Wall clock time and date at job start Mon Mar 30 2020 01:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47588 * 2 1 4 4 C 1.34945 * 126.03739 * 125.26167 * 3 2 1 5 5 C 1.35322 * 107.74397 * 180.15103 * 4 3 2 6 6 S 1.76199 * 126.03787 * 179.87355 * 5 4 3 7 7 O 1.42095 * 106.40227 * 156.17082 * 6 5 4 8 8 O 1.42107 * 106.40094 * 23.25498 * 6 5 4 9 9 N 1.65593 * 107.21807 * 269.71336 * 6 5 4 10 10 C 1.46506 * 120.00245 * 65.00204 * 9 6 5 11 11 C 1.52997 * 109.47289 * 165.00019 * 10 9 6 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00542 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99408 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99995 * 16 14 12 18 18 H 1.48503 * 109.47086 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47288 * 300.00002 * 16 14 12 20 20 C 1.39871 * 107.91799 * 359.60661 * 5 4 3 21 21 N 1.30834 * 108.20464 * 0.24977 * 20 5 4 22 22 H 1.09000 * 109.47240 * 59.99629 * 1 2 3 23 23 H 1.08996 * 109.47577 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46467 * 299.99916 * 1 2 3 25 25 H 1.09003 * 109.46467 * 240.00084 * 2 1 3 26 26 H 1.09000 * 109.47240 * 120.00371 * 2 1 3 27 27 H 1.07999 * 126.12655 * 359.97438 * 4 3 2 28 28 H 0.97000 * 120.00411 * 244.99876 * 9 6 5 29 29 H 1.09001 * 109.47060 * 285.00288 * 10 9 6 30 30 H 1.09004 * 109.47073 * 44.99777 * 10 9 6 31 31 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 32 32 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 33 33 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 34 34 H 1.07996 * 125.89293 * 180.21514 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8771 1.9196 0.8910 5 6 3.0716 3.2136 0.5461 6 16 4.1045 4.3666 1.3877 7 8 4.4543 5.3615 0.4354 8 8 5.0663 3.5992 2.0988 9 7 3.1704 5.1195 2.5290 10 6 2.6158 4.3501 3.6456 11 6 2.1251 5.3091 4.7320 12 6 1.5553 4.5177 5.8808 13 1 1.5439 3.4385 5.8400 14 6 1.0485 5.1711 6.9840 15 7 1.0619 6.4852 7.0335 16 14 0.3415 4.1900 8.4078 17 1 1.3925 3.3028 8.9677 18 1 -0.1347 5.1209 9.4623 19 1 -0.7958 3.3663 7.9249 20 6 2.3127 3.4723 -0.5999 21 7 1.6809 2.3747 -0.9281 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8901 25 1 1.8932 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.3260 1.4099 1.7307 28 1 2.9903 6.0700 2.4584 29 1 1.7814 3.7451 3.2910 30 1 3.3874 3.6992 4.0570 31 1 2.9596 5.9141 5.0866 32 1 1.3536 5.9599 4.3206 33 1 0.7050 6.9450 7.8095 34 1 2.2574 4.4154 -1.1231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273509955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:14 Heat of formation + Delta-G solvation = -38.017601 kcal Electronic energy + Delta-G solvation = -18835.810099 eV Core-core repulsion = 15703.069756 eV Total energy + Delta-G solvation = -3132.740344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32501 -38.18904 -36.93109 -36.82077 -35.50672 -34.67329 -31.70476 -30.93504 -30.58053 -26.36050 -25.01245 -23.11866 -22.87654 -21.84140 -20.30219 -19.03494 -18.54234 -18.07631 -16.97304 -16.89378 -16.55414 -16.40777 -15.53996 -15.44517 -15.36182 -14.85782 -14.36728 -14.08271 -13.66540 -13.28770 -13.23501 -13.17206 -13.06495 -13.02001 -12.91989 -12.85668 -12.42028 -12.33500 -12.18210 -11.66120 -11.44739 -11.28836 -10.66871 -10.57929 -10.30395 -10.19639 -8.17257 -6.27856 -0.41830 0.54350 1.22258 1.42488 1.45456 1.47800 1.55336 2.29173 2.46983 2.91048 3.17854 3.19950 3.65235 3.78004 4.00670 4.04475 4.30248 4.31553 4.39386 4.46617 4.61882 4.75370 4.85338 4.92751 5.05896 5.18072 5.34222 5.54342 5.69301 5.81871 5.85696 6.10924 6.28485 6.35711 6.88357 7.41345 8.94708 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.005269 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.181620 B = 5313.033364 C = 6528.233111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.358 5.358 4 C 0.179 3.821 5 C -0.826 4.826 6 S 2.749 3.251 7 O -0.991 6.991 8 O -0.992 6.992 9 N -1.114 6.114 10 C 0.136 3.864 11 C 0.018 3.982 12 C -0.542 4.542 13 H 0.070 0.930 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.124 3.876 21 N -0.316 5.316 22 H 0.053 0.947 23 H 0.105 0.895 24 H 0.050 0.950 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.220 0.780 28 H 0.420 0.580 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.000 1.000 32 H 0.005 0.995 33 H 0.263 0.737 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -13.531 -13.688 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.135 5.135 4 C 0.024 3.976 5 C -0.927 4.927 6 S 2.839 3.161 7 O -0.982 6.982 8 O -0.982 6.982 9 N -0.875 5.875 10 C 0.010 3.990 11 C -0.021 4.021 12 C -0.581 4.581 13 H 0.088 0.912 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.065 4.065 21 N -0.135 5.135 22 H 0.072 0.928 23 H 0.123 0.877 24 H 0.069 0.931 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.237 0.763 28 H 0.255 0.745 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.343 -14.208 -14.600 20.375 hybrid contribution -0.582 0.607 1.200 1.465 sum -0.239 -13.601 -13.400 19.095 Atomic orbital electron populations 1.22036 0.93249 1.04426 1.02320 1.22362 0.96693 0.75186 1.06729 1.49650 1.32678 1.11611 1.19589 1.23035 0.88634 0.92136 0.93754 1.31428 1.31411 1.12659 1.17242 0.99805 0.72420 0.72278 0.71575 1.93506 1.82781 1.59444 1.62427 1.93516 1.58403 1.72927 1.73360 1.55400 1.72091 1.20784 1.39189 1.21253 0.97488 0.94291 0.85947 1.19169 0.95313 0.94772 0.92830 1.21558 1.39838 0.94030 1.02642 0.91153 1.25933 0.96362 0.95862 1.01493 1.70088 1.47210 1.08883 1.31019 0.85513 0.79025 0.78319 0.78260 1.19086 1.21354 1.19038 1.23856 0.91234 0.98418 0.93005 1.77299 1.24097 0.97599 1.14503 0.92776 0.87691 0.93092 0.87693 0.84871 0.76316 0.74539 0.91661 0.91033 0.98114 0.97657 0.92822 0.77263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.10 71.98 0.73 -1.34 16 2 C 0.11 1.31 7.23 86.38 0.62 1.94 16 3 N -0.36 -7.54 3.68 -348.06 -1.28 -8.82 16 4 C 0.18 3.95 11.19 83.54 0.93 4.89 16 5 C -0.83 -21.70 6.14 21.99 0.14 -21.56 16 6 S 2.75 83.31 5.88 -56.49 -0.33 82.97 16 7 O -0.99 -33.70 17.87 -128.00 -2.29 -35.99 16 8 O -0.99 -34.60 17.31 -128.00 -2.22 -36.81 16 9 N -1.11 -36.17 6.00 -187.48 -1.12 -37.30 16 10 C 0.14 5.09 6.16 86.38 0.53 5.62 16 11 C 0.02 0.88 5.11 29.85 0.15 1.03 16 12 C -0.54 -28.85 9.11 25.60 0.23 -28.62 16 13 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 0.09 5.46 84.65 0.46 0.56 16 15 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 16 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 C 0.12 3.20 11.81 85.24 1.01 4.20 16 21 N -0.32 -8.18 12.42 -57.03 -0.71 -8.89 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.13 0.79 8.07 -2.39 -0.02 0.77 16 27 H 0.22 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.42 12.99 8.65 -96.75 -0.84 12.15 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.63 7.75 -2.38 -0.02 2.61 16 31 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 32 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.21 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -74.04 313.26 -0.56 -74.60 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.27 Total: 13.80 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 4.81 Total: -33.28 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -2.83 Total: -109.56 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -4.50 Total: -72.80 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 83.31 SS G_CDS: -0.33 Total: 82.97 kcal Total: -74.04 -0.56 -74.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273509955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.579 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds