17 14 9.2874 6.4952 -2.2598 18 1 9.1802 7.9608 -2.0462 19 1 10.2162 5.9154 -1.2566 20 1 9.8063 6.2307 -3.6258 21 6 2.3068 3.4744 -0.5957 22 7 1.6800 2.3750 -0.9276 23 1 -0.3634 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.3191 1.4126 1.7358 29 1 6.3591 3.9376 1.2454 30 1 4.7478 2.9414 -1.4630 31 1 5.8858 3.6825 -2.6133 32 1 6.4986 2.6822 -1.2743 33 1 7.1108 5.8990 -3.9880 34 1 2.2470 4.4191 -1.1156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066915369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:23 Heat of formation + Delta-G solvation = -29.576109 kcal Electronic energy + Delta-G solvation = -19460.568455 eV Core-core repulsion = 16328.194162 eV Total energy + Delta-G solvation = -3132.374293 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28738 -38.12425 -37.17408 -36.74339 -35.47989 -34.05614 -31.65712 -30.58175 -30.01417 -27.19715 -24.96870 -23.01834 -22.74417 -21.80515 -20.20386 -19.12816 -18.77890 -17.73095 -17.10181 -16.70855 -16.50443 -16.26265 -15.51955 -15.28189 -14.85919 -14.46489 -14.07839 -13.93581 -13.61594 -13.45520 -13.15283 -13.05693 -12.97515 -12.94708 -12.81719 -12.75502 -12.38281 -12.19520 -12.13820 -11.93758 -11.62063 -11.07879 -10.61195 -10.54494 -10.24062 -9.95340 -8.10088 -6.23653 -0.29051 0.60442 1.25435 1.47238 1.47634 1.49412 1.58442 2.40322 2.53145 2.98624 3.19830 3.32273 3.66929 3.82987 4.02685 4.07164 4.33720 4.43208 4.52534 4.64547 4.77282 4.87165 4.96363 5.09043 5.18875 5.20745 5.34712 5.63642 5.81173 5.89420 6.09385 6.19812 6.39182 6.50842 6.88116 7.45612 8.95128 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.005570 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.553939 B = 5025.607403 C = 5621.197650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -0.357 5.357 4 C 0.184 3.816 5 C -0.822 4.822 6 S 2.740 3.260 7 O -0.993 6.993 8 O -1.004 7.004 9 N -1.101 6.101 10 C 0.276 3.724 11 H 0.022 0.978 12 C -0.141 4.141 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.961 3.039 18 H -0.280 1.280 19 H -0.265 1.265 20 H -0.283 1.283 21 C 0.123 3.877 22 N -0.314 5.314 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.229 0.771 29 H 0.416 0.584 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 -13.539 6.683 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.010 4.010 3 N -0.135 5.135 4 C 0.030 3.970 5 C -0.923 4.923 6 S 2.830 3.170 7 O -0.983 6.983 8 O -0.994 6.994 9 N -0.861 5.861 10 C 0.170 3.830 11 H 0.040 0.960 12 C -0.201 4.201 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.786 3.214 18 H -0.206 1.206 19 H -0.189 1.189 20 H -0.209 1.209 21 C -0.066 4.066 22 N -0.133 5.133 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.157 0.843 28 H 0.245 0.755 29 H 0.251 0.749 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.908 -13.645 6.185 17.961 hybrid contribution 1.471 0.521 -0.295 1.588 sum -8.437 -13.123 5.890 16.676 Atomic orbital electron populations 1.22033 0.93067 1.04434 1.02340 1.22373 0.96843 0.75065 1.06691 1.49635 1.33338 1.11412 1.19100 1.22980 0.88937 0.91379 0.93742 1.31419 1.28871 1.13845 1.18136 0.99932 0.72267 0.72969 0.71786 1.93476 1.86960 1.82828 1.35075 1.93499 1.81072 1.39553 1.85307 1.55323 1.25062 1.82593 1.23145 1.18241 0.96593 0.92310 0.75832 0.96034 1.22050 0.97949 0.97579 1.02527 1.21637 1.01676 1.39822 0.94873 0.91555 1.25676 1.01009 0.96172 0.95500 1.69996 1.37931 1.47219 1.00208 0.85513 0.79836 0.78586 0.77415 1.20591 1.18913 1.20890 1.23585 0.92060 0.97869 0.93064 1.77294 1.24691 0.97153 1.14179 0.92589 0.93193 0.87576 0.88339 0.84335 0.75492 0.74903 0.95001 0.91673 0.94368 0.92662 0.79350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.10 71.98 0.73 -1.34 16 2 C 0.11 1.47 7.23 86.38 0.62 2.09 16 3 N -0.36 -8.58 3.68 -348.04 -1.28 -9.86 16 4 C 0.18 4.53 11.19 83.54 0.93 5.47 16 5 C -0.82 -26.54 5.22 21.99 0.11 -26.42 16 6 S 2.74 102.01 5.86 -56.49 -0.33 101.68 16 7 O -0.99 -36.69 17.84 -128.00 -2.28 -38.98 16 8 O -1.00 -45.46 17.21 -128.00 -2.20 -47.66 16 9 N -1.10 -43.63 5.46 -172.53 -0.94 -44.57 16 10 C 0.28 13.32 2.89 44.24 0.13 13.45 16 11 H 0.02 1.18 7.50 -2.38 -0.02 1.16 16 12 C -0.14 -6.43 9.29 71.98 0.67 -5.76 16 13 C -0.54 -28.54 8.76 25.60 0.22 -28.31 16 14 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 15 C 0.02 0.88 5.30 84.66 0.45 1.33 16 16 N -0.91 -50.97 11.32 21.45 0.24 -50.73 16 17 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.12 4.22 10.96 85.24 0.93 5.16 16 22 N -0.31 -9.91 12.42 -57.02 -0.71 -10.62 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.14 0.80 8.07 -2.39 -0.02 0.78 16 28 H 0.23 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.42 14.66 8.83 -96.74 -0.85 13.80 16 30 H 0.03 1.29 6.23 -2.39 -0.01 1.27 16 31 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 34 H 0.19 6.46 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -71.89 305.26 -0.41 -72.30 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.26 Total: 18.40 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 4.81 Total: -34.34 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -2.69 Total: -115.78 kcal Atomic # 8 Polarization: -82.16 SS G_CDS: -4.49 Total: -86.64 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 102.01 SS G_CDS: -0.33 Total: 101.68 kcal Total: -71.89 -0.41 -72.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066915369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.727 kcal (2) G-P(sol) polarization free energy of solvation -71.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds