Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40085 * 126.02980 * 2 1 4 4 C 1.30835 * 108.20167 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.20541 * 359.78351 * 4 3 2 6 6 C 1.34943 * 126.04196 * 180.02562 * 2 1 3 7 7 S 1.76204 * 126.12502 * 359.94162 * 6 2 1 8 8 O 1.42105 * 106.39972 * 96.46140 * 7 6 2 9 9 O 1.42098 * 106.40426 * 323.54313 * 7 6 2 10 10 N 1.65595 * 107.21987 * 210.00025 * 7 6 2 11 11 C 1.46508 * 119.99876 * 65.00402 * 10 7 6 12 12 C 1.52991 * 109.47282 * 164.99994 * 11 10 7 13 13 C 1.52999 * 109.47330 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47241 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99882 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99460 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00134 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47316 * 60.00015 * 18 16 14 20 20 H 1.48507 * 109.47240 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47334 * 299.99647 * 18 16 14 22 22 H 1.08999 * 109.47395 * 269.97578 * 1 2 3 23 23 H 1.09000 * 109.47518 * 29.98087 * 1 2 3 24 24 H 1.09007 * 109.46724 * 149.98125 * 1 2 3 25 25 H 1.08001 * 125.90234 * 179.97438 * 4 3 2 26 26 H 1.07999 * 126.04512 * 180.23353 * 5 4 3 27 27 H 0.96997 * 120.00034 * 245.00430 * 10 7 6 28 28 H 1.09006 * 109.46715 * 285.00199 * 11 10 7 29 29 H 1.08993 * 109.46869 * 44.99478 * 11 10 7 30 30 H 1.09003 * 109.47593 * 300.00518 * 12 11 10 31 31 H 1.09006 * 109.47454 * 59.99767 * 12 11 10 32 32 H 1.09000 * 109.46984 * 299.99903 * 13 12 11 33 33 H 1.08991 * 109.46891 * 60.00054 * 13 12 11 34 34 H 0.97009 * 119.99447 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5438 -0.6664 0.0041 6 6 2.2590 -1.0911 -0.0005 7 16 1.7194 -2.7685 0.0002 8 8 1.7415 -3.1976 -1.3543 9 8 0.5535 -2.8147 0.8112 10 7 2.8739 -3.6546 0.7903 11 6 3.1258 -3.4248 2.2151 12 6 3.9403 -4.5887 2.7832 13 6 4.2039 -4.3485 4.2710 14 6 5.0067 -5.4947 4.8304 15 1 5.2992 -6.3128 4.1890 16 6 5.3668 -5.4994 6.1613 17 7 5.0101 -4.5033 6.9425 18 14 6.3612 -6.9204 6.8548 19 1 7.6552 -7.0180 6.1328 20 1 6.6162 -6.6878 8.2993 21 1 5.6025 -8.1854 6.6842 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5142 25 1 4.4053 1.3712 -0.0011 26 1 4.4212 -1.2961 0.0084 27 1 3.3834 -4.3256 0.3097 28 1 3.6828 -2.4962 2.3405 29 1 2.1761 -3.3532 2.7450 30 1 3.3834 -5.5173 2.6577 31 1 4.8901 -4.6604 2.2532 32 1 4.7610 -3.4201 4.3960 33 1 3.2543 -4.2767 4.8012 34 1 5.2638 -4.5064 7.8788 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129801423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -4.904220 kcal Electronic energy + Delta-G solvation = -18808.391170 eV Core-core repulsion = 15677.086730 eV Total energy + Delta-G solvation = -3131.304440 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40926 -37.41007 -36.16389 -36.11331 -33.63909 -33.26130 -30.99132 -30.68249 -27.07916 -26.47290 -23.09135 -22.49005 -21.60846 -20.62505 -19.38771 -18.12723 -17.44882 -16.62261 -16.04975 -15.69783 -15.60683 -14.70858 -14.63117 -14.46352 -14.27363 -14.06931 -13.08161 -12.87428 -12.68166 -12.39824 -12.32799 -12.25637 -12.09581 -11.75309 -11.63898 -11.08083 -10.93235 -10.81156 -10.60630 -10.02274 -9.99760 -9.52936 -9.40431 -9.16414 -9.02831 -8.39717 -6.04870 -4.07871 0.10778 1.07444 2.09940 2.40092 2.77636 3.30788 3.35737 3.37717 3.38349 4.19535 4.40234 4.43602 4.78451 4.88822 5.06133 5.16173 5.18293 5.24319 5.31288 5.45149 5.57884 5.80658 6.00371 6.26399 6.42996 6.49974 6.68453 6.86365 7.02226 7.19325 7.59006 7.71091 7.93441 8.34699 8.98503 9.56643 11.06353 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003948 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.606289 B = 7090.600147 C = 7480.677969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.312 5.312 3 N -0.260 5.260 4 C 0.033 3.967 5 C -0.161 4.161 6 C -0.486 4.486 7 S 2.712 3.288 8 O -0.952 6.952 9 O -0.947 6.947 10 N -1.101 6.101 11 C 0.110 3.890 12 C -0.115 4.115 13 C 0.021 3.979 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.195 0.805 26 H 0.164 0.836 27 H 0.422 0.578 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 8.084 -14.945 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.097 5.097 3 N -0.085 5.085 4 C -0.151 4.151 5 C -0.193 4.193 6 C -0.694 4.694 7 S 2.793 3.207 8 O -0.941 6.941 9 O -0.936 6.936 10 N -0.865 5.865 11 C -0.015 4.015 12 C -0.154 4.154 13 C -0.017 4.017 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.114 0.886 23 H 0.119 0.881 24 H 0.107 0.893 25 H 0.212 0.788 26 H 0.181 0.819 27 H 0.258 0.742 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.484 9.051 -15.030 19.074 hybrid contribution 1.914 -1.019 0.493 2.224 sum -5.570 8.032 -14.537 17.518 Atomic orbital electron populations 1.22246 0.72977 1.05007 1.05351 1.48183 1.06498 1.01762 1.53209 1.77254 1.02288 1.08603 1.20371 1.24118 0.95335 0.94981 1.00666 1.21605 0.95251 0.95795 1.06601 1.33762 1.00734 1.17161 1.17741 1.01724 0.73474 0.72176 0.73287 1.93638 1.86258 1.79855 1.34350 1.93625 1.44645 1.85789 1.69567 1.55345 1.59449 1.51353 1.20381 1.21719 1.01651 1.00976 0.77122 1.21860 0.98041 0.95458 1.00086 1.19077 0.97215 0.97422 0.87955 1.21164 1.34189 1.06195 0.94611 0.92616 1.25018 0.96143 0.96038 0.97182 1.69953 1.46247 1.31183 1.05968 0.86640 0.80592 0.82727 0.77919 1.20237 1.21296 1.20224 0.88628 0.88137 0.89298 0.78822 0.81857 0.74199 0.91719 0.90304 0.92233 0.92372 0.96249 0.96178 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.64 59.85 0.64 1.46 16 2 N -0.31 -4.06 4.01 -67.25 -0.27 -4.33 16 3 N -0.26 -3.47 12.58 30.63 0.39 -3.09 16 4 C 0.03 0.38 12.03 -17.36 -0.21 0.17 16 5 C -0.16 -1.87 10.67 -40.01 -0.43 -2.30 16 6 C -0.49 -6.28 6.87 -17.23 -0.12 -6.39 16 7 S 2.71 34.91 5.41 -107.50 -0.58 34.33 16 8 O -0.95 -13.92 18.02 -57.17 -1.03 -14.95 16 9 O -0.95 -14.12 16.15 -57.17 -0.92 -15.04 16 10 N -1.10 -13.39 5.93 -10.61 -0.06 -13.46 16 11 C 0.11 1.64 6.22 -4.04 -0.03 1.61 16 12 C -0.12 -2.08 5.29 -26.74 -0.14 -2.23 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 15 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.77 7.22 -51.93 -0.37 0.40 16 25 H 0.20 1.46 8.06 -52.49 -0.42 1.03 16 26 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.42 4.27 8.65 -34.47 -0.30 3.97 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.23 7.75 -51.93 -0.40 0.82 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -34.71 310.28 -7.35 -42.05 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.42 Total: -0.54 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -0.83 Total: -20.27 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.79 Total: -46.31 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.95 Total: -29.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 34.91 SS G_CDS: -0.58 Total: 34.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.71 -7.35 -42.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129801423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.149 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds