Wall clock time and date at job start Mon Mar 30 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38968 * 124.29149 * 2 1 4 4 C 1.39036 * 131.65494 * 0.03675 * 3 2 1 5 5 C 1.38051 * 120.14160 * 179.97438 * 4 3 2 6 6 C 1.38575 * 120.65642 * 359.97438 * 5 4 3 7 7 C 1.37970 * 120.09313 * 0.02562 * 6 5 4 8 8 C 1.39251 * 119.71658 * 359.66925 * 7 6 5 9 9 C 1.47868 * 133.23483 * 179.58158 * 8 7 6 10 10 N 1.31448 * 127.50499 * 0.77412 * 9 8 7 11 11 N 1.29002 * 119.99472 * 179.70316 * 10 9 8 12 12 C 1.34777 * 119.99746 * 179.72233 * 11 10 9 13 13 O 1.21803 * 120.00084 * 0.28100 * 12 11 10 14 14 C 1.41399 * 120.00234 * 180.27905 * 12 11 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 12 11 16 16 C 1.40261 * 120.00072 * 180.02562 * 14 12 11 17 17 N 1.30564 * 120.00191 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99811 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47034 * 59.99583 * 18 16 14 20 20 H 1.48490 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46993 * 299.99656 * 18 16 14 22 22 C 1.34398 * 124.28748 * 180.02562 * 2 1 3 23 23 O 1.21652 * 126.05880 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46936 * 299.98206 * 1 2 3 26 26 H 1.08999 * 109.47102 * 59.98547 * 1 2 3 27 27 H 1.07999 * 119.92499 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.67438 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.95131 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.13646 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00466 * 0.02562 * 11 10 9 32 32 H 0.96996 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2480 1.1481 0.0000 4 6 1.9104 2.4969 0.0007 5 6 2.9002 3.4592 0.0010 6 6 4.2378 3.0971 0.0013 7 6 4.5936 1.7641 0.0006 8 6 3.6031 0.7853 0.0067 9 6 3.6399 -0.6929 0.0000 10 7 4.7022 -1.4671 -0.0003 11 7 4.5655 -2.7498 -0.0009 12 6 5.6546 -3.5436 -0.0068 13 8 6.7681 -3.0499 -0.0064 14 6 5.5048 -4.9496 -0.0134 15 1 4.5175 -5.3874 -0.0132 16 6 6.6384 -5.7757 -0.0190 17 7 7.8319 -5.2464 -0.0186 18 14 6.4404 -7.6332 -0.0284 19 1 5.6903 -8.0449 -1.2422 20 1 7.7800 -8.2737 -0.0339 21 1 5.6933 -8.0575 1.1828 22 6 2.2222 -1.1104 -0.0005 23 8 1.8130 -2.2561 -0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8902 26 1 -0.3633 0.5141 -0.8898 27 1 0.8716 2.7922 0.0009 28 1 2.6294 4.5047 0.0020 29 1 5.0028 3.8594 0.0020 30 1 5.6358 1.4811 0.0012 31 1 3.6788 -3.1431 -0.0015 32 1 8.6158 -5.8176 -0.0229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100530096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:30 Heat of formation + Delta-G solvation = -12.838986 kcal Electronic energy + Delta-G solvation = -19889.622327 eV Core-core repulsion = 16622.529859 eV Total energy + Delta-G solvation = -3267.092468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.71530 -40.89808 -39.41134 -37.85075 -36.91752 -34.96207 -33.87582 -31.35010 -31.13001 -28.94652 -28.54348 -25.73266 -23.40803 -22.87037 -22.53891 -21.28966 -19.88951 -18.89190 -18.10223 -17.80099 -17.31078 -16.85896 -16.68669 -16.10394 -15.99681 -15.20408 -14.94570 -14.87192 -14.45269 -14.42355 -13.94324 -13.48101 -13.35947 -13.35311 -13.28536 -13.00496 -12.74131 -12.67664 -12.10269 -11.94060 -11.39834 -11.11046 -10.78297 -10.55906 -10.34599 -9.26445 -8.81072 -8.62379 -7.32646 -0.56989 0.37627 0.85006 1.34846 1.36995 1.52738 1.61735 1.87890 1.92159 2.23627 2.29096 2.92151 3.01955 3.33984 3.67694 3.80360 4.08222 4.22954 4.30791 4.40697 4.49408 4.59133 4.70843 4.73740 5.01308 5.01694 5.12401 5.45006 5.50254 5.63822 5.64468 5.69548 5.76597 6.11992 6.46353 6.50852 6.68255 7.05824 8.10661 8.31184 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004476 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.984582 B = 6253.569564 C = 7173.390658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.535 5.535 3 C 0.128 3.872 4 C -0.120 4.120 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.076 4.076 8 C -0.096 4.096 9 C -0.073 4.073 10 N -0.124 5.124 11 N -0.507 5.507 12 C 0.518 3.482 13 O -0.588 6.588 14 C -0.545 4.545 15 H 0.096 0.904 16 C 0.032 3.968 17 N -0.785 5.785 18 Si 1.015 2.985 19 H -0.251 1.251 20 H -0.261 1.261 21 H -0.251 1.251 22 C 0.533 3.467 23 O -0.553 6.553 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.116 0.884 31 H 0.393 0.607 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 14.839 0.012 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.256 5.256 3 C 0.030 3.970 4 C -0.141 4.141 5 C -0.093 4.093 6 C -0.150 4.150 7 C -0.097 4.097 8 C -0.101 4.101 9 C -0.253 4.253 10 N 0.048 4.952 11 N -0.257 5.257 12 C 0.331 3.669 13 O -0.471 6.471 14 C -0.580 4.580 15 H 0.114 0.886 16 C -0.189 4.189 17 N -0.412 5.412 18 Si 0.831 3.169 19 H -0.174 1.174 20 H -0.185 1.185 21 H -0.174 1.174 22 C 0.322 3.678 23 O -0.431 6.431 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.182 0.818 28 H 0.193 0.807 29 H 0.176 0.824 30 H 0.134 0.866 31 H 0.235 0.765 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.784 14.256 0.014 19.149 hybrid contribution -0.834 -1.416 -0.003 1.643 sum -13.618 12.841 0.011 18.717 Atomic orbital electron populations 1.22171 0.74351 1.04906 1.05225 1.45198 1.08459 1.04454 1.67513 1.18545 0.87927 0.89009 1.01488 1.20664 1.02429 0.86779 1.04204 1.21470 0.91179 1.00769 0.95885 1.21383 0.98173 0.94177 1.01219 1.20826 0.98134 0.92802 0.97894 1.18574 0.94683 0.88047 1.08810 1.22991 0.88912 0.95689 1.17679 1.71414 1.28611 0.95014 1.00185 1.45577 1.13068 1.00823 1.66249 1.17748 0.81713 0.87695 0.79723 1.90647 1.24695 1.76163 1.55644 1.20540 0.96604 0.89034 1.51775 0.88581 1.27205 0.93090 1.07875 0.90729 1.70075 1.00139 1.40607 1.30343 0.84822 0.79284 0.72030 0.80764 1.17443 1.18533 1.17428 1.19175 0.87503 0.84656 0.76476 1.90726 1.79749 1.19991 1.52591 0.90273 0.88209 0.88215 0.81812 0.80735 0.82423 0.86586 0.76501 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.93 127.77 1.40 2.74 16 2 N -0.54 -15.60 3.13 -657.67 -2.06 -17.66 16 3 C 0.13 3.45 6.74 38.70 0.26 3.71 16 4 C -0.12 -2.01 9.88 22.42 0.22 -1.78 16 5 C -0.07 -1.03 10.01 22.31 0.22 -0.80 16 6 C -0.13 -2.46 10.04 22.29 0.22 -2.24 16 7 C -0.08 -2.21 10.09 22.45 0.23 -1.98 16 8 C -0.10 -3.31 6.35 -19.99 -0.13 -3.44 16 9 C -0.07 -3.18 7.52 44.28 0.33 -2.85 16 10 N -0.12 -6.47 10.67 -43.95 -0.47 -6.94 16 11 N -0.51 -27.99 5.87 -180.17 -1.06 -29.05 16 12 C 0.52 32.36 7.64 85.02 0.65 33.01 16 13 O -0.59 -41.19 15.18 -4.68 -0.07 -41.26 16 14 C -0.54 -31.51 9.30 23.54 0.22 -31.29 16 15 H 0.10 5.01 7.85 -2.91 -0.02 4.99 16 16 C 0.03 1.72 5.50 85.37 0.47 2.19 16 17 N -0.78 -46.33 11.72 21.87 0.26 -46.07 16 18 Si 1.01 39.16 29.56 68.60 2.03 41.18 16 19 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 21 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 22 C 0.53 21.25 7.92 86.83 0.69 21.94 16 23 O -0.55 -24.55 15.23 -4.20 -0.06 -24.61 16 24 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 25 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.39 20.41 6.02 -219.72 -1.32 19.09 16 32 H 0.29 15.12 8.29 -92.71 -0.77 14.35 16 Total: -1.00 -83.51 292.86 3.21 -80.30 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.14 Total: 24.91 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 4.78 Total: 19.20 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -3.33 Total: -99.72 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -0.13 Total: -65.88 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -83.51 3.21 -80.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100530096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.466 kcal (2) G-P(sol) polarization free energy of solvation -83.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds