Wall clock time and date at job start Mon Mar 30 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.47010 * 2 1 4 4 N 1.40090 * 126.03699 * 90.02416 * 3 2 1 5 5 C 1.30838 * 108.20347 * 180.02562 * 4 3 2 6 6 C 1.50702 * 125.89882 * 180.02562 * 5 4 3 7 7 C 1.39875 * 108.20512 * 359.97438 * 5 4 3 8 8 S 1.76199 * 126.04158 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40207 * 203.56471 * 8 7 5 10 10 O 1.42094 * 106.39983 * 336.48535 * 8 7 5 11 11 N 1.65598 * 107.21633 * 90.02799 * 8 7 5 12 12 C 1.36934 * 120.00561 * 64.99614 * 11 8 7 13 13 H 1.08000 * 119.99529 * 0.02562 * 12 11 8 14 14 C 1.38805 * 120.00441 * 179.97438 * 12 11 8 15 15 N 1.31626 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00168 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47191 * 90.00314 * 16 14 12 18 18 H 1.48500 * 109.47098 * 210.00341 * 16 14 12 19 19 H 1.48497 * 109.47166 * 330.00122 * 16 14 12 20 20 C 1.34951 * 126.03605 * 270.30985 * 3 2 1 21 21 C 1.50700 * 126.12519 * 359.97438 * 20 3 2 22 22 H 1.09004 * 109.46773 * 60.00000 * 1 2 3 23 23 H 1.08994 * 109.46958 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46707 * 300.00344 * 1 2 3 25 25 H 1.08991 * 109.46980 * 239.99700 * 2 1 3 26 26 H 1.08997 * 109.47064 * 119.99800 * 2 1 3 27 27 H 1.09000 * 109.46639 * 269.97388 * 6 5 4 28 28 H 1.09000 * 109.47131 * 29.97372 * 6 5 4 29 29 H 1.09002 * 109.46831 * 149.97364 * 6 5 4 30 30 H 0.97004 * 119.99509 * 244.99913 * 11 8 7 31 31 H 0.97001 * 119.99937 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46893 * 270.17807 * 21 20 3 33 33 H 1.08991 * 109.47642 * 30.17943 * 21 20 3 34 34 H 1.09000 * 109.46654 * 150.18374 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2936 2.1581 1.1328 5 6 2.7080 3.3326 0.7321 6 6 3.1137 4.4780 1.6236 7 6 2.7107 3.3413 -0.6666 8 16 3.1863 4.6914 -1.6940 9 8 2.5382 4.4929 -2.9430 10 8 3.0242 5.8669 -0.9124 11 7 4.8103 4.5407 -1.9809 12 6 5.2835 3.4714 -2.6935 13 1 4.5974 2.7265 -3.0688 14 6 6.6446 3.3454 -2.9344 15 7 7.4807 4.2536 -2.4773 16 14 7.2900 1.8871 -3.9071 17 1 7.3185 2.2293 -5.3518 18 1 8.6634 1.5557 -3.4497 19 1 6.4012 0.7169 -3.6930 20 6 2.2775 2.1317 -1.0913 21 6 2.1168 1.6989 -2.5258 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.2426 5.0966 1.8393 28 1 3.5209 4.0863 2.5557 29 1 3.8709 5.0793 1.1206 30 1 5.4264 5.2100 -1.6440 31 1 8.4319 4.1653 -2.6454 32 1 3.0461 1.2494 -2.8759 33 1 1.3107 0.9687 -2.5969 34 1 1.8775 2.5655 -3.1421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268288542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:19 Heat of formation + Delta-G solvation = -34.532374 kcal Electronic energy + Delta-G solvation = -19994.042678 eV Core-core repulsion = 16861.453465 eV Total energy + Delta-G solvation = -3132.589213 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.38833 -37.99538 -36.56716 -36.33552 -35.93881 -33.44835 -32.69830 -31.81407 -28.66609 -28.06501 -26.31394 -24.31879 -22.14718 -20.55310 -20.06600 -19.78851 -18.53342 -17.83744 -16.91945 -16.45631 -16.34422 -16.02627 -15.39941 -15.16843 -14.89132 -14.33847 -14.26293 -13.96282 -13.73015 -13.56030 -13.16018 -13.10161 -13.01789 -12.87125 -12.81618 -12.79097 -12.69150 -12.25730 -12.23624 -12.01187 -11.93611 -11.75664 -11.40780 -10.14896 -10.12823 -9.97047 -8.20991 -5.78638 -0.05014 0.61212 1.26290 1.46698 1.49143 1.52686 1.59439 2.40302 2.85145 3.07711 3.33539 3.35403 3.48408 3.80235 3.92436 4.02063 4.09883 4.30343 4.39893 4.62413 4.66498 4.70669 4.72798 4.78502 4.94635 5.03323 5.15615 5.17801 5.25880 5.51545 5.72468 5.98803 6.49858 6.84874 7.09946 7.44291 8.98480 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.008308 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.231007 B = 3369.502687 C = 4092.697727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.362 5.362 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.087 4.087 7 C -0.830 4.830 8 S 2.713 3.287 9 O -0.992 6.992 10 O -1.008 7.008 11 N -0.984 5.984 12 C -0.306 4.306 13 H 0.111 0.889 14 C -0.024 4.024 15 N -0.938 5.938 16 Si 0.975 3.025 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.253 1.253 20 C 0.208 3.792 21 C -0.136 4.136 22 H 0.060 0.940 23 H 0.110 0.890 24 H 0.048 0.952 25 H 0.122 0.878 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.403 0.597 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -10.168 3.301 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.141 5.141 4 N -0.143 5.143 5 C -0.025 4.025 6 C -0.145 4.145 7 C -0.929 4.929 8 S 2.803 3.197 9 O -0.983 6.983 10 O -0.998 6.998 11 N -0.737 5.737 12 C -0.439 4.439 13 H 0.129 0.871 14 C -0.224 4.224 15 N -0.581 5.581 16 Si 0.799 3.201 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.176 1.176 20 C 0.074 3.926 21 C -0.194 4.194 22 H 0.079 0.921 23 H 0.129 0.871 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.238 0.762 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.590 -10.573 3.993 16.188 hybrid contribution 1.280 -0.132 -0.326 1.328 sum -10.309 -10.705 3.667 15.308 Atomic orbital electron populations 1.22174 0.92649 1.04876 1.02431 1.22262 0.96597 0.75858 1.06477 1.49384 1.49206 1.12914 1.02556 1.77142 1.24757 1.03943 1.08424 1.22129 0.94159 0.94525 0.91648 1.20501 1.03190 0.92676 0.98139 1.31523 1.32662 1.19906 1.08779 1.01124 0.72573 0.72981 0.73036 1.93383 1.75365 1.86934 1.42585 1.93412 1.86527 1.47916 1.71935 1.51267 1.24318 1.33501 1.64615 1.19473 0.93131 1.02737 1.28510 0.87141 1.25931 0.96112 1.00682 0.99689 1.69810 1.03520 1.36509 1.48288 0.85194 0.77718 0.78824 0.78361 1.20040 1.21420 1.17621 1.21260 0.90013 0.88864 0.92504 1.21308 1.05496 1.05876 0.86679 0.92052 0.87099 0.93277 0.86011 0.87654 0.88490 0.88874 0.90411 0.76228 0.92372 0.87981 0.86653 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.24 71.99 0.74 -1.81 16 2 C 0.11 2.09 6.78 86.38 0.59 2.68 16 3 N -0.36 -11.32 3.61 -334.69 -1.21 -12.53 16 4 N -0.32 -11.75 12.58 -47.38 -0.60 -12.35 16 5 C 0.14 5.59 7.21 43.10 0.31 5.90 16 6 C -0.09 -2.92 9.53 71.24 0.68 -2.24 16 7 C -0.83 -33.61 6.09 21.99 0.13 -33.48 16 8 S 2.71 121.11 5.67 -56.49 -0.32 120.79 16 9 O -0.99 -45.92 14.95 -128.00 -1.91 -47.83 16 10 O -1.01 -46.90 15.90 -128.00 -2.04 -48.94 16 11 N -0.98 -48.85 5.75 -54.27 -0.31 -49.16 16 12 C -0.31 -15.60 9.63 84.03 0.81 -14.79 16 13 H 0.11 5.16 6.55 -2.91 -0.02 5.14 16 14 C -0.02 -1.27 5.50 84.86 0.47 -0.80 16 15 N -0.94 -52.43 13.06 21.65 0.28 -52.15 16 16 Si 0.97 40.61 29.55 68.60 2.03 42.63 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 20 C 0.21 7.24 6.92 41.41 0.29 7.53 16 21 C -0.14 -3.83 9.13 71.24 0.65 -3.18 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.12 1.73 7.68 -2.39 -0.02 1.72 16 26 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.08 2.82 6.88 -2.39 -0.02 2.80 16 30 H 0.40 20.86 8.02 -96.74 -0.78 20.08 16 31 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.10 2.78 7.35 -2.39 -0.02 2.76 16 33 H 0.11 2.17 7.74 -2.39 -0.02 2.16 16 34 H 0.11 3.57 5.54 -2.39 -0.01 3.56 16 Total: -1.00 -69.44 300.34 0.94 -68.50 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.35 Total: 31.22 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.66 Total: -40.19 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -1.83 Total: -126.19 kcal Atomic # 8 Polarization: -92.82 SS G_CDS: -3.95 Total: -96.77 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 121.11 SS G_CDS: -0.32 Total: 120.79 kcal Total: -69.44 0.94 -68.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268288542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.967 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds