Wall clock time and date at job start Mon Mar 30 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39985 * 119.99958 * 2 1 4 4 C 1.40420 * 125.97719 * 359.71731 * 3 2 1 5 5 C 1.35256 * 107.86615 * 179.82542 * 4 3 2 6 6 N 1.34958 * 107.85839 * 0.43132 * 5 4 3 7 7 C 1.46503 * 125.97066 * 179.72412 * 6 5 4 8 8 N 1.31228 * 125.97721 * 180.02562 * 3 2 1 9 9 S 1.65599 * 120.00159 * 180.02562 * 2 1 3 10 10 O 1.42105 * 104.27797 * 26.07081 * 9 2 1 11 11 O 1.42101 * 104.27901 * 153.92789 * 9 2 1 12 12 C 1.81397 * 104.44825 * 269.99969 * 9 2 1 13 13 C 1.53009 * 109.47235 * 179.97438 * 12 9 2 14 14 C 1.50697 * 109.46948 * 179.97438 * 13 12 9 15 15 H 1.07997 * 120.00322 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00266 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46941 * 59.99879 * 18 16 14 20 20 H 1.48495 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46812 * 300.00133 * 18 16 14 22 22 H 1.08995 * 109.47121 * 269.99717 * 1 2 3 23 23 H 1.09004 * 109.47485 * 30.00087 * 1 2 3 24 24 H 1.09004 * 109.46938 * 149.99650 * 1 2 3 25 25 H 1.08002 * 126.06665 * 359.96278 * 4 3 2 26 26 H 1.07998 * 126.07247 * 180.13686 * 5 4 3 27 27 H 1.08993 * 109.47228 * 269.97510 * 7 6 5 28 28 H 1.09001 * 109.46894 * 29.97844 * 7 6 5 29 29 H 1.09005 * 109.46812 * 149.97415 * 7 6 5 30 30 H 1.09004 * 109.47032 * 299.99803 * 12 9 2 31 31 H 1.09000 * 109.47124 * 60.00075 * 12 9 2 32 32 H 1.08995 * 109.47216 * 300.00010 * 13 12 9 33 33 H 1.09000 * 109.46805 * 60.00123 * 13 12 9 34 34 H 0.97001 * 119.99986 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1649 1.2123 0.0000 4 6 1.5932 2.4949 -0.0056 5 6 2.6001 3.3980 0.0004 6 7 3.7659 2.7181 -0.0002 7 6 5.1066 3.3088 -0.0006 8 7 3.4700 1.3490 -0.0005 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3559 -0.6063 11 8 3.5395 -1.1188 -0.6057 12 6 2.5193 -1.8268 1.7558 13 6 3.2809 -3.1472 1.8892 14 6 3.4694 -3.4731 3.3484 15 1 3.0842 -2.8056 4.1049 16 6 4.1328 -4.6241 3.7176 17 7 4.6014 -5.4372 2.7963 18 14 4.3659 -5.0285 5.5263 19 1 3.0387 -5.1538 6.1805 20 1 5.1051 -6.3098 5.6557 21 1 5.1397 -3.9428 6.1805 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 0.5370 2.7202 -0.0112 26 1 2.4906 4.4724 0.0004 27 1 5.4388 3.4551 -1.0283 28 1 5.0803 4.2698 0.5131 29 1 5.7980 2.6409 0.5132 30 1 3.0866 -1.0296 2.2362 31 1 1.5451 -1.9197 2.2358 32 1 2.7133 -3.9442 1.4089 33 1 4.2551 -3.0548 1.4091 34 1 5.0684 -6.2468 3.0560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274691971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:47 Heat of formation + Delta-G solvation = 19.244879 kcal Electronic energy + Delta-G solvation = -19222.966490 eV Core-core repulsion = 16092.709234 eV Total energy + Delta-G solvation = -3130.257256 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14249 -36.60679 -36.30604 -35.34267 -33.84883 -32.38540 -31.11892 -30.22509 -26.92753 -25.83751 -25.45483 -21.92650 -21.21352 -20.67784 -18.33293 -17.51999 -17.07271 -16.37952 -15.80941 -15.67415 -15.22396 -14.64434 -14.52061 -14.05216 -13.91655 -13.38892 -13.25222 -12.71369 -12.59741 -12.48738 -12.31443 -11.71752 -11.66483 -11.48348 -11.31143 -11.03641 -10.92884 -10.68218 -10.36087 -10.32623 -10.32033 -9.67520 -9.17799 -8.80503 -8.46551 -8.15119 -6.08791 -4.14203 0.70156 1.92512 2.32681 2.88015 3.08577 3.29683 3.34044 3.36277 4.31687 4.34724 4.43009 4.54947 4.78859 4.86750 5.11194 5.26134 5.36131 5.42590 5.45448 5.53855 5.61873 5.71143 5.75190 5.79204 5.87314 6.26902 6.53518 6.96030 7.02207 7.34055 7.40956 7.76568 7.84062 8.21421 8.88665 9.49987 11.02303 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.005190 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.401717 B = 5393.266746 C = 5972.924928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.915 5.915 3 C 0.311 3.689 4 C -0.287 4.287 5 C 0.067 3.933 6 N -0.373 5.373 7 C 0.105 3.895 8 N -0.290 5.290 9 S 2.577 3.423 10 O -0.959 6.959 11 O -0.927 6.927 12 C -0.581 4.581 13 C 0.030 3.970 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.149 0.851 26 H 0.175 0.825 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 19.401 -4.621 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.743 5.743 3 C 0.053 3.947 4 C -0.320 4.320 5 C -0.080 4.080 6 N -0.156 5.156 7 C -0.037 4.037 8 N -0.119 5.119 9 S 2.676 3.324 10 O -0.949 6.949 11 O -0.917 6.917 12 C -0.715 4.715 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.167 0.833 26 H 0.193 0.807 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.416 18.200 -5.485 19.515 hybrid contribution -0.794 0.437 1.605 1.844 sum -5.210 18.637 -3.880 19.737 Atomic orbital electron populations 1.21762 0.76757 1.04973 1.02968 1.55376 1.15440 1.17938 1.85566 1.19001 0.90216 0.86894 0.98570 1.21101 1.00233 0.89864 1.20772 1.22413 0.85314 0.98863 1.01390 1.48296 1.06193 1.03474 1.57660 1.21849 0.80083 0.98356 1.03374 1.78077 1.11511 0.93009 1.29286 1.06379 0.73947 0.72243 0.79809 1.93540 1.65331 1.60756 1.75317 1.93618 1.42318 1.81202 1.74565 1.30403 1.10231 1.10779 1.20052 1.18966 0.95046 0.86906 1.00009 1.20962 1.37202 1.06981 0.90751 0.92113 1.25062 0.95294 0.96068 0.98008 1.69950 1.37289 1.12671 1.32979 0.86521 0.78377 0.77710 0.84608 1.20064 1.21051 1.20116 0.91684 0.90176 0.88648 0.83293 0.80739 0.90806 0.89555 0.88920 0.86080 0.86305 0.94824 0.94712 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.38 59.84 0.62 1.56 16 2 N -0.91 -14.80 3.33 -66.84 -0.22 -15.02 16 3 C 0.31 5.08 7.47 -154.55 -1.15 3.92 16 4 C -0.29 -3.50 9.91 -39.82 -0.39 -3.89 16 5 C 0.07 0.70 11.48 -17.24 -0.20 0.50 16 6 N -0.37 -4.88 4.01 -68.17 -0.27 -5.15 16 7 C 0.10 0.88 11.47 59.85 0.69 1.57 16 8 N -0.29 -5.23 10.64 31.41 0.33 -4.90 16 9 S 2.58 51.92 5.37 -107.50 -0.58 51.35 16 10 O -0.96 -20.77 16.57 -57.54 -0.95 -21.72 16 11 O -0.93 -21.58 15.89 -57.54 -0.91 -22.49 16 12 C -0.58 -12.16 6.12 37.16 0.23 -11.93 16 13 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.73 6.88 -51.93 -0.36 0.37 16 24 H 0.10 1.15 6.91 -51.93 -0.36 0.79 16 25 H 0.15 1.37 7.31 -52.49 -0.38 0.98 16 26 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.12 2.43 8.14 -51.92 -0.42 2.01 16 31 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 32 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -38.41 306.67 -7.48 -45.88 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.45 Total: -1.74 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.76 Total: -21.14 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.57 Total: -51.31 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.87 Total: -44.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.58 Total: 51.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.41 -7.48 -45.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274691971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.130 kcal (2) G-P(sol) polarization free energy of solvation -38.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds