Wall clock time and date at job start Mon Mar 30 2020 01:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40085 * 126.02980 * 2 1 4 4 C 1.30835 * 108.20167 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.20541 * 359.78351 * 4 3 2 6 6 C 1.34943 * 126.04196 * 180.02562 * 2 1 3 7 7 S 1.76204 * 126.12502 * 359.94162 * 6 2 1 8 8 O 1.42105 * 106.39972 * 96.46140 * 7 6 2 9 9 O 1.42098 * 106.40426 * 323.54313 * 7 6 2 10 10 N 1.65595 * 107.21987 * 210.00025 * 7 6 2 11 11 C 1.46508 * 119.99876 * 65.00402 * 10 7 6 12 12 C 1.52991 * 109.47282 * 164.99994 * 11 10 7 13 13 C 1.52999 * 109.47330 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47241 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99882 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99460 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00134 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47316 * 60.00015 * 18 16 14 20 20 H 1.48507 * 109.47240 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47334 * 299.99647 * 18 16 14 22 22 H 1.08999 * 109.47395 * 269.97578 * 1 2 3 23 23 H 1.09000 * 109.47518 * 29.98087 * 1 2 3 24 24 H 1.09007 * 109.46724 * 149.98125 * 1 2 3 25 25 H 1.08001 * 125.90234 * 179.97438 * 4 3 2 26 26 H 1.07999 * 126.04512 * 180.23353 * 5 4 3 27 27 H 0.96997 * 120.00034 * 245.00430 * 10 7 6 28 28 H 1.09006 * 109.46715 * 285.00199 * 11 10 7 29 29 H 1.08993 * 109.46869 * 44.99478 * 11 10 7 30 30 H 1.09003 * 109.47593 * 300.00518 * 12 11 10 31 31 H 1.09006 * 109.47454 * 59.99767 * 12 11 10 32 32 H 1.09000 * 109.46984 * 299.99903 * 13 12 11 33 33 H 1.08991 * 109.46891 * 60.00054 * 13 12 11 34 34 H 0.97009 * 119.99447 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5438 -0.6664 0.0041 6 6 2.2590 -1.0911 -0.0005 7 16 1.7194 -2.7685 0.0002 8 8 1.7415 -3.1976 -1.3543 9 8 0.5535 -2.8147 0.8112 10 7 2.8739 -3.6546 0.7903 11 6 3.1258 -3.4248 2.2151 12 6 3.9403 -4.5887 2.7832 13 6 4.2039 -4.3485 4.2710 14 6 5.0067 -5.4947 4.8304 15 1 5.2992 -6.3128 4.1890 16 6 5.3668 -5.4994 6.1613 17 7 5.0101 -4.5033 6.9425 18 14 6.3612 -6.9204 6.8548 19 1 7.6552 -7.0180 6.1328 20 1 6.6162 -6.6878 8.2993 21 1 5.6025 -8.1854 6.6842 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8899 -0.5142 25 1 4.4053 1.3712 -0.0011 26 1 4.4212 -1.2961 0.0084 27 1 3.3834 -4.3256 0.3097 28 1 3.6828 -2.4962 2.3405 29 1 2.1761 -3.3532 2.7450 30 1 3.3834 -5.5173 2.6577 31 1 4.8901 -4.6604 2.2532 32 1 4.7610 -3.4201 4.3960 33 1 3.2543 -4.2767 4.8012 34 1 5.2638 -4.5064 7.8788 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129801423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:52 Heat of formation + Delta-G solvation = -31.618440 kcal Electronic energy + Delta-G solvation = -18809.549585 eV Core-core repulsion = 15677.086730 eV Total energy + Delta-G solvation = -3132.462855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29611 -38.52875 -37.46578 -37.23177 -35.20271 -34.40911 -32.66132 -31.63562 -28.21333 -27.87166 -24.79076 -23.45742 -22.49754 -22.16546 -20.45264 -19.06768 -18.60464 -18.42975 -17.26488 -16.68837 -16.57372 -16.45484 -16.03983 -15.72347 -15.14082 -14.88840 -14.28697 -14.08803 -13.87157 -13.77852 -13.64255 -13.39371 -13.34221 -13.21242 -12.76219 -12.73444 -12.50347 -12.32946 -12.01354 -11.65880 -11.36492 -11.14034 -10.95137 -10.57401 -10.49077 -9.90901 -8.15619 -6.25600 -0.93528 0.14408 1.26844 1.44805 1.46723 1.54040 1.54431 1.74641 2.37411 2.45262 3.18784 3.35059 3.45764 3.93178 4.06122 4.18300 4.25584 4.29573 4.35113 4.46662 4.52423 4.65533 4.71529 5.01518 5.21432 5.26921 5.45939 5.57179 5.58805 5.80255 5.91244 6.01858 6.29246 6.30955 6.92081 7.43663 8.95861 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003948 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.606289 B = 7090.600147 C = 7480.677969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.325 5.325 3 N -0.286 5.286 4 C 0.031 3.969 5 C -0.164 4.164 6 C -0.504 4.504 7 S 2.738 3.262 8 O -0.967 6.967 9 O -0.969 6.969 10 N -1.091 6.091 11 C 0.120 3.880 12 C -0.104 4.104 13 C 0.020 3.980 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.269 1.269 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.094 0.906 25 H 0.229 0.771 26 H 0.188 0.812 27 H 0.433 0.567 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.001 0.999 33 H -0.007 1.007 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 7.627 -15.891 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.110 5.110 3 N -0.111 5.111 4 C -0.153 4.153 5 C -0.196 4.196 6 C -0.713 4.713 7 S 2.820 3.180 8 O -0.957 6.957 9 O -0.959 6.959 10 N -0.856 5.856 11 C -0.006 4.006 12 C -0.143 4.143 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.194 1.194 22 H 0.117 0.883 23 H 0.140 0.860 24 H 0.113 0.887 25 H 0.245 0.755 26 H 0.205 0.795 27 H 0.272 0.728 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.012 0.988 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.519 8.564 -16.005 19.287 hybrid contribution 1.604 -0.827 0.766 1.961 sum -4.915 7.737 -15.239 17.783 Atomic orbital electron populations 1.22538 0.71902 1.06427 1.06074 1.48491 1.07419 1.01623 1.53438 1.77216 1.03273 1.09292 1.21274 1.24764 0.95751 0.95460 0.99325 1.22052 0.95569 0.96411 1.05543 1.33710 1.01607 1.16955 1.19042 1.00783 0.72812 0.71917 0.72441 1.93615 1.86455 1.80444 1.35141 1.93594 1.46033 1.86240 1.70004 1.55053 1.59511 1.51896 1.19179 1.21438 1.00850 1.00145 0.78160 1.21621 0.99531 0.96819 0.96315 1.19003 0.95187 0.95873 0.91764 1.21687 1.34042 1.07076 0.95077 0.91798 1.25930 0.97385 0.98668 0.97793 1.70089 1.47769 1.33297 1.06245 0.85562 0.79346 0.79462 0.77031 1.19047 1.21293 1.19395 0.88279 0.86003 0.88741 0.75525 0.79474 0.72817 0.90479 0.91226 0.91968 0.90739 0.98045 0.98821 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.64 127.77 1.36 2.67 16 2 N -0.32 -8.14 4.01 -366.69 -1.47 -9.61 16 3 N -0.29 -7.26 12.58 -57.02 -0.72 -7.97 16 4 C 0.03 0.64 12.03 85.24 1.03 1.66 16 5 C -0.16 -3.47 10.67 21.99 0.23 -3.24 16 6 C -0.50 -12.35 6.87 83.54 0.57 -11.78 16 7 S 2.74 67.21 5.41 -56.49 -0.31 66.90 16 8 O -0.97 -27.02 18.02 -128.00 -2.31 -29.32 16 9 O -0.97 -28.31 16.15 -128.00 -2.07 -30.37 16 10 N -1.09 -24.54 5.93 -187.49 -1.11 -25.65 16 11 C 0.12 3.40 6.22 86.37 0.54 3.94 16 12 C -0.10 -3.62 5.29 30.59 0.16 -3.46 16 13 C 0.02 0.96 4.97 29.85 0.15 1.11 16 14 C -0.54 -29.09 9.11 25.60 0.23 -28.85 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 18 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.60 7.22 -2.38 -0.02 1.59 16 25 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 26 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 27 H 0.43 7.75 8.65 -96.75 -0.84 6.91 16 28 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.07 2.13 7.75 -2.39 -0.02 2.11 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -73.61 310.28 -0.66 -74.27 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.27 Total: 9.40 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.74 Total: -37.48 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.02 Total: -98.25 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -4.37 Total: -59.70 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 67.21 SS G_CDS: -0.31 Total: 66.90 kcal Total: -73.61 -0.66 -74.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129801423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.656 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds