Wall clock time and date at job start Mon Mar 30 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00205 * 2 1 4 4 C 1.52991 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47351 * 65.13267 * 4 3 2 6 6 C 1.46904 * 111.00251 * 194.52730 * 5 4 3 7 7 C 1.50700 * 109.47325 * 75.84198 * 6 5 4 8 8 H 1.08001 * 119.99957 * 4.49108 * 7 6 5 9 9 C 1.37877 * 119.99771 * 184.48591 * 7 6 5 10 10 N 1.31517 * 119.99944 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00116 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.47056 * 90.00115 * 11 9 7 13 13 H 1.48499 * 109.47347 * 209.99612 * 11 9 7 14 14 H 1.48495 * 109.47347 * 330.00164 * 11 9 7 15 15 C 1.46900 * 110.99990 * 70.57021 * 5 4 3 16 16 C 1.50694 * 109.46893 * 190.00248 * 15 5 4 17 17 C 1.34495 * 125.78144 * 90.00392 * 16 15 5 18 18 C 1.41406 * 106.85363 * 179.97438 * 17 16 15 19 19 C 1.34652 * 106.82831 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 125.80020 * 180.02562 * 19 18 17 21 21 O 1.34301 * 108.39973 * 359.73437 * 19 18 17 22 22 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47257 * 300.00415 * 1 2 3 24 24 H 1.08998 * 109.47195 * 59.99932 * 1 2 3 25 25 H 1.09007 * 109.46830 * 59.99614 * 3 2 1 26 26 H 1.08993 * 109.46749 * 300.00390 * 3 2 1 27 27 H 1.09012 * 109.47130 * 305.13631 * 4 3 2 28 28 H 1.09004 * 109.47527 * 185.13965 * 4 3 2 29 29 H 1.09000 * 109.47192 * 195.84727 * 6 5 4 30 30 H 1.09003 * 109.46458 * 315.84577 * 6 5 4 31 31 H 0.96995 * 120.00082 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46735 * 310.00009 * 15 5 4 33 33 H 1.08998 * 109.46882 * 69.99937 * 15 5 4 34 34 H 1.07994 * 126.57064 * 359.97438 * 17 16 15 35 35 H 1.07998 * 126.58811 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9771 0.5657 -1.2575 6 6 5.3734 0.1193 -1.1623 7 6 5.4419 -1.1459 -0.3464 8 1 4.5328 -1.6152 -0.0005 9 6 6.6651 -1.7042 -0.0416 10 7 6.7249 -2.8086 0.6701 11 14 8.2375 -0.8921 -0.6393 12 1 8.7083 0.0830 0.3771 13 1 9.2801 -1.9281 -0.8514 14 1 7.9743 -0.1854 -1.9185 15 6 3.7939 1.4839 -2.3894 16 6 4.0217 0.7412 -3.6806 17 6 3.0812 0.0952 -4.3927 18 6 3.7286 -0.4550 -5.5231 19 6 5.0275 -0.1113 -5.4341 20 17 6.2697 -0.5326 -6.5713 21 8 5.1976 0.6183 -4.3194 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8465 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8513 0.5662 0.8396 28 1 3.9785 2.1764 0.0914 29 1 5.7628 -0.0717 -2.1623 30 1 5.9706 0.8943 -0.6817 31 1 7.5854 -3.2012 0.8848 32 1 2.7794 1.8824 -2.3735 33 1 4.5077 2.3040 -2.3111 34 1 2.0326 0.0126 -4.1481 35 1 3.2694 -1.0381 -6.3076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093099868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:39 Heat of formation + Delta-G solvation = -40.352973 kcal Electronic energy + Delta-G solvation = -19297.552761 eV Core-core repulsion = 16130.374691 eV Total energy + Delta-G solvation = -3167.178070 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.63624 -39.32070 -38.01618 -37.72057 -34.74711 -34.11879 -31.94224 -31.14482 -28.76163 -26.98989 -25.98004 -23.77509 -22.93123 -22.16011 -21.16279 -19.05563 -18.67966 -17.57236 -17.27572 -17.14784 -16.42423 -16.11990 -16.04460 -15.36334 -15.08314 -14.53275 -14.39829 -14.25185 -13.85523 -13.62348 -13.49918 -13.21379 -13.13109 -12.75794 -12.62323 -12.46426 -12.29691 -12.20320 -11.87990 -11.55629 -11.47211 -10.90931 -10.77956 -10.38342 -9.39540 -9.01156 -8.27851 -6.28961 0.19456 0.54454 1.27414 1.31441 1.41973 1.55366 2.31543 2.43088 3.05190 3.08922 3.25133 3.77495 3.99538 4.19859 4.27000 4.33775 4.40054 4.57241 4.59998 4.65134 4.67364 4.71272 4.83622 4.87344 4.91640 4.95332 4.98684 5.16153 5.46370 5.57103 5.91137 6.02268 6.29689 6.55515 6.62620 6.79400 7.33456 8.89317 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.008358 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.247676 B = 3349.479727 C = 5289.180822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.530 5.530 6 C 0.174 3.826 7 C -0.503 4.503 8 H 0.038 0.962 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.935 3.065 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.260 1.260 15 C 0.128 3.872 16 C 0.007 3.993 17 C -0.187 4.187 18 C -0.167 4.167 19 C -0.007 4.007 20 Cl 0.023 6.977 21 O -0.195 6.195 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.020 0.980 30 H -0.010 1.010 31 H 0.265 0.735 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.178 0.822 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 11.849 -10.456 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.004 4.004 4 C -0.069 4.069 5 N -0.255 5.255 6 C 0.047 3.953 7 C -0.542 4.542 8 H 0.056 0.944 9 C -0.186 4.186 10 N -0.588 5.588 11 Si 0.759 3.241 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.184 1.184 15 C 0.001 3.999 16 C -0.043 4.043 17 C -0.206 4.206 18 C -0.187 4.187 19 C -0.083 4.083 20 Cl 0.052 6.948 21 O -0.094 6.094 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.008 0.992 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.195 0.805 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.638 11.245 -10.458 18.131 hybrid contribution 1.487 0.390 0.024 1.537 sum -8.151 11.635 -10.434 17.626 Atomic orbital electron populations 1.22855 0.80374 1.02973 1.00757 1.88106 1.20627 1.28708 1.95424 1.22643 0.91880 0.84655 1.01236 1.22133 0.94947 0.97907 0.91926 1.61823 1.22354 1.38258 1.03087 1.19937 0.85820 0.93913 0.95646 1.21213 0.92942 1.08330 1.31700 0.94393 1.25744 1.02337 0.95465 0.95097 1.70046 1.26260 1.21747 1.40704 0.85889 0.79493 0.78847 0.79839 1.18600 1.20633 1.18402 1.20834 1.03785 0.91700 0.83620 1.22720 0.81562 1.03805 0.96246 1.21794 1.01936 1.01580 0.95317 1.21870 0.90425 1.04503 1.01899 1.22730 0.91873 1.04072 0.89609 1.98392 1.53668 1.90571 1.52162 1.83932 1.36084 1.58063 1.31288 0.90142 0.93150 0.92735 0.91160 0.91321 0.92294 0.91542 0.96235 0.99208 0.92552 0.84630 0.93037 0.80477 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.78 10.65 -148.98 -1.59 -15.37 16 3 C 0.07 1.95 6.08 71.98 0.44 2.39 16 4 C 0.06 2.02 5.17 86.30 0.45 2.47 16 5 N -0.53 -21.38 4.33 -905.36 -3.92 -25.30 16 6 C 0.17 8.61 3.67 85.56 0.31 8.93 16 7 C -0.50 -30.31 9.09 25.60 0.23 -30.08 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 9 C 0.01 0.65 5.47 84.65 0.46 1.11 16 10 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 11 Si 0.94 46.33 27.38 68.60 1.88 48.21 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.26 -12.52 6.67 99.48 0.66 -11.86 16 15 C 0.13 3.95 5.35 85.55 0.46 4.41 16 16 C 0.01 0.23 5.93 24.83 0.15 0.38 16 17 C -0.19 -5.50 10.81 22.19 0.24 -5.26 16 18 C -0.17 -4.74 10.88 22.23 0.24 -4.50 16 19 C -0.01 -0.23 7.93 67.00 0.53 0.30 16 20 Cl 0.02 0.66 29.30 -2.72 -0.08 0.58 16 21 O -0.19 -7.37 9.62 -3.19 -0.03 -7.40 16 22 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.45 6.37 -2.39 -0.02 1.43 16 27 H 0.06 2.53 7.37 -2.38 -0.02 2.52 16 28 H 0.07 1.91 8.07 -2.38 -0.02 1.89 16 29 H 0.02 1.02 5.44 -2.39 -0.01 1.01 16 30 H -0.01 -0.47 7.18 -2.39 -0.02 -0.49 16 31 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 32 H 0.14 3.10 6.25 -2.38 -0.01 3.09 16 33 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.18 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -74.73 311.36 2.36 -72.36 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.04 Total: 5.79 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.76 Total: -18.01 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.62 Total: -86.17 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.62 Total: -22.77 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.21 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.08 Total: 0.58 kcal Total: -74.73 2.36 -72.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.011 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds