Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 C 1.76207 * 107.21640 * 89.99855 * 14 12 2 18 18 C 1.35317 * 126.12608 * 269.69209 * 17 14 12 19 19 C 1.39868 * 107.91771 * 179.90647 * 18 17 14 20 20 N 1.30831 * 108.20235 * 0.36305 * 19 18 17 21 21 N 1.34936 * 126.12681 * 90.00142 * 17 14 12 22 22 C 1.46507 * 126.03919 * 359.94576 * 21 17 14 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 30 30 H 1.08004 * 126.04142 * 0.03027 * 18 17 14 31 31 H 1.08003 * 125.89289 * 180.14211 * 19 18 17 32 32 H 1.08995 * 109.46977 * 89.99747 * 22 21 17 33 33 H 1.09001 * 109.46703 * 209.99907 * 22 21 17 34 34 H 1.08997 * 109.46765 * 329.99755 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 6 4.6445 -0.1180 -1.7880 18 6 5.3464 0.6816 -0.9519 19 6 6.6305 0.1434 -0.8187 20 7 6.6996 -0.9360 -1.5547 21 7 5.4581 -1.1220 -2.1765 22 6 5.1054 -2.2138 -3.0874 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1615 3.4845 27 1 0.7377 -2.1443 -1.9995 28 1 2.4630 -2.5817 -1.9865 29 1 1.5296 -2.5968 -0.4710 30 1 4.9792 1.5761 -0.4707 31 1 7.4283 0.5508 -0.2154 32 1 5.3331 -1.9201 -4.1120 33 1 5.6799 -3.1032 -2.8281 34 1 4.0408 -2.4306 -2.9996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129798901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -7.356006 kcal Electronic energy + Delta-G solvation = -20247.072141 eV Core-core repulsion = 17115.661384 eV Total energy + Delta-G solvation = -3131.410757 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23407 -38.54185 -37.98215 -37.07668 -34.55876 -34.32090 -31.55662 -30.96370 -27.83217 -27.25105 -27.05646 -23.37605 -22.57838 -22.33669 -19.91121 -18.99935 -18.51890 -18.37830 -17.14538 -16.59970 -16.46279 -16.37919 -15.31386 -15.14820 -14.87962 -14.78204 -14.46762 -13.94117 -13.77724 -13.66579 -13.43545 -13.24955 -13.07329 -13.01541 -12.75337 -12.71078 -12.68106 -12.21038 -12.13605 -11.95254 -11.91133 -11.20756 -10.85640 -10.49848 -9.85478 -9.74116 -8.09958 -6.23934 -0.78075 0.16763 1.35538 1.42867 1.46848 1.54362 1.55721 1.98768 2.44970 2.58322 3.17978 3.19361 3.52705 3.97082 4.15784 4.26231 4.31636 4.42627 4.51079 4.73535 4.76742 4.79494 4.99404 5.02489 5.14362 5.23831 5.48086 5.60820 5.62169 5.66627 5.83068 6.08430 6.27311 6.33810 6.84000 7.45542 8.94727 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.008447 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.647557 B = 3314.120782 C = 3981.751693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.033 0.967 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.978 5.978 13 C 0.091 3.909 14 S 2.716 3.284 15 O -0.964 6.964 16 O -0.974 6.974 17 C -0.497 4.497 18 C -0.165 4.165 19 C 0.032 3.968 20 N -0.280 5.280 21 N -0.318 5.318 22 C 0.071 3.929 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -5.639 -7.603 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.051 0.949 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.819 5.819 13 C -0.053 4.053 14 S 2.801 3.199 15 O -0.954 6.954 16 O -0.963 6.963 17 C -0.706 4.706 18 C -0.198 4.198 19 C -0.152 4.152 20 N -0.105 5.105 21 N -0.103 5.103 22 C -0.068 4.068 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.181 0.819 31 H 0.245 0.755 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.504 -6.166 -8.699 12.489 hybrid contribution 0.228 0.370 1.789 1.841 sum 6.732 -5.796 -6.910 11.254 Atomic orbital electron populations 1.21940 0.97007 1.00453 1.00407 1.18555 0.92445 0.91688 0.80802 0.94931 1.21582 1.31532 1.13040 0.90808 0.91938 1.25568 0.95161 0.95573 1.01484 1.69999 1.37170 1.23677 1.24325 0.85594 0.78083 0.78615 0.79812 1.19490 1.20987 1.20633 1.57353 1.62339 1.23079 1.39135 1.21610 1.01114 0.79799 1.02821 1.01365 0.72222 0.73205 0.73075 1.93515 1.85922 1.75294 1.40662 1.93557 1.83440 1.32726 1.86622 1.33826 1.22240 1.00469 1.14061 1.21869 0.94758 1.02530 1.00609 1.24624 0.98316 0.93120 0.99098 1.77107 1.02116 1.19552 1.11742 1.48470 1.07123 1.19681 1.35048 1.22642 1.03779 0.87787 0.92576 0.93435 0.90983 0.95551 0.92604 0.91292 0.90564 0.90287 0.81921 0.75530 0.88135 0.86327 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 8.97 71.98 0.65 -5.61 16 2 C 0.27 12.64 2.62 44.25 0.12 12.76 16 3 H 0.03 1.73 6.91 -2.39 -0.02 1.72 16 4 C -0.53 -26.38 7.99 25.60 0.20 -26.18 16 5 H 0.06 3.05 7.33 -2.91 -0.02 3.03 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -49.19 11.32 21.45 0.24 -48.95 16 8 Si 0.95 41.05 29.54 68.60 2.03 43.08 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.98 -37.92 3.06 -520.42 -1.59 -39.51 16 13 C 0.09 2.83 9.28 127.77 1.19 4.01 16 14 S 2.72 102.04 5.59 -56.49 -0.32 101.72 16 15 O -0.96 -34.00 14.86 -128.00 -1.90 -35.91 16 16 O -0.97 -43.04 16.41 -128.00 -2.10 -45.14 16 17 C -0.50 -17.74 7.00 83.54 0.58 -17.15 16 18 C -0.17 -5.75 10.55 21.99 0.23 -5.52 16 19 C 0.03 0.95 12.03 85.24 1.02 1.98 16 20 N -0.28 -8.95 12.58 -57.03 -0.72 -9.67 16 21 N -0.32 -10.16 4.01 -366.70 -1.47 -11.63 16 22 C 0.07 1.66 10.54 127.77 1.35 3.01 16 23 H 0.05 1.96 7.67 -2.39 -0.02 1.95 16 24 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.90 5.84 -2.38 -0.01 1.88 16 29 H 0.08 2.55 7.02 -2.38 -0.02 2.53 16 30 H 0.16 5.54 8.06 -2.91 -0.02 5.51 16 31 H 0.23 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.10 2.26 4.73 -2.39 -0.01 2.25 16 Total: -1.00 -64.60 295.53 1.07 -63.53 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.11 Total: 13.58 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 5.79 Total: -31.10 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.54 Total: -109.76 kcal Atomic # 8 Polarization: -77.04 SS G_CDS: -4.00 Total: -81.04 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 102.04 SS G_CDS: -0.32 Total: 101.72 kcal Total: -64.60 1.07 -63.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129798901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.174 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds