Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.40792 * 119.99900 * 2 1 4 4 C 1.40227 * 126.06793 * 205.02941 * 3 2 1 5 5 N 1.30859 * 108.36485 * 180.19557 * 4 3 2 6 6 N 1.40078 * 108.35885 * 359.63967 * 5 4 3 7 7 C 1.46500 * 126.06993 * 180.14908 * 6 5 4 8 8 C 1.35702 * 126.07055 * 24.99034 * 3 2 1 9 9 S 1.65604 * 119.99948 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.27912 * 26.06617 * 9 2 1 11 11 O 1.42093 * 104.27634 * 153.92525 * 9 2 1 12 12 C 1.81406 * 104.44670 * 269.99678 * 9 2 1 13 13 C 1.52998 * 109.47077 * 180.02562 * 12 9 2 14 14 C 1.50694 * 109.47153 * 179.97438 * 13 12 9 15 15 H 1.08007 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00175 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99878 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00193 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47380 * 89.99710 * 18 16 14 20 20 H 1.48504 * 109.47251 * 209.99918 * 18 16 14 21 21 H 1.48505 * 109.46957 * 329.99729 * 18 16 14 22 22 H 1.08996 * 109.47277 * 89.99872 * 1 2 3 23 23 H 1.09001 * 109.46788 * 209.99633 * 1 2 3 24 24 H 1.09002 * 109.46801 * 329.99327 * 1 2 3 25 25 H 1.08002 * 125.81425 * 359.92397 * 4 3 2 26 26 H 1.09001 * 109.46995 * 270.24970 * 7 6 5 27 27 H 1.08999 * 109.47164 * 30.25128 * 7 6 5 28 28 H 1.08996 * 109.47123 * 150.25304 * 7 6 5 29 29 H 1.08003 * 126.21861 * 0.03142 * 8 3 2 30 30 H 1.09003 * 109.46915 * 299.99986 * 12 9 2 31 31 H 1.08999 * 109.46970 * 59.99618 * 12 9 2 32 32 H 1.08994 * 109.47140 * 300.00037 * 13 12 9 33 33 H 1.09007 * 109.47095 * 59.99641 * 13 12 9 34 34 H 0.97004 * 119.99692 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1690 1.2193 0.0000 4 6 3.4712 1.4208 -0.4796 5 7 3.7838 2.6798 -0.3074 6 7 2.6907 3.3294 0.2803 7 6 2.6212 4.7482 0.6386 8 6 1.7075 2.4083 0.4634 9 16 2.2930 -1.4342 -0.0006 10 8 1.3970 -2.3560 -0.6062 11 8 3.5394 -1.1189 -0.6058 12 6 2.5194 -1.8269 1.7559 13 6 3.2820 -3.1465 1.8893 14 6 3.4706 -3.4724 3.3484 15 1 3.0847 -2.8052 4.1050 16 6 4.1348 -4.6228 3.7176 17 7 4.6043 -5.4355 2.7963 18 14 4.3680 -5.0271 5.5264 19 1 3.2174 -5.8343 6.0055 20 1 5.6232 -5.8009 5.7028 21 1 4.4490 -3.7675 6.3087 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 4.1092 0.6647 -0.9128 26 1 2.9804 4.8832 1.6588 27 1 3.2427 5.3265 -0.0450 28 1 1.5887 5.0904 0.5687 29 1 0.7358 2.5899 0.8985 30 1 3.0867 -1.0296 2.2362 31 1 1.5452 -1.9195 2.2359 32 1 2.7151 -3.9439 1.4089 33 1 4.2563 -3.0533 1.4092 34 1 5.0713 -6.2451 3.0561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096421257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = -12.890170 kcal Electronic energy + Delta-G solvation = -19164.311542 eV Core-core repulsion = 16032.660805 eV Total energy + Delta-G solvation = -3131.650736 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11918 -38.28066 -37.28430 -36.91853 -35.89461 -33.77855 -33.12873 -30.41219 -28.24894 -27.60950 -26.25269 -23.61701 -22.51003 -21.66835 -20.12275 -19.07894 -18.44346 -17.70566 -17.21082 -17.07623 -16.53401 -16.27828 -15.85261 -15.28755 -15.09413 -14.84582 -14.45253 -14.15088 -13.73796 -13.56346 -13.45622 -13.41234 -13.22227 -13.01584 -12.93049 -12.79072 -12.42900 -12.24761 -12.12201 -11.80654 -11.74481 -11.37202 -11.00558 -10.64284 -10.35144 -8.78153 -8.25524 -6.39974 -0.79756 0.86632 1.40824 1.41576 1.42989 1.54032 1.73331 1.91304 2.38315 2.80241 3.07536 3.15447 3.60959 3.75801 4.00859 4.09273 4.15579 4.37413 4.53273 4.59128 4.65642 4.74766 4.77255 4.79422 4.95737 5.19559 5.25651 5.26855 5.35261 5.68180 5.82747 6.06337 6.17264 6.65190 6.73208 7.30167 8.86507 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.004940 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.131777 B = 5666.756380 C = 6186.442295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.917 5.917 3 C -0.019 4.019 4 C 0.010 3.990 5 N -0.314 5.314 6 N -0.375 5.375 7 C 0.096 3.904 8 C 0.055 3.945 9 S 2.612 3.388 10 O -0.983 6.983 11 O -0.983 6.983 12 C -0.584 4.584 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.259 1.259 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.196 0.804 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.226 0.774 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.009 0.991 33 H 0.006 0.994 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 20.499 -1.603 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.748 5.748 3 C -0.124 4.124 4 C -0.178 4.178 5 N -0.137 5.137 6 N -0.160 5.160 7 C -0.043 4.043 8 C -0.095 4.095 9 S 2.711 3.289 10 O -0.973 6.973 11 O -0.973 6.973 12 C -0.716 4.716 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.183 1.183 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.130 0.870 25 H 0.212 0.788 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.142 0.858 29 H 0.243 0.757 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.726 20.895 -2.561 23.189 hybrid contribution -0.138 -1.296 1.188 1.763 sum -9.864 19.599 -1.373 21.984 Atomic orbital electron populations 1.21940 0.75377 1.05474 1.03760 1.54687 1.15819 1.17041 1.87208 1.17651 0.94489 0.87985 1.12253 1.24883 0.96924 0.94666 1.01287 1.77321 1.10475 1.06802 1.19139 1.48847 1.09669 1.10176 1.47344 1.22263 1.06291 0.73293 1.02470 1.22715 0.97217 0.87649 1.01907 1.04983 0.72929 0.72409 0.78544 1.93509 1.65441 1.62943 1.75438 1.93377 1.45758 1.82530 1.75616 1.30344 1.10800 1.07672 1.22750 1.18826 0.94222 0.89735 0.99001 1.21500 1.36932 1.07419 0.92022 0.90769 1.26108 0.94843 0.95989 1.03174 1.70105 1.38349 1.13324 1.35541 0.85312 0.77821 0.78718 0.78402 1.19353 1.20829 1.18329 0.91636 0.89890 0.86953 0.78775 0.89531 0.89172 0.85824 0.75733 0.84889 0.83787 0.97232 0.97534 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 10.11 127.77 1.29 2.74 16 2 N -0.92 -25.04 3.35 -361.33 -1.21 -26.25 16 3 C -0.02 -0.51 6.47 37.60 0.24 -0.27 16 4 C 0.01 0.32 10.80 85.32 0.92 1.24 16 5 N -0.31 -9.52 12.57 -56.77 -0.71 -10.23 16 6 N -0.38 -7.75 4.04 -368.40 -1.49 -9.24 16 7 C 0.10 0.89 11.48 127.77 1.47 2.36 16 8 C 0.06 1.04 10.82 83.46 0.90 1.94 16 9 S 2.61 96.80 5.35 -56.49 -0.30 96.49 16 10 O -0.98 -41.03 17.09 -127.65 -2.18 -43.21 16 11 O -0.98 -41.65 14.11 -127.65 -1.80 -43.45 16 12 C -0.58 -22.73 6.12 71.98 0.44 -22.29 16 13 C 0.02 1.12 4.98 29.85 0.15 1.27 16 14 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 15 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 18 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.49 7.79 -2.39 -0.02 1.48 16 24 H 0.11 1.10 6.71 -2.39 -0.02 1.08 16 25 H 0.20 7.27 5.55 -2.91 -0.02 7.25 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.23 1.75 7.19 -2.91 -0.02 1.73 16 30 H 0.13 4.80 8.14 -2.39 -0.02 4.78 16 31 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.01 0.36 8.14 -2.38 -0.02 0.35 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -81.39 304.44 1.82 -79.57 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.10 Total: 10.42 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 6.11 Total: -42.72 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.13 Total: -102.61 kcal Atomic # 8 Polarization: -82.67 SS G_CDS: -3.98 Total: -86.66 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 96.80 SS G_CDS: -0.30 Total: 96.49 kcal Total: -81.39 1.82 -79.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.677 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds