Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39985 * 119.99958 * 2 1 4 4 C 1.40420 * 125.97719 * 359.71731 * 3 2 1 5 5 C 1.35256 * 107.86615 * 179.82542 * 4 3 2 6 6 N 1.34958 * 107.85839 * 0.43132 * 5 4 3 7 7 C 1.46503 * 125.97066 * 179.72412 * 6 5 4 8 8 N 1.31228 * 125.97721 * 180.02562 * 3 2 1 9 9 S 1.65599 * 120.00159 * 180.02562 * 2 1 3 10 10 O 1.42105 * 104.27797 * 26.07081 * 9 2 1 11 11 O 1.42101 * 104.27901 * 153.92789 * 9 2 1 12 12 C 1.81397 * 104.44825 * 269.99969 * 9 2 1 13 13 C 1.53009 * 109.47235 * 179.97438 * 12 9 2 14 14 C 1.50697 * 109.46948 * 179.97438 * 13 12 9 15 15 H 1.07997 * 120.00322 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00266 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46941 * 59.99879 * 18 16 14 20 20 H 1.48495 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46812 * 300.00133 * 18 16 14 22 22 H 1.08995 * 109.47121 * 269.99717 * 1 2 3 23 23 H 1.09004 * 109.47485 * 30.00087 * 1 2 3 24 24 H 1.09004 * 109.46938 * 149.99650 * 1 2 3 25 25 H 1.08002 * 126.06665 * 359.96278 * 4 3 2 26 26 H 1.07998 * 126.07247 * 180.13686 * 5 4 3 27 27 H 1.08993 * 109.47228 * 269.97510 * 7 6 5 28 28 H 1.09001 * 109.46894 * 29.97844 * 7 6 5 29 29 H 1.09005 * 109.46812 * 149.97415 * 7 6 5 30 30 H 1.09004 * 109.47032 * 299.99803 * 12 9 2 31 31 H 1.09000 * 109.47124 * 60.00075 * 12 9 2 32 32 H 1.08995 * 109.47216 * 300.00010 * 13 12 9 33 33 H 1.09000 * 109.46805 * 60.00123 * 13 12 9 34 34 H 0.97001 * 119.99986 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1649 1.2123 0.0000 4 6 1.5932 2.4949 -0.0056 5 6 2.6001 3.3980 0.0004 6 7 3.7659 2.7181 -0.0002 7 6 5.1066 3.3088 -0.0006 8 7 3.4700 1.3490 -0.0005 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3559 -0.6063 11 8 3.5395 -1.1188 -0.6057 12 6 2.5193 -1.8268 1.7558 13 6 3.2809 -3.1472 1.8892 14 6 3.4694 -3.4731 3.3484 15 1 3.0842 -2.8056 4.1049 16 6 4.1328 -4.6241 3.7176 17 7 4.6014 -5.4372 2.7963 18 14 4.3659 -5.0285 5.5263 19 1 3.0387 -5.1538 6.1805 20 1 5.1051 -6.3098 5.6557 21 1 5.1397 -3.9428 6.1805 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 0.5370 2.7202 -0.0112 26 1 2.4906 4.4724 0.0004 27 1 5.4388 3.4551 -1.0283 28 1 5.0803 4.2698 0.5131 29 1 5.7980 2.6409 0.5132 30 1 3.0866 -1.0296 2.2362 31 1 1.5451 -1.9197 2.2358 32 1 2.7133 -3.9442 1.4089 33 1 4.2551 -3.0548 1.4091 34 1 5.0684 -6.2468 3.0560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274691971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = -9.642179 kcal Electronic energy + Delta-G solvation = -19224.219127 eV Core-core repulsion = 16092.709234 eV Total energy + Delta-G solvation = -3131.509893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10302 -38.28840 -37.46364 -37.01728 -35.94298 -33.27657 -33.18418 -31.16817 -27.83352 -27.66768 -26.65625 -23.71333 -22.48032 -21.70348 -19.79976 -18.99785 -18.41154 -17.98633 -17.31117 -17.01025 -16.55797 -16.34942 -15.96574 -15.18311 -15.08269 -14.70675 -14.50113 -14.27518 -13.78502 -13.60175 -13.44676 -13.23559 -13.18860 -13.07602 -12.93899 -12.84467 -12.70602 -12.29551 -12.19661 -11.84186 -11.61529 -11.37976 -11.07915 -10.66494 -9.83285 -9.17003 -8.28112 -6.43262 -0.88647 1.03080 1.24956 1.38921 1.43316 1.51691 1.87740 1.96248 2.36666 2.75281 3.04584 3.09097 3.34145 3.91458 3.96959 4.09784 4.18430 4.51339 4.59617 4.61339 4.66753 4.71146 4.77324 4.80528 4.88316 4.93620 5.19588 5.21136 5.34280 5.64391 5.87808 6.02255 6.27179 6.68994 6.77268 7.26791 8.84246 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.005190 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.401717 B = 5393.266746 C = 5972.924928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.910 5.910 3 C 0.284 3.716 4 C -0.296 4.296 5 C 0.088 3.912 6 N -0.379 5.379 7 C 0.095 3.905 8 N -0.363 5.363 9 S 2.602 3.398 10 O -0.980 6.980 11 O -0.966 6.966 12 C -0.577 4.577 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.977 3.023 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.180 0.820 26 H 0.231 0.769 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.011 0.989 33 H 0.003 0.997 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 22.379 -3.217 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.742 5.742 3 C 0.027 3.973 4 C -0.328 4.328 5 C -0.059 4.059 6 N -0.162 5.162 7 C -0.045 4.045 8 N -0.193 5.193 9 S 2.700 3.300 10 O -0.971 6.971 11 O -0.955 6.955 12 C -0.710 4.710 13 C -0.014 4.014 14 C -0.582 4.582 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.800 3.200 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.190 1.190 22 H 0.108 0.892 23 H 0.131 0.869 24 H 0.106 0.894 25 H 0.198 0.802 26 H 0.247 0.753 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.163 0.837 32 H 0.029 0.971 33 H 0.021 0.979 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.804 21.175 -4.075 22.331 hybrid contribution -0.364 -0.334 1.094 1.200 sum -6.168 20.841 -2.981 21.938 Atomic orbital electron populations 1.22165 0.74047 1.06253 1.05101 1.54885 1.16882 1.16831 1.85567 1.19396 0.90425 0.87768 0.99664 1.21521 1.02288 0.87979 1.20999 1.23301 0.83568 1.01007 0.98058 1.48636 1.08356 1.02157 1.57093 1.22205 0.78244 0.99554 1.04510 1.77918 1.13150 0.96662 1.31578 1.05286 0.73163 0.72740 0.78764 1.93502 1.65629 1.62495 1.75449 1.93561 1.44697 1.82199 1.75090 1.30270 1.10798 1.07803 1.22139 1.18803 0.94004 0.89368 0.99239 1.21446 1.37400 1.07563 0.91763 0.90808 1.26148 0.94658 0.95801 1.03489 1.70103 1.38151 1.13303 1.35743 0.85317 0.78995 0.77664 0.77989 1.18484 1.20622 1.18951 0.89194 0.86920 0.89379 0.80246 0.75254 0.89797 0.85062 0.90706 0.85407 0.83688 0.97080 0.97853 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 10.38 127.77 1.33 2.77 16 2 N -0.91 -28.90 3.33 -365.39 -1.22 -30.12 16 3 C 0.28 8.97 7.47 133.39 1.00 9.96 16 4 C -0.30 -6.23 9.91 22.11 0.22 -6.01 16 5 C 0.09 1.47 11.48 83.52 0.96 2.43 16 6 N -0.38 -9.19 4.01 -369.60 -1.48 -10.67 16 7 C 0.09 1.42 11.47 127.77 1.47 2.89 16 8 N -0.36 -13.12 10.64 -54.55 -0.58 -13.70 16 9 S 2.60 108.30 5.37 -56.49 -0.30 107.99 16 10 O -0.98 -43.79 16.57 -127.65 -2.12 -45.90 16 11 O -0.97 -47.38 15.89 -127.65 -2.03 -49.40 16 12 C -0.58 -24.78 6.12 71.99 0.44 -24.34 16 13 C 0.02 1.39 4.98 29.85 0.15 1.54 16 14 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 15 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 18 Si 0.98 44.29 29.54 68.60 2.03 46.31 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.11 1.67 6.88 -2.38 -0.02 1.66 16 24 H 0.09 2.02 6.91 -2.38 -0.02 2.01 16 25 H 0.18 2.45 7.31 -2.91 -0.02 2.43 16 26 H 0.23 1.04 8.06 -2.91 -0.02 1.02 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.13 5.26 8.14 -2.39 -0.02 5.24 16 31 H 0.14 5.32 8.14 -2.39 -0.02 5.30 16 32 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -88.18 306.67 1.93 -86.25 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.09 Total: 8.96 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 6.25 Total: -41.71 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -3.00 Total: -112.50 kcal Atomic # 8 Polarization: -91.16 SS G_CDS: -4.14 Total: -95.31 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 108.30 SS G_CDS: -0.30 Total: 107.99 kcal Total: -88.18 1.93 -86.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274691971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.606 kcal (2) G-P(sol) polarization free energy of solvation -88.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds