Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00205 * 2 1 4 4 C 1.52991 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47351 * 65.13267 * 4 3 2 6 6 C 1.46904 * 111.00251 * 194.52730 * 5 4 3 7 7 C 1.50700 * 109.47325 * 75.84198 * 6 5 4 8 8 H 1.08001 * 119.99957 * 4.49108 * 7 6 5 9 9 C 1.37877 * 119.99771 * 184.48591 * 7 6 5 10 10 N 1.31517 * 119.99944 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00116 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.47056 * 90.00115 * 11 9 7 13 13 H 1.48499 * 109.47347 * 209.99612 * 11 9 7 14 14 H 1.48495 * 109.47347 * 330.00164 * 11 9 7 15 15 C 1.46900 * 110.99990 * 70.57021 * 5 4 3 16 16 C 1.50694 * 109.46893 * 190.00248 * 15 5 4 17 17 C 1.34495 * 125.78144 * 90.00392 * 16 15 5 18 18 C 1.41406 * 106.85363 * 179.97438 * 17 16 15 19 19 C 1.34652 * 106.82831 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 125.80020 * 180.02562 * 19 18 17 21 21 O 1.34301 * 108.39973 * 359.73437 * 19 18 17 22 22 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47257 * 300.00415 * 1 2 3 24 24 H 1.08998 * 109.47195 * 59.99932 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99614 * 3 2 1 26 26 H 1.08993 * 109.46749 * 300.00390 * 3 2 1 27 27 H 1.09012 * 109.47130 * 305.13631 * 4 3 2 28 28 H 1.09004 * 109.47527 * 185.13965 * 4 3 2 29 29 H 1.09000 * 109.47192 * 195.84727 * 6 5 4 30 30 H 1.09003 * 109.46458 * 315.84577 * 6 5 4 31 31 H 0.96995 * 120.00082 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46735 * 310.00009 * 15 5 4 33 33 H 1.08998 * 109.46882 * 69.99937 * 15 5 4 34 34 H 1.07994 * 126.57064 * 359.97438 * 17 16 15 35 35 H 1.07998 * 126.58811 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9771 0.5657 -1.2575 6 6 5.3734 0.1193 -1.1623 7 6 5.4419 -1.1459 -0.3464 8 1 4.5328 -1.6152 -0.0005 9 6 6.6651 -1.7042 -0.0416 10 7 6.7249 -2.8086 0.6701 11 14 8.2375 -0.8921 -0.6393 12 1 8.7083 0.0830 0.3771 13 1 9.2801 -1.9281 -0.8514 14 1 7.9743 -0.1854 -1.9185 15 6 3.7939 1.4839 -2.3894 16 6 4.0217 0.7412 -3.6806 17 6 3.0812 0.0952 -4.3927 18 6 3.7286 -0.4550 -5.5231 19 6 5.0275 -0.1113 -5.4341 20 17 6.2697 -0.5326 -6.5713 21 8 5.1976 0.6183 -4.3194 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8465 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8513 0.5662 0.8396 28 1 3.9785 2.1764 0.0914 29 1 5.7628 -0.0717 -2.1623 30 1 5.9706 0.8943 -0.6817 31 1 7.5854 -3.2012 0.8848 32 1 2.7794 1.8824 -2.3735 33 1 4.5077 2.3040 -2.3111 34 1 2.0326 0.0126 -4.1481 35 1 3.2694 -1.0381 -6.3076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -16.657922 kcal Electronic energy + Delta-G solvation = -19296.525267 eV Core-core repulsion = 16130.374691 eV Total energy + Delta-G solvation = -3166.150576 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.36451 -37.99739 -36.83106 -36.34652 -32.93342 -32.45963 -30.68245 -29.45035 -27.19083 -25.91814 -24.49541 -22.07902 -21.65677 -20.75419 -19.73737 -17.48577 -16.84696 -16.16785 -16.09050 -15.81913 -14.98470 -14.72693 -14.49618 -13.75918 -13.71898 -13.22719 -12.80989 -12.63183 -12.47227 -12.28460 -12.01554 -11.96350 -11.74515 -11.33166 -11.30367 -11.03657 -10.73205 -10.60379 -10.09103 -9.85794 -9.66051 -9.34600 -9.20330 -8.50660 -8.12301 -7.46734 -5.98128 -3.94396 1.40035 1.81921 2.77122 3.31099 3.39770 3.44686 3.66980 4.17036 4.47845 4.70608 5.00532 5.15022 5.31965 5.33841 5.44197 5.49744 5.54333 5.62315 5.67432 5.75981 5.83251 5.86608 5.98356 6.05938 6.08649 6.51160 6.62882 6.79948 6.89002 7.24487 7.53897 7.66573 7.80718 7.95873 8.70803 9.16938 9.63999 11.15096 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.008358 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.247676 B = 3349.479727 C = 5289.180822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.068 3.932 4 C 0.061 3.939 5 N -0.512 5.512 6 C 0.160 3.840 7 C -0.502 4.502 8 H 0.086 0.914 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.866 3.134 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.125 3.875 16 C 0.037 3.963 17 C -0.191 4.191 18 C -0.173 4.173 19 C 0.017 3.983 20 Cl 0.010 6.990 21 O -0.167 6.167 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.155 0.845 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 9.912 -9.164 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.010 4.010 4 C -0.067 4.067 5 N -0.236 5.236 6 C 0.034 3.966 7 C -0.540 4.540 8 H 0.104 0.896 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.693 3.307 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.003 4.003 16 C -0.014 4.014 17 C -0.211 4.211 18 C -0.193 4.193 19 C -0.060 4.060 20 Cl 0.039 6.961 21 O -0.064 6.064 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.172 0.828 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.793 9.285 -9.164 15.733 hybrid contribution 1.356 1.042 -0.365 1.748 sum -7.437 10.327 -9.529 15.899 Atomic orbital electron populations 1.22686 0.82711 1.02337 0.98908 1.88169 1.17876 1.26914 1.94996 1.22615 0.94570 0.85081 0.98693 1.22089 0.92153 0.97882 0.94577 1.61998 1.25350 1.35554 1.00728 1.20303 0.82771 0.95935 0.97618 1.21026 0.94644 1.06749 1.31590 0.89602 1.24867 0.98530 0.94885 0.94900 1.69891 1.25156 1.19891 1.38916 0.86996 0.84179 0.79571 0.79928 1.20361 1.21109 1.19077 1.20674 1.01408 0.92516 0.85690 1.22336 0.81381 1.02311 0.95377 1.21401 1.01055 1.02930 0.95731 1.21439 0.91052 1.05260 1.01574 1.22266 0.90606 1.03596 0.89513 1.98396 1.54072 1.90728 1.52897 1.83978 1.35002 1.57152 1.30277 0.89989 0.94921 0.94822 0.93734 0.94157 0.87944 0.94198 0.95082 0.99528 0.92777 0.88327 0.93985 0.82778 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.26 10.65 -35.23 -0.38 -6.63 16 3 C 0.07 0.99 6.08 37.15 0.23 1.22 16 4 C 0.06 1.08 5.17 -3.83 -0.02 1.06 16 5 N -0.51 -10.48 4.33 -237.51 -1.03 -11.51 16 6 C 0.16 3.93 3.67 -4.97 -0.02 3.92 16 7 C -0.50 -14.59 9.09 -34.44 -0.31 -14.90 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 11 Si 0.87 22.21 27.38 -169.99 -4.65 17.55 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.27 -6.73 6.67 56.52 0.38 -6.35 16 15 C 0.13 2.08 5.35 -4.98 -0.03 2.05 16 16 C 0.04 0.66 5.93 -35.63 -0.21 0.45 16 17 C -0.19 -3.04 10.81 -39.70 -0.43 -3.47 16 18 C -0.17 -2.64 10.88 -39.65 -0.43 -3.07 16 19 C 0.02 0.28 7.93 29.46 0.23 0.52 16 20 Cl 0.01 0.15 29.30 -51.86 -1.52 -1.37 16 21 O -0.17 -3.23 9.62 5.51 0.05 -3.17 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.04 0.51 6.37 -51.93 -0.33 0.18 16 27 H 0.10 2.13 7.37 -51.92 -0.38 1.74 16 28 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.03 0.81 5.44 -51.93 -0.28 0.53 16 30 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.10 1.32 6.25 -51.93 -0.32 1.00 16 33 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 34 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -33.09 311.36 -6.69 -39.78 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.65 Total: -3.17 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.03 Total: -8.78 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.26 Total: -38.90 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.32 Total: -9.81 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.65 Total: 17.55 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.52 Total: -1.37 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.09 -6.69 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.118 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds