Wall clock time and date at job start Mon Mar 30 2020 00:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.47010 * 2 1 4 4 N 1.40090 * 126.03699 * 90.02416 * 3 2 1 5 5 C 1.30838 * 108.20347 * 180.02562 * 4 3 2 6 6 C 1.50702 * 125.89882 * 180.02562 * 5 4 3 7 7 C 1.39875 * 108.20512 * 359.97438 * 5 4 3 8 8 S 1.76199 * 126.04158 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40207 * 203.56471 * 8 7 5 10 10 O 1.42094 * 106.39983 * 336.48535 * 8 7 5 11 11 N 1.65598 * 107.21633 * 90.02799 * 8 7 5 12 12 C 1.36934 * 120.00561 * 64.99614 * 11 8 7 13 13 H 1.08000 * 119.99529 * 0.02562 * 12 11 8 14 14 C 1.38805 * 120.00441 * 179.97438 * 12 11 8 15 15 N 1.31626 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00168 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47191 * 90.00314 * 16 14 12 18 18 H 1.48500 * 109.47098 * 210.00341 * 16 14 12 19 19 H 1.48497 * 109.47166 * 330.00122 * 16 14 12 20 20 C 1.34951 * 126.03605 * 270.30985 * 3 2 1 21 21 C 1.50700 * 126.12519 * 359.97438 * 20 3 2 22 22 H 1.09004 * 109.46773 * 60.00000 * 1 2 3 23 23 H 1.08994 * 109.46958 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46707 * 300.00344 * 1 2 3 25 25 H 1.08991 * 109.46980 * 239.99700 * 2 1 3 26 26 H 1.08997 * 109.47064 * 119.99800 * 2 1 3 27 27 H 1.09000 * 109.46639 * 269.97388 * 6 5 4 28 28 H 1.09000 * 109.47131 * 29.97372 * 6 5 4 29 29 H 1.09002 * 109.46831 * 149.97364 * 6 5 4 30 30 H 0.97004 * 119.99509 * 244.99913 * 11 8 7 31 31 H 0.97001 * 119.99937 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46893 * 270.17807 * 21 20 3 33 33 H 1.08991 * 109.47642 * 30.17943 * 21 20 3 34 34 H 1.09000 * 109.46654 * 150.18374 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2936 2.1581 1.1328 5 6 2.7080 3.3326 0.7321 6 6 3.1137 4.4780 1.6236 7 6 2.7107 3.3413 -0.6666 8 16 3.1863 4.6914 -1.6940 9 8 2.5382 4.4929 -2.9430 10 8 3.0242 5.8669 -0.9124 11 7 4.8103 4.5407 -1.9809 12 6 5.2835 3.4714 -2.6935 13 1 4.5974 2.7265 -3.0688 14 6 6.6446 3.3454 -2.9344 15 7 7.4807 4.2536 -2.4773 16 14 7.2900 1.8871 -3.9071 17 1 7.3185 2.2293 -5.3518 18 1 8.6634 1.5557 -3.4497 19 1 6.4012 0.7169 -3.6930 20 6 2.2775 2.1317 -1.0913 21 6 2.1168 1.6989 -2.5258 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.2426 5.0966 1.8393 28 1 3.5209 4.0863 2.5557 29 1 3.8709 5.0793 1.1206 30 1 5.4264 5.2100 -1.6440 31 1 8.4319 4.1653 -2.6454 32 1 3.0461 1.2494 -2.8759 33 1 1.3107 0.9687 -2.5969 34 1 1.8775 2.5655 -3.1421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268288542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:20 Heat of formation + Delta-G solvation = -10.880730 kcal Electronic energy + Delta-G solvation = -19993.017066 eV Core-core repulsion = 16861.453465 eV Total energy + Delta-G solvation = -3131.563601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97034 -36.13887 -34.78525 -34.67059 -34.47089 -32.13402 -30.81452 -30.56383 -27.37904 -26.71927 -24.39860 -23.24550 -20.68047 -19.18622 -18.27048 -17.94999 -16.91230 -16.20231 -15.49403 -15.09754 -14.52590 -14.30558 -14.25053 -13.59381 -13.38392 -13.11140 -12.95834 -12.83179 -12.26227 -12.20294 -11.91267 -11.72465 -11.62933 -11.47298 -11.24470 -11.00398 -10.92276 -10.84648 -10.51479 -10.49086 -10.20698 -9.91937 -9.77099 -8.76090 -8.53827 -8.15309 -6.33091 -3.81261 1.71189 2.05011 2.69637 2.81754 3.20239 3.25235 3.26061 4.16501 4.50575 4.65632 4.78773 4.86402 4.90981 5.02197 5.11117 5.22719 5.26423 5.38125 5.48606 5.61238 5.74258 5.85562 5.91922 6.05748 6.22502 6.25428 6.40830 6.54221 6.97043 7.11832 7.27828 7.62084 7.95453 8.78128 8.94985 9.36016 10.84407 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.008308 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.231007 B = 3369.502687 C = 4092.697727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.371 5.371 4 N -0.311 5.311 5 C 0.158 3.842 6 C -0.082 4.082 7 C -0.800 4.800 8 S 2.674 3.326 9 O -0.979 6.979 10 O -0.998 6.998 11 N -0.961 5.961 12 C -0.285 4.285 13 H 0.099 0.901 14 C 0.030 3.970 15 N -0.890 5.890 16 Si 0.916 3.084 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.205 3.795 21 C -0.133 4.133 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.410 0.590 31 H 0.270 0.730 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 -7.587 3.314 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.151 5.151 4 N -0.131 5.131 5 C -0.010 4.010 6 C -0.141 4.141 7 C -0.893 4.893 8 S 2.762 3.238 9 O -0.969 6.969 10 O -0.988 6.988 11 N -0.715 5.715 12 C -0.421 4.421 13 H 0.116 0.884 14 C -0.175 4.175 15 N -0.532 5.532 16 Si 0.744 3.256 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.073 3.927 21 C -0.191 4.191 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.905 -7.968 4.043 13.340 hybrid contribution 1.030 -0.900 -0.437 1.436 sum -8.875 -8.868 3.605 13.054 Atomic orbital electron populations 1.22198 0.94422 1.02861 1.03342 1.21669 0.95131 0.78524 1.04455 1.48968 1.50799 1.11632 1.03674 1.77199 1.24649 1.04110 1.07192 1.21775 0.93941 0.93614 0.91718 1.20397 1.02907 0.93103 0.97656 1.32040 1.29377 1.19402 1.08513 1.03334 0.73676 0.73369 0.73454 1.93387 1.75342 1.86642 1.41555 1.93415 1.86532 1.47330 1.71501 1.51417 1.24601 1.33104 1.62332 1.19130 0.92642 1.03054 1.27284 0.88354 1.25112 0.95817 0.98081 0.98526 1.69684 1.03568 1.34263 1.45694 0.86097 0.78396 0.81211 0.79921 1.20210 1.20929 1.19746 1.20878 0.91464 0.89400 0.90911 1.21190 1.03458 1.05390 0.89061 0.91879 0.90586 0.91647 0.88840 0.88743 0.89853 0.91026 0.89015 0.75421 0.91967 0.88707 0.91112 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.12 1.46 6.78 -4.04 -0.03 1.43 16 3 N -0.37 -6.33 3.61 -57.14 -0.21 -6.53 16 4 N -0.31 -5.96 12.58 33.67 0.42 -5.54 16 5 C 0.16 3.15 7.21 -82.40 -0.59 2.56 16 6 C -0.08 -1.41 9.53 36.01 0.34 -1.06 16 7 C -0.80 -16.55 6.09 -40.01 -0.24 -16.80 16 8 S 2.67 59.56 5.67 -107.50 -0.61 58.95 16 9 O -0.98 -22.81 14.95 -57.17 -0.85 -23.66 16 10 O -1.00 -23.08 15.90 -57.17 -0.91 -23.99 16 11 N -0.96 -23.34 5.75 31.49 0.18 -23.15 16 12 C -0.28 -7.21 9.63 -15.06 -0.15 -7.35 16 13 H 0.10 2.32 6.55 -52.49 -0.34 1.98 16 14 C 0.03 0.77 5.50 -17.43 -0.10 0.68 16 15 N -0.89 -24.07 13.06 55.49 0.72 -23.35 16 16 Si 0.92 19.85 29.55 -169.99 -5.02 14.82 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C 0.21 3.80 6.92 -82.26 -0.57 3.23 16 21 C -0.13 -2.08 9.13 36.01 0.33 -1.75 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.65 6.88 -51.93 -0.36 1.29 16 30 H 0.41 10.16 8.02 -34.47 -0.28 9.89 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 32 H 0.09 1.44 7.35 -51.93 -0.38 1.06 16 33 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 34 H 0.13 2.20 5.54 -51.93 -0.29 1.91 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -31.93 300.34 -6.49 -38.42 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.12 Total: 9.87 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.62 Total: -20.35 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 1.12 Total: -58.58 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.76 Total: -47.65 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 59.56 SS G_CDS: -0.61 Total: 58.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.93 -6.49 -38.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268288542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.538 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds