Wall clock time and date at job start Mon Mar 30 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38968 * 124.29149 * 2 1 4 4 C 1.39036 * 131.65494 * 0.03675 * 3 2 1 5 5 C 1.38051 * 120.14160 * 179.97438 * 4 3 2 6 6 C 1.38575 * 120.65642 * 359.97438 * 5 4 3 7 7 C 1.37970 * 120.09313 * 0.02562 * 6 5 4 8 8 C 1.39251 * 119.71658 * 359.66925 * 7 6 5 9 9 C 1.47868 * 133.23483 * 179.58158 * 8 7 6 10 10 N 1.31448 * 127.50499 * 0.77412 * 9 8 7 11 11 N 1.29002 * 119.99472 * 179.70316 * 10 9 8 12 12 C 1.34777 * 119.99746 * 179.72233 * 11 10 9 13 13 O 1.21803 * 120.00084 * 0.28100 * 12 11 10 14 14 C 1.41399 * 120.00234 * 180.27905 * 12 11 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 12 11 16 16 C 1.40261 * 120.00072 * 180.02562 * 14 12 11 17 17 N 1.30564 * 120.00191 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47034 * 59.99583 * 18 16 14 20 20 H 1.48490 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46993 * 299.99656 * 18 16 14 22 22 C 1.34398 * 124.28748 * 180.02562 * 2 1 3 23 23 O 1.21652 * 126.05880 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46936 * 299.98206 * 1 2 3 26 26 H 1.08999 * 109.47102 * 59.98547 * 1 2 3 27 27 H 1.07999 * 119.92499 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.67438 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.95131 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.13646 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00466 * 0.02562 * 11 10 9 32 32 H 0.96996 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2480 1.1481 0.0000 4 6 1.9104 2.4969 0.0007 5 6 2.9002 3.4592 0.0010 6 6 4.2378 3.0971 0.0013 7 6 4.5936 1.7641 0.0006 8 6 3.6031 0.7853 0.0067 9 6 3.6399 -0.6929 0.0000 10 7 4.7022 -1.4671 -0.0003 11 7 4.5655 -2.7498 -0.0009 12 6 5.6546 -3.5436 -0.0068 13 8 6.7681 -3.0499 -0.0064 14 6 5.5048 -4.9496 -0.0134 15 1 4.5175 -5.3874 -0.0132 16 6 6.6384 -5.7757 -0.0190 17 7 7.8319 -5.2464 -0.0186 18 14 6.4404 -7.6332 -0.0284 19 1 5.6903 -8.0449 -1.2422 20 1 7.7800 -8.2737 -0.0339 21 1 5.6933 -8.0575 1.1828 22 6 2.2222 -1.1104 -0.0005 23 8 1.8130 -2.2561 -0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8902 26 1 -0.3633 0.5141 -0.8898 27 1 0.8716 2.7922 0.0009 28 1 2.6294 4.5047 0.0020 29 1 5.0028 3.8594 0.0020 30 1 5.6358 1.4811 0.0012 31 1 3.6788 -3.1431 -0.0015 32 1 8.6158 -5.8176 -0.0229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100530096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:31 Heat of formation + Delta-G solvation = 11.922255 kcal Electronic energy + Delta-G solvation = -19888.548599 eV Core-core repulsion = 16622.529859 eV Total energy + Delta-G solvation = -3266.018740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34192 -39.15174 -38.03547 -35.95786 -35.59162 -32.98121 -32.38734 -30.18376 -29.62349 -27.59776 -26.87750 -24.32506 -22.22323 -21.28740 -21.09681 -19.70408 -18.22157 -17.35300 -16.66085 -15.94420 -15.88361 -15.62863 -15.38905 -14.34743 -14.20782 -14.04900 -13.87170 -13.24477 -13.17733 -12.98339 -12.70551 -12.46843 -11.98641 -11.62845 -11.62256 -11.39387 -11.05018 -10.96631 -10.85108 -10.53852 -10.31486 -9.31125 -9.21413 -9.08487 -8.16551 -7.99332 -7.35427 -6.65480 -5.20907 0.89588 1.43411 2.09964 2.83308 2.97966 3.02413 3.05336 3.44364 3.60889 3.96272 3.98234 4.23787 4.40356 4.79601 5.02718 5.06329 5.24580 5.27512 5.36850 5.41384 5.48632 5.55143 5.68786 5.90029 6.03619 6.26211 6.48516 6.65830 6.80923 6.88665 7.00092 7.20760 7.45049 7.73584 8.08792 8.44577 8.50537 8.88704 10.10418 10.26920 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004476 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.984582 B = 6253.569564 C = 7173.390658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.545 5.545 3 C 0.134 3.866 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.140 4.140 7 C -0.064 4.064 8 C -0.041 4.041 9 C -0.106 4.106 10 N -0.058 5.058 11 N -0.481 5.481 12 C 0.527 3.473 13 O -0.532 6.532 14 C -0.516 4.516 15 H 0.080 0.920 16 C 0.084 3.916 17 N -0.734 5.734 18 Si 0.925 3.075 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.262 1.262 22 C 0.544 3.456 23 O -0.529 6.529 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.392 0.608 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 12.083 0.019 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.266 5.266 3 C 0.035 3.965 4 C -0.157 4.157 5 C -0.119 4.119 6 C -0.159 4.159 7 C -0.084 4.084 8 C -0.046 4.046 9 C -0.279 4.279 10 N 0.106 4.894 11 N -0.234 5.234 12 C 0.339 3.661 13 O -0.410 6.410 14 C -0.552 4.552 15 H 0.098 0.902 16 C -0.141 4.141 17 N -0.360 5.360 18 Si 0.748 3.252 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.186 1.186 22 C 0.335 3.665 23 O -0.404 6.404 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.234 0.766 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.710 11.457 0.020 15.018 hybrid contribution -1.530 -1.112 -0.005 1.891 sum -11.240 10.345 0.016 15.276 Atomic orbital electron populations 1.21775 0.77582 1.04469 1.02210 1.45170 1.06732 1.05580 1.69111 1.18212 0.89443 0.87789 1.01007 1.20109 0.99819 0.88900 1.06861 1.20824 0.92444 0.98558 1.00088 1.20962 0.96138 0.95505 1.03293 1.20691 0.99109 0.91275 0.97354 1.18360 0.92237 0.89871 1.04174 1.22006 0.88400 0.93609 1.23932 1.71443 1.26764 0.95321 0.95900 1.46346 1.14340 1.00407 1.62295 1.17401 0.81678 0.86652 0.80411 1.90727 1.22655 1.74944 1.52643 1.20017 0.95093 0.89009 1.51081 0.90170 1.25842 0.94181 1.01701 0.92397 1.69945 0.98748 1.37787 1.29570 0.86116 0.78590 0.80380 0.80122 1.18648 1.19952 1.18644 1.19173 0.87337 0.83908 0.76058 1.90757 1.79393 1.18684 1.51571 0.89238 0.91315 0.91319 0.86058 0.85702 0.85612 0.84908 0.76646 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.93 59.85 0.65 1.54 16 2 N -0.54 -8.42 3.13 -121.79 -0.38 -8.80 16 3 C 0.13 1.99 6.74 -83.56 -0.56 1.43 16 4 C -0.14 -1.54 9.88 -39.35 -0.39 -1.93 16 5 C -0.10 -1.02 10.01 -39.53 -0.40 -1.42 16 6 C -0.14 -1.61 10.04 -39.56 -0.40 -2.00 16 7 C -0.06 -0.95 10.09 -39.30 -0.40 -1.34 16 8 C -0.04 -0.71 6.35 -104.81 -0.67 -1.37 16 9 C -0.11 -2.18 7.52 -80.19 -0.60 -2.78 16 10 N -0.06 -1.40 10.67 34.76 0.37 -1.03 16 11 N -0.48 -12.13 5.87 29.05 0.17 -11.96 16 12 C 0.53 15.12 7.64 -15.06 -0.12 15.01 16 13 O -0.53 -17.07 15.18 5.10 0.08 -17.00 16 14 C -0.52 -14.05 9.30 -37.62 -0.35 -14.40 16 15 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 16 C 0.08 2.20 5.50 -17.33 -0.10 2.10 16 17 N -0.73 -20.52 11.72 55.56 0.65 -19.87 16 18 Si 0.93 18.76 29.56 -169.99 -5.03 13.73 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C 0.54 10.57 7.92 -12.52 -0.10 10.47 16 23 O -0.53 -11.25 15.23 5.23 0.08 -11.17 16 24 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.39 9.29 6.02 -190.12 -1.14 8.15 16 32 H 0.28 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -33.56 292.86 -6.68 -40.23 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.62 Total: 6.14 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.42 Total: 5.30 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.81 Total: -41.66 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.16 Total: -28.16 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.56 -6.68 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100530096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.157 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds