Wall clock time and date at job start Mon Mar 30 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46850 * 111.00182 * 2 1 4 4 C 1.53030 * 109.52681 * 185.84045 * 3 2 1 5 5 C 1.53119 * 109.27722 * 300.82129 * 4 3 2 6 6 C 1.47203 * 109.52457 * 297.68493 * 5 4 3 7 7 N 4.25299 * 119.61328 * 62.08376 * 2 1 3 8 8 N 1.46506 * 109.52423 * 177.55594 * 5 4 3 9 9 S 1.65597 * 120.00079 * 179.72180 * 8 5 4 10 10 O 1.42100 * 106.40448 * 178.54099 * 9 8 5 11 11 O 1.42103 * 106.40365 * 311.46606 * 9 8 5 12 12 C 1.76197 * 107.21750 * 65.00357 * 9 8 5 13 13 H 1.08002 * 120.00143 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00167 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00103 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99915 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47322 * 60.00199 * 16 14 12 18 18 H 1.48504 * 109.46802 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47305 * 300.00125 * 16 14 12 20 20 C 1.53124 * 109.16260 * 57.65260 * 5 4 3 21 21 C 1.46843 * 111.00126 * 124.20881 * 2 1 3 22 22 H 1.08997 * 109.47307 * 59.99712 * 1 2 3 23 23 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47096 * 300.00083 * 1 2 3 25 25 H 1.08999 * 109.45996 * 65.82394 * 3 2 1 26 26 H 1.08998 * 109.45198 * 305.85509 * 3 2 1 27 27 H 1.08994 * 109.51012 * 180.87977 * 4 3 2 28 28 H 1.09006 * 109.53631 * 60.77907 * 4 3 2 29 29 H 0.97005 * 119.99811 * 0.02562 * 8 5 4 30 30 H 0.96999 * 120.00208 * 180.02562 * 15 14 12 31 31 H 1.09004 * 109.50187 * 62.28370 * 20 5 4 32 32 H 1.08997 * 109.50001 * 182.40285 * 20 5 4 33 33 H 1.09001 * 109.46826 * 294.17761 * 21 2 1 34 34 H 1.09000 * 109.46533 * 54.14288 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.8093 1.2109 2.2859 7 7 3.5706 1.7311 3.2672 8 7 5.5717 0.4488 0.8478 9 16 6.4862 -0.3567 1.9690 10 8 7.8299 -0.2934 1.5112 11 8 6.0752 0.1232 3.2418 12 6 6.0174 -2.0539 1.9022 13 1 5.2556 -2.3769 1.2082 14 6 6.6232 -2.9698 2.7361 15 7 7.5505 -2.5765 3.5817 16 14 6.1256 -4.7689 2.6658 17 1 6.3816 -5.3004 1.3030 18 1 6.9190 -5.5409 3.6558 19 1 4.6805 -4.8957 2.9832 20 6 3.5181 -0.8715 1.0208 21 6 1.9952 -0.7707 1.1337 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7325 1.8608 0.9376 26 1 1.5634 1.9256 -0.8330 27 1 3.9099 2.3512 -0.1310 28 1 3.7819 0.8572 -1.0907 29 1 5.9984 0.8661 0.0832 30 1 7.9769 -3.2209 4.1681 31 1 3.7813 -1.3836 0.0953 32 1 3.9099 -1.4302 1.8707 33 1 1.7325 -0.2709 2.0660 34 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088473353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:36 Heat of formation + Delta-G solvation = -82.324161 kcal Electronic energy + Delta-G solvation = -20241.706815 eV Core-core repulsion = 17107.045195 eV Total energy + Delta-G solvation = -3134.661620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86162 -37.63868 -37.19070 -36.16258 -36.10089 -35.18201 -32.04688 -31.99494 -28.31001 -27.22517 -24.38371 -24.28681 -22.04747 -20.92717 -19.45078 -18.39250 -18.26923 -17.38759 -16.97056 -16.08457 -15.97948 -15.83748 -15.64307 -15.26488 -15.07728 -14.45896 -13.98238 -13.88474 -13.72618 -13.47353 -13.41146 -13.07576 -12.95114 -12.78215 -12.53315 -12.43473 -12.38096 -12.30616 -12.22742 -12.13207 -11.93509 -11.39797 -11.14573 -10.95269 -10.54321 -9.28412 -8.71687 -7.41748 0.24619 1.39578 1.42131 1.53921 1.68150 1.73625 2.24904 2.63000 2.77995 2.91779 3.06240 3.59738 3.65365 3.77528 4.08249 4.14598 4.34564 4.44631 4.53427 4.58665 4.67431 4.75953 4.90318 4.93241 4.99886 5.08669 5.13818 5.24352 5.28848 5.34346 5.96000 6.07736 6.15376 6.27781 6.54562 6.83213 8.24999 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.008054 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.839361 B = 3475.575189 C = 4200.471412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.052 3.948 4 C -0.105 4.105 5 C 0.284 3.716 6 C 0.207 3.793 7 N -0.457 5.457 8 N -1.104 6.104 9 S 2.700 3.300 10 O -1.042 7.042 11 O -1.039 7.039 12 C -1.028 5.028 13 H 0.147 0.853 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.986 3.014 17 H -0.243 1.243 18 H -0.275 1.275 19 H -0.245 1.245 20 C -0.152 4.152 21 C 0.058 3.942 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.429 0.571 30 H 0.296 0.704 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.014 0.986 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 1.517 -12.652 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.077 4.077 4 C -0.144 4.144 5 C 0.191 3.809 6 C -0.112 4.112 7 N -0.133 5.133 8 N -0.863 5.863 9 S 2.802 3.198 10 O -1.032 7.032 11 O -1.028 7.028 12 C -1.162 5.162 13 H 0.164 0.836 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.804 3.196 17 H -0.166 1.166 18 H -0.200 1.200 19 H -0.169 1.169 20 C -0.191 4.191 21 C -0.071 4.071 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.266 0.734 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.239 2.437 -10.748 17.225 hybrid contribution 0.200 -0.625 0.761 1.005 sum -13.039 1.811 -9.987 16.524 Atomic orbital electron populations 1.22449 0.85763 1.03086 1.01192 1.62059 1.08886 1.13239 1.42025 1.22221 0.94090 0.89785 1.01562 1.22017 0.95002 1.01023 0.96394 1.17826 0.80954 0.96024 0.86109 1.30135 0.92838 0.93151 0.95125 1.80974 1.09530 1.11419 1.11414 1.55598 1.14588 1.72517 1.43611 1.00521 0.71452 0.76446 0.71351 1.93324 1.38293 1.89516 1.82092 1.93369 1.83150 1.83370 1.42888 1.31064 1.35582 1.16839 1.32702 0.83561 1.26026 0.90747 1.07062 0.90361 1.70021 1.22975 1.40023 1.19999 0.85214 0.80065 0.74287 0.80043 1.16607 1.20015 1.16861 1.22724 0.95829 0.93734 1.06857 1.22093 0.93686 1.00009 0.91277 0.89237 0.90315 0.96464 0.96496 0.86352 0.88452 0.85218 0.73407 0.89417 0.85630 0.89780 0.96748 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.59 127.69 1.22 1.57 16 2 N -0.54 -10.56 4.91 -922.63 -4.53 -15.09 16 3 C 0.05 0.97 5.26 86.32 0.45 1.43 16 4 C -0.10 -2.10 4.97 30.64 0.15 -1.95 16 5 C 0.28 8.94 0.84 1.88 0.00 8.94 16 6 C 0.21 8.27 9.70 89.44 0.87 9.14 16 7 N -0.46 -20.70 18.53 20.01 0.37 -20.33 16 8 N -1.10 -39.61 5.53 -159.11 -0.88 -40.49 16 9 S 2.70 139.92 4.87 -56.49 -0.28 139.64 16 10 O -1.04 -60.92 18.02 -128.00 -2.31 -63.22 16 11 O -1.04 -61.92 15.83 -128.00 -2.03 -63.95 16 12 C -1.03 -51.92 7.62 67.73 0.52 -51.40 16 13 H 0.15 6.17 5.48 -2.91 -0.02 6.16 16 14 C 0.07 3.76 5.46 84.66 0.46 4.22 16 15 N -0.90 -52.90 13.19 21.45 0.28 -52.62 16 16 Si 0.99 39.03 29.54 68.60 2.03 41.06 16 17 H -0.24 -8.81 7.11 99.48 0.71 -8.10 16 18 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 19 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 20 C -0.15 -4.55 3.50 30.65 0.11 -4.44 16 21 C 0.06 1.45 5.25 86.33 0.45 1.90 16 22 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 24 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.02 0.39 7.32 -2.39 -0.02 0.37 16 26 H 0.12 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.43 12.06 8.61 -96.74 -0.83 11.23 16 30 H 0.30 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.13 3.15 7.80 -2.38 -0.02 3.13 16 32 H 0.08 3.12 5.34 -2.39 -0.01 3.11 16 33 H 0.01 0.42 7.32 -2.39 -0.02 0.40 16 34 H 0.10 2.20 8.09 -2.39 -0.02 2.18 16 Total: -1.00 -80.13 290.96 -2.80 -82.93 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.30 Total: 22.65 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.24 Total: -30.59 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -4.76 Total: -128.52 kcal Atomic # 8 Polarization: -122.84 SS G_CDS: -4.33 Total: -127.17 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 16 Polarization: 139.92 SS G_CDS: -0.28 Total: 139.64 kcal Total: -80.13 -2.80 -82.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088473353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.604 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds