Wall clock time and date at job start Mon Mar 30 2020 01:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47588 * 2 1 4 4 C 1.34945 * 126.03739 * 125.26167 * 3 2 1 5 5 C 1.35322 * 107.74397 * 180.15103 * 4 3 2 6 6 S 1.76199 * 126.03787 * 179.87355 * 5 4 3 7 7 O 1.42095 * 106.40227 * 156.17082 * 6 5 4 8 8 O 1.42107 * 106.40094 * 23.25498 * 6 5 4 9 9 N 1.65593 * 107.21807 * 269.71336 * 6 5 4 10 10 C 1.46506 * 120.00245 * 65.00204 * 9 6 5 11 11 C 1.52997 * 109.47289 * 165.00019 * 10 9 6 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00542 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99408 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99995 * 16 14 12 18 18 H 1.48503 * 109.47086 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47288 * 300.00002 * 16 14 12 20 20 C 1.39871 * 107.91799 * 359.60661 * 5 4 3 21 21 N 1.30834 * 108.20464 * 0.24977 * 20 5 4 22 22 H 1.09000 * 109.47240 * 59.99629 * 1 2 3 23 23 H 1.08996 * 109.47577 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46467 * 299.99916 * 1 2 3 25 25 H 1.09003 * 109.46467 * 240.00084 * 2 1 3 26 26 H 1.09000 * 109.47240 * 120.00371 * 2 1 3 27 27 H 1.07999 * 126.12655 * 359.97438 * 4 3 2 28 28 H 0.97000 * 120.00411 * 244.99876 * 9 6 5 29 29 H 1.09001 * 109.47060 * 285.00288 * 10 9 6 30 30 H 1.09004 * 109.47073 * 44.99777 * 10 9 6 31 31 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 32 32 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 33 33 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 34 34 H 1.07996 * 125.89293 * 180.21514 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8771 1.9196 0.8910 5 6 3.0716 3.2136 0.5461 6 16 4.1045 4.3666 1.3877 7 8 4.4543 5.3615 0.4354 8 8 5.0663 3.5992 2.0988 9 7 3.1704 5.1195 2.5290 10 6 2.6158 4.3501 3.6456 11 6 2.1251 5.3091 4.7320 12 6 1.5553 4.5177 5.8808 13 1 1.5439 3.4385 5.8400 14 6 1.0485 5.1711 6.9840 15 7 1.0619 6.4852 7.0335 16 14 0.3415 4.1900 8.4078 17 1 1.3925 3.3028 8.9677 18 1 -0.1347 5.1209 9.4623 19 1 -0.7958 3.3663 7.9249 20 6 2.3127 3.4723 -0.5999 21 7 1.6809 2.3747 -0.9281 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8901 25 1 1.8932 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.3260 1.4099 1.7307 28 1 2.9903 6.0700 2.4584 29 1 1.7814 3.7451 3.2910 30 1 3.3874 3.6992 4.0570 31 1 2.9596 5.9141 5.0866 32 1 1.3536 5.9599 4.3206 33 1 0.7050 6.9450 7.8095 34 1 2.2574 4.4154 -1.1231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273509955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:14 Heat of formation + Delta-G solvation = -11.410093 kcal Electronic energy + Delta-G solvation = -18834.656311 eV Core-core repulsion = 15703.069756 eV Total energy + Delta-G solvation = -3131.586555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38432 -36.84388 -35.48627 -35.32531 -34.77698 -32.72777 -30.76708 -29.73263 -29.09857 -24.47463 -24.27981 -22.05455 -21.22780 -20.88985 -19.06169 -17.94081 -17.12038 -16.26018 -15.96273 -15.75634 -15.45047 -14.62676 -14.52873 -14.20533 -13.96971 -13.70934 -13.14397 -12.96685 -12.51571 -12.44517 -11.98066 -11.79246 -11.74086 -11.66040 -11.45500 -11.28722 -11.10585 -10.65684 -10.63644 -10.43321 -9.72787 -9.58384 -9.34478 -9.24787 -8.86816 -8.41251 -6.08714 -4.12298 0.83047 1.49232 2.20399 2.27172 3.28557 3.33657 3.34992 3.56763 4.08358 4.15407 4.39640 4.44786 4.58840 4.69048 4.79830 4.93708 5.22142 5.27939 5.30752 5.50134 5.51632 5.79071 5.82981 6.20799 6.29373 6.50823 6.63790 6.74495 7.31892 7.48572 7.56371 7.66543 7.90129 8.27692 8.93282 9.52090 11.02698 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.005269 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.181620 B = 5313.033364 C = 6528.233111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.362 5.362 4 C 0.178 3.822 5 C -0.812 4.812 6 S 2.725 3.275 7 O -0.974 6.974 8 O -0.969 6.969 9 N -1.112 6.112 10 C 0.121 3.879 11 C 0.017 3.983 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.133 3.867 21 N -0.295 5.295 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.192 0.808 28 H 0.416 0.584 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -11.101 -13.677 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.140 5.140 4 C 0.025 3.975 5 C -0.910 4.910 6 S 2.812 3.188 7 O -0.964 6.964 8 O -0.958 6.958 9 N -0.874 5.874 10 C -0.004 4.004 11 C -0.021 4.021 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.056 4.056 21 N -0.114 5.114 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.209 0.791 28 H 0.251 0.749 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.742 -11.777 -14.582 18.759 hybrid contribution -0.695 -0.096 1.274 1.455 sum 0.047 -11.873 -13.308 17.834 Atomic orbital electron populations 1.22062 0.93193 1.03165 1.04029 1.21890 0.96709 0.77000 1.04334 1.49294 1.33477 1.10676 1.20556 1.22556 0.89111 0.92522 0.93304 1.31787 1.30376 1.12205 1.16597 1.00789 0.72924 0.72765 0.72330 1.93534 1.82299 1.58314 1.62229 1.93553 1.57050 1.72574 1.72663 1.55499 1.72140 1.20439 1.39287 1.21582 0.96814 0.95384 0.86623 1.19279 0.96824 0.94404 0.91631 1.21041 1.40336 0.93098 1.01921 0.92429 1.24996 0.95866 0.94902 0.98473 1.69946 1.45921 1.07071 1.30118 0.86608 0.79424 0.79788 0.81872 1.20099 1.21231 1.20281 1.23521 0.91447 0.97678 0.92960 1.77340 1.23606 0.97057 1.13430 0.91002 0.90414 0.91550 0.89310 0.87988 0.79065 0.74928 0.93350 0.91442 0.95514 0.95804 0.92760 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.10 37.16 0.38 -0.87 16 2 C 0.12 0.92 7.23 -4.04 -0.03 0.89 16 3 N -0.36 -4.24 3.68 -61.36 -0.23 -4.46 16 4 C 0.18 2.18 11.19 -17.22 -0.19 1.99 16 5 C -0.81 -11.25 6.14 -40.01 -0.25 -11.49 16 6 S 2.73 42.35 5.88 -107.50 -0.63 41.72 16 7 O -0.97 -16.76 17.87 -57.17 -1.02 -17.78 16 8 O -0.97 -17.39 17.31 -57.17 -0.99 -18.38 16 9 N -1.11 -18.26 6.00 -10.61 -0.06 -18.32 16 10 C 0.12 2.32 6.16 -4.04 -0.02 2.29 16 11 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 12 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 13 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 16 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.13 1.79 11.81 -17.37 -0.21 1.59 16 21 N -0.30 -4.03 12.42 30.62 0.38 -3.65 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.42 6.38 8.65 -34.47 -0.30 6.08 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -34.77 313.26 -7.46 -42.23 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.47 Total: 1.40 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.88 Total: -18.17 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.83 Total: -51.57 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -2.01 Total: -36.16 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 42.35 SS G_CDS: -0.63 Total: 41.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.77 -7.46 -42.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273509955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.822 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds