Wall clock time and date at job start Mon Mar 30 2020 00:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 C 1.76207 * 107.21640 * 89.99855 * 14 12 2 18 18 C 1.35317 * 126.12608 * 269.69209 * 17 14 12 19 19 C 1.39868 * 107.91771 * 179.90647 * 18 17 14 20 20 N 1.30831 * 108.20235 * 0.36305 * 19 18 17 21 21 N 1.34936 * 126.12681 * 90.00142 * 17 14 12 22 22 C 1.46507 * 126.03919 * 359.94576 * 21 17 14 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 30 30 H 1.08004 * 126.04142 * 0.03027 * 18 17 14 31 31 H 1.08003 * 125.89289 * 180.14211 * 19 18 17 32 32 H 1.08995 * 109.46977 * 89.99747 * 22 21 17 33 33 H 1.09001 * 109.46703 * 209.99907 * 22 21 17 34 34 H 1.08997 * 109.46765 * 329.99755 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 6 4.6445 -0.1180 -1.7880 18 6 5.3464 0.6816 -0.9519 19 6 6.6305 0.1434 -0.8187 20 7 6.6996 -0.9360 -1.5547 21 7 5.4581 -1.1220 -2.1765 22 6 5.1054 -2.2138 -3.0874 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1615 3.4845 27 1 0.7377 -2.1443 -1.9995 28 1 2.4630 -2.5817 -1.9865 29 1 1.5296 -2.5968 -0.4710 30 1 4.9792 1.5761 -0.4707 31 1 7.4283 0.5508 -0.2154 32 1 5.3331 -1.9201 -4.1120 33 1 5.6799 -3.1032 -2.8281 34 1 4.0408 -2.4306 -2.9996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129798901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:47 Heat of formation + Delta-G solvation = 14.636960 kcal Electronic energy + Delta-G solvation = -20246.118455 eV Core-core repulsion = 17115.661384 eV Total energy + Delta-G solvation = -3130.457070 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95219 -36.98247 -36.31904 -35.49915 -33.14628 -32.69307 -30.23192 -29.20386 -26.69609 -25.66773 -25.25097 -21.97798 -21.11280 -20.80264 -18.47279 -17.54644 -17.01020 -16.52844 -15.46789 -15.30442 -15.11913 -14.68681 -13.94914 -13.65281 -13.56678 -13.26455 -12.90567 -12.69347 -12.51279 -12.12841 -11.88477 -11.63450 -11.52342 -11.32739 -11.29853 -11.04310 -10.92379 -10.59698 -10.49830 -10.29174 -10.16169 -9.60586 -9.33502 -8.56696 -8.54216 -8.11903 -6.15566 -4.24098 0.72435 1.53039 2.53916 2.82802 3.20794 3.29759 3.32165 3.48488 4.08072 4.31373 4.52443 4.79722 5.15628 5.19179 5.22741 5.35597 5.57899 5.62294 5.64286 6.02522 6.03415 6.17980 6.53309 6.70954 6.76934 6.79855 6.88710 7.01303 7.30200 7.53617 7.61408 7.69886 7.96363 8.16849 8.78544 9.42783 10.89554 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.008447 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.647557 B = 3314.120782 C = 3981.751693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.264 3.736 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.972 5.972 13 C 0.102 3.898 14 S 2.699 3.301 15 O -0.970 6.970 16 O -0.941 6.941 17 C -0.481 4.481 18 C -0.145 4.145 19 C 0.028 3.972 20 N -0.269 5.269 21 N -0.317 5.317 22 C 0.087 3.913 23 H 0.034 0.966 24 H 0.095 0.905 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.191 0.809 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -4.110 -7.309 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.814 5.814 13 C -0.044 4.044 14 S 2.783 3.217 15 O -0.960 6.960 16 O -0.930 6.930 17 C -0.688 4.688 18 C -0.176 4.176 19 C -0.156 4.156 20 N -0.094 5.094 21 N -0.102 5.102 22 C -0.053 4.053 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.208 0.792 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.542 -4.606 -8.376 11.049 hybrid contribution 0.490 -0.081 1.775 1.843 sum 6.032 -4.687 -6.601 10.096 Atomic orbital electron populations 1.22058 0.97368 0.99884 1.01045 1.18883 0.92145 0.92938 0.79826 0.91915 1.21374 1.31990 1.13250 0.90118 0.91932 1.24890 0.94838 0.94939 0.98960 1.69883 1.36084 1.22482 1.23841 0.86483 0.78647 0.79671 0.82853 1.19882 1.20851 1.20920 1.57477 1.61812 1.21797 1.40307 1.21337 0.99112 0.81560 1.02380 1.02043 0.72221 0.74106 0.73311 1.93519 1.85732 1.75649 1.41135 1.93600 1.82633 1.30615 1.86180 1.34073 1.22538 0.99201 1.12992 1.21610 0.93604 1.02189 1.00238 1.24032 0.98210 0.93898 0.99497 1.77131 1.01929 1.19016 1.11371 1.48107 1.07502 1.19535 1.35020 1.22249 1.03036 0.87730 0.92317 0.94704 0.88636 0.96621 0.92577 0.92970 0.93384 0.89693 0.81781 0.79229 0.89651 0.88865 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.97 37.16 0.33 -2.92 16 2 C 0.26 6.19 2.62 -69.08 -0.18 6.01 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 4 C -0.53 -13.21 7.99 -34.44 -0.28 -13.48 16 5 H 0.06 1.56 7.33 -52.48 -0.38 1.17 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -23.60 11.32 55.43 0.63 -22.97 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.97 -19.24 3.06 -115.84 -0.35 -19.60 16 13 C 0.10 1.68 9.28 59.85 0.56 2.24 16 14 S 2.70 51.55 5.59 -107.50 -0.60 50.94 16 15 O -0.97 -17.91 14.86 -57.17 -0.85 -18.76 16 16 O -0.94 -20.50 16.41 -57.17 -0.94 -21.44 16 17 C -0.48 -8.82 7.00 -17.23 -0.12 -8.94 16 18 C -0.14 -2.56 10.55 -40.01 -0.42 -2.98 16 19 C 0.03 0.44 12.03 -17.37 -0.21 0.24 16 20 N -0.27 -4.61 12.58 30.62 0.39 -4.22 16 21 N -0.32 -5.37 4.01 -67.26 -0.27 -5.64 16 22 C 0.09 1.14 10.54 59.85 0.63 1.77 16 23 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 24 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.66 5.84 -51.92 -0.30 0.36 16 29 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 30 H 0.16 2.75 8.06 -52.48 -0.42 2.33 16 31 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.23 4.73 -51.93 -0.25 0.98 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -30.77 295.53 -6.39 -37.16 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.04 Total: 1.36 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 0.22 Total: -16.46 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.39 Total: -52.43 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.79 Total: -40.20 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.60 Total: 50.94 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.77 -6.39 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129798901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.800 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds