Wall clock time and date at job start Mon Mar 30 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35034 * 126.39785 * 2 1 4 4 N 1.30503 * 108.70195 * 179.82987 * 3 2 1 5 5 C 1.34128 * 109.25241 * 0.44041 * 4 3 2 6 6 S 1.76199 * 125.99047 * 179.72690 * 5 4 3 7 7 O 1.42098 * 106.40162 * 23.54325 * 6 5 4 8 8 O 1.42102 * 106.40064 * 156.45983 * 6 5 4 9 9 N 1.65596 * 107.21928 * 270.00101 * 6 5 4 10 10 C 1.46497 * 120.00063 * 64.99967 * 9 6 5 11 11 C 1.53002 * 109.47357 * 164.99973 * 10 9 6 12 12 C 1.53003 * 109.47164 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46993 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99975 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99860 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00097 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47233 * 89.99112 * 17 15 13 19 19 H 1.48494 * 109.46965 * 209.99544 * 17 15 13 20 20 H 1.48507 * 109.46874 * 329.99476 * 17 15 13 21 21 C 1.34675 * 108.02157 * 359.72797 * 5 4 3 22 22 H 1.09001 * 109.47060 * 269.69268 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.68757 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.68840 * 1 2 3 25 25 H 1.08005 * 125.65147 * 359.97438 * 3 2 1 26 26 H 0.97003 * 120.00226 * 244.99815 * 9 6 5 27 27 H 1.09002 * 109.47195 * 285.00546 * 10 9 6 28 28 H 1.09007 * 109.47065 * 44.99783 * 10 9 6 29 29 H 1.08999 * 109.46827 * 299.99997 * 11 10 9 30 30 H 1.08996 * 109.46733 * 60.00031 * 11 10 9 31 31 H 1.08996 * 109.46914 * 300.00156 * 12 11 10 32 32 H 1.09001 * 109.46903 * 60.00141 * 12 11 10 33 33 H 0.97006 * 120.00187 * 180.02562 * 16 15 13 34 34 H 1.07999 * 126.59305 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0037 5 6 3.5461 -0.6505 -0.0036 6 16 4.9993 -1.6468 -0.0091 7 8 6.0369 -0.8459 0.5397 8 8 4.6236 -2.9074 0.5285 9 7 5.4036 -1.9154 -1.5923 10 6 5.8102 -0.7954 -2.4446 11 6 6.4771 -1.3345 -3.7117 12 6 6.9022 -0.1648 -4.6016 13 6 7.5585 -0.6959 -5.8499 14 1 7.6624 -1.7612 -5.9939 15 6 8.0273 0.1783 -6.8075 16 7 7.9013 1.4754 -6.6319 17 14 8.8414 -0.4801 -8.3546 18 1 7.8126 -0.6889 -9.4049 19 1 9.8503 0.4969 -8.8370 20 1 9.5086 -1.7717 -8.0514 21 6 2.2772 -1.1018 -0.0060 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3633 0.8928 -0.5090 24 1 -0.3634 -0.8872 -0.5187 25 1 1.9335 2.1144 -0.0004 26 1 5.3713 -2.8143 -1.9554 27 1 4.9327 -0.2090 -2.7172 28 1 6.5151 -0.1642 -1.9034 29 1 7.3546 -1.9208 -3.4391 30 1 5.7721 -1.9657 -4.2528 31 1 6.0250 0.4219 -4.8741 32 1 7.6073 0.4660 -4.0601 33 1 8.2308 2.0905 -7.3058 34 1 1.9612 -2.1345 -0.0113 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:04 Heat of formation + Delta-G solvation = -54.539751 kcal Electronic energy + Delta-G solvation = -18566.577792 eV Core-core repulsion = 15433.120994 eV Total energy + Delta-G solvation = -3133.456798 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.17092 -38.30200 -37.37140 -36.93179 -35.16305 -35.11341 -32.62537 -30.96712 -28.20250 -28.05977 -24.77057 -23.50267 -22.45857 -22.16324 -20.29898 -19.05308 -18.55671 -18.32682 -17.08324 -16.87930 -16.71576 -16.45509 -16.01566 -15.73881 -15.14029 -15.07610 -14.29528 -14.04366 -13.97164 -13.73200 -13.50773 -13.25293 -13.18968 -13.09980 -12.77388 -12.64150 -12.51316 -12.27853 -11.69706 -11.39057 -11.20445 -11.13453 -10.86642 -10.52486 -10.46765 -10.05422 -8.16589 -6.27607 -0.57332 0.58895 1.42822 1.44559 1.55547 1.57506 1.75276 2.21201 2.44351 2.79079 3.16913 3.19824 3.83106 3.91415 3.96255 4.09940 4.21308 4.28412 4.42438 4.52786 4.69751 4.71649 4.99330 4.99948 5.19283 5.21788 5.24733 5.55904 5.76717 5.88416 6.03075 6.14643 6.27140 6.72975 6.89468 7.41487 8.95436 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.003920 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.474040 B = 7141.801536 C = 7757.619424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.451 5.451 3 C 0.187 3.813 4 N -0.470 5.470 5 C -0.593 4.593 6 S 2.747 3.253 7 O -0.992 6.992 8 O -0.975 6.975 9 N -1.103 6.103 10 C 0.131 3.869 11 C -0.103 4.103 12 C 0.021 3.979 13 C -0.542 4.542 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.079 3.921 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.250 0.750 26 H 0.428 0.572 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.071 0.929 31 H -0.002 1.002 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.920 -5.337 13.175 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.130 5.130 3 C -0.100 4.100 4 N -0.187 5.187 5 C -0.805 4.805 6 S 2.835 3.165 7 O -0.982 6.982 8 O -0.965 6.965 9 N -0.865 5.865 10 C 0.005 3.995 11 C -0.142 4.142 12 C -0.017 4.017 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.065 4.065 22 H 0.118 0.882 23 H 0.132 0.868 24 H 0.126 0.874 25 H 0.266 0.734 26 H 0.264 0.736 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.919 -4.759 13.929 23.970 hybrid contribution -0.640 -0.199 -1.238 1.407 sum -19.559 -4.957 12.691 23.837 Atomic orbital electron populations 1.22640 0.72341 1.07375 1.05900 1.46105 1.10201 1.05870 1.50824 1.26098 0.84752 0.95736 1.03371 1.70285 1.22277 1.08904 1.17274 1.33041 1.17021 1.03426 1.27018 1.00047 0.72666 0.71907 0.71850 1.93517 1.55764 1.71779 1.77147 1.93550 1.84821 1.40899 1.77235 1.55208 1.83625 1.17082 1.30627 1.21180 0.98926 0.87527 0.91847 1.21629 0.99914 0.98869 0.93760 1.18992 0.95044 0.93800 0.93859 1.21697 1.38334 0.93511 1.04430 0.91771 1.25995 0.96762 0.95058 1.02164 1.70107 1.48053 1.02908 1.36349 0.85432 0.78250 0.78308 0.78941 1.19653 1.21018 1.18716 1.23201 0.88725 0.95308 0.99280 0.88207 0.86763 0.87378 0.73439 0.73556 0.91965 0.92077 0.92004 0.91043 0.98402 0.98945 0.92824 0.75901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 11.18 127.77 1.43 1.59 16 2 N -0.45 -6.45 3.15 -552.51 -1.74 -8.20 16 3 C 0.19 3.61 12.56 180.26 2.26 5.88 16 4 N -0.47 -14.07 11.25 -197.77 -2.23 -16.29 16 5 C -0.59 -16.34 7.10 83.52 0.59 -15.74 16 6 S 2.75 83.90 5.89 -56.49 -0.33 83.57 16 7 O -0.99 -39.47 17.49 -128.00 -2.24 -41.71 16 8 O -0.98 -29.67 17.84 -128.00 -2.28 -31.95 16 9 N -1.10 -31.76 6.00 -187.48 -1.12 -32.88 16 10 C 0.13 4.69 6.22 86.38 0.54 5.23 16 11 C -0.10 -4.13 5.30 30.60 0.16 -3.97 16 12 C 0.02 1.11 4.97 29.85 0.15 1.26 16 13 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 17 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.08 1.49 11.31 83.09 0.94 2.43 16 22 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 24 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.25 2.53 8.06 -2.91 -0.02 2.50 16 26 H 0.43 9.94 8.65 -96.74 -0.84 9.10 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.40 7.75 -2.38 -0.02 2.38 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 34 H 0.22 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -84.56 312.69 -0.60 -85.15 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.27 Total: 6.56 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 6.77 Total: -33.53 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.81 Total: -114.42 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -4.52 Total: -73.66 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 83.90 SS G_CDS: -0.33 Total: 83.57 kcal Total: -84.56 -0.60 -85.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.615 kcal (2) G-P(sol) polarization free energy of solvation -84.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds