Wall clock time and date at job start Mon Mar 30 2020 01:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47514 * 2 1 4 4 C 1.36932 * 119.99825 * 293.79450 * 3 2 1 5 5 H 1.08004 * 120.00165 * 149.31344 * 4 3 2 6 6 C 1.38811 * 120.00127 * 329.30806 * 4 3 2 7 7 N 1.31621 * 120.00073 * 337.64925 * 6 4 3 8 8 Si 1.86805 * 120.00114 * 157.64363 * 6 4 3 9 9 H 1.48505 * 109.46943 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47081 * 120.00641 * 8 6 4 11 11 H 1.48506 * 109.46862 * 240.00604 * 8 6 4 12 12 S 1.65601 * 120.00130 * 113.78375 * 3 2 1 13 13 O 1.42093 * 106.40294 * 336.46903 * 12 3 2 14 14 O 1.42100 * 106.40208 * 203.54413 * 12 3 2 15 15 C 1.76202 * 107.21400 * 90.00698 * 12 3 2 16 16 C 1.35317 * 126.12479 * 269.99984 * 15 12 3 17 17 C 1.50699 * 126.04103 * 0.02562 * 16 15 12 18 18 C 1.39870 * 107.91861 * 180.28485 * 16 15 12 19 19 N 1.30839 * 108.20360 * 359.55530 * 18 16 15 20 20 N 1.34946 * 126.12937 * 90.02603 * 15 12 3 21 21 C 1.46500 * 126.03569 * 359.95704 * 20 15 12 22 22 H 1.09001 * 109.47392 * 299.99943 * 1 2 3 23 23 H 1.08998 * 109.47335 * 60.00303 * 1 2 3 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47392 * 240.00057 * 2 1 3 26 26 H 1.09008 * 109.47238 * 120.00228 * 2 1 3 27 27 H 0.97001 * 119.99761 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46929 * 90.00524 * 17 16 15 29 29 H 1.08999 * 109.47058 * 330.00452 * 17 16 15 30 30 H 1.08996 * 109.47069 * 210.00018 * 17 16 15 31 31 H 1.08000 * 125.90159 * 179.73598 * 18 16 15 32 32 H 1.09002 * 109.47656 * 90.00243 * 21 20 15 33 33 H 1.09001 * 109.46960 * 210.00104 * 21 20 15 34 34 H 1.08998 * 109.46988 * 329.99740 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7955 2.1861 -1.0851 5 1 1.6811 3.2519 -0.9525 6 6 1.7168 1.6325 -2.3556 7 7 2.2706 0.4636 -2.5995 8 14 0.8248 2.5462 -3.7190 9 1 0.2947 3.8288 -3.1908 10 1 1.7699 2.8220 -4.8306 11 1 -0.2989 1.7142 -4.2195 12 16 2.8397 1.9690 1.3123 13 8 2.4460 1.1731 2.4216 14 8 2.6922 3.3819 1.2781 15 6 4.5504 1.6408 1.0467 16 6 5.2172 0.5263 1.4265 17 6 4.6277 -0.6558 2.1519 18 6 6.5517 0.6678 1.0321 19 7 6.6793 1.8216 0.4284 20 7 5.4303 2.4560 0.4285 21 6 5.1320 3.7719 -0.1421 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2153 0.0766 -3.4873 28 1 4.2615 -1.3818 1.4260 29 1 3.8018 -0.3217 2.7799 30 1 5.3933 -1.1188 2.7744 31 1 7.3400 -0.0522 1.1948 32 1 5.2819 4.5397 0.6170 33 1 5.7956 3.9609 -0.9859 34 1 4.0967 3.7943 -0.4820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285021543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:56 Heat of formation + Delta-G solvation = 6.644172 kcal Electronic energy + Delta-G solvation = -20602.677822 eV Core-core repulsion = 17471.874158 eV Total energy + Delta-G solvation = -3130.803664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.45367 -36.27793 -36.06142 -34.52900 -32.93686 -32.01930 -31.05767 -29.37306 -27.44198 -25.08584 -24.73006 -21.66660 -21.06353 -20.08058 -18.51983 -17.19913 -16.78480 -16.19056 -15.19416 -14.77091 -14.57911 -14.35741 -13.65376 -13.40058 -12.99006 -12.86168 -12.80429 -12.39370 -12.15008 -12.11026 -11.73758 -11.64495 -11.40169 -11.13484 -11.04065 -10.83197 -10.65952 -10.57127 -10.32156 -10.08954 -9.97427 -9.86941 -9.53147 -8.97036 -8.09171 -7.75382 -6.71014 -4.29208 1.58122 2.19193 2.97304 3.06044 3.11679 3.14047 3.23575 3.83568 4.34324 4.56760 4.96061 5.12459 5.48343 5.67862 5.76099 5.80280 5.95395 6.03397 6.16067 6.25336 6.28697 6.29877 6.34703 6.60781 6.62275 6.80720 6.86719 7.02377 7.21877 7.27269 7.44073 7.52657 8.10035 8.17736 8.48733 8.96653 10.16230 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.009420 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.662534 B = 2971.610444 C = 3408.010896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 N -0.786 5.786 4 C -0.237 4.237 5 H 0.115 0.885 6 C 0.039 3.961 7 N -0.810 5.810 8 Si 0.922 3.078 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.273 1.273 12 S 2.517 3.483 13 O -0.990 6.990 14 O -0.986 6.986 15 C -0.448 4.448 16 C -0.161 4.161 17 C -0.103 4.103 18 C 0.022 3.978 19 N -0.295 5.295 20 N -0.310 5.310 21 C 0.094 3.906 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.278 0.722 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.178 0.822 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -1.180 0.454 1.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 N -0.610 5.610 4 C -0.388 4.388 5 H 0.133 0.867 6 C -0.177 4.177 7 N -0.447 5.447 8 Si 0.747 3.253 9 H -0.182 1.182 10 H -0.202 1.202 11 H -0.198 1.198 12 S 2.615 3.385 13 O -0.978 6.978 14 O -0.975 6.975 15 C -0.650 4.650 16 C -0.174 4.174 17 C -0.161 4.161 18 C -0.162 4.162 19 N -0.119 5.119 20 N -0.092 5.092 21 C -0.047 4.047 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.195 0.805 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.121 0.015 0.733 1.339 hybrid contribution 0.153 -0.525 -0.667 0.862 sum 1.274 -0.510 0.066 1.374 Atomic orbital electron populations 1.21891 0.96686 1.00033 1.01843 1.21517 0.93946 0.82836 1.03462 1.54136 1.51652 1.20477 1.34713 1.19997 1.40196 0.93702 0.84940 0.86741 1.25875 0.96381 0.96605 0.98852 1.69930 1.35282 1.16631 1.22868 0.85906 0.79384 0.80260 0.79768 1.18193 1.20184 1.19811 1.12816 0.72574 0.74882 0.78256 1.93293 1.80766 1.69810 1.53964 1.93322 1.85384 1.31109 1.87680 1.35384 1.23821 0.98950 1.06828 1.19975 0.93287 0.97261 1.06902 1.20557 1.01621 0.94331 0.99613 1.23764 0.97100 0.95668 0.99686 1.77013 1.03644 1.09117 1.22120 1.47899 1.04705 1.14676 1.41948 1.22133 1.04411 0.79295 0.98825 0.93608 0.92111 0.93313 0.87777 0.91985 0.91124 0.91745 0.88544 0.92293 0.80526 0.90767 0.89896 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.95 37.15 0.37 -2.33 16 2 C 0.11 2.28 5.84 -4.05 -0.02 2.25 16 3 N -0.79 -17.96 2.98 -59.91 -0.18 -18.14 16 4 C -0.24 -5.43 8.54 -15.06 -0.13 -5.56 16 5 H 0.12 2.60 7.35 -52.48 -0.39 2.22 16 6 C 0.04 0.86 4.64 -17.43 -0.08 0.77 16 7 N -0.81 -18.47 11.06 55.49 0.61 -17.86 16 8 Si 0.92 17.19 29.61 -169.99 -5.03 12.16 16 9 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 10 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 12 S 2.52 58.80 5.52 -107.50 -0.59 58.21 16 13 O -0.99 -23.79 13.89 -57.17 -0.79 -24.58 16 14 O -0.99 -24.23 14.64 -57.17 -0.84 -25.06 16 15 C -0.45 -10.23 7.00 -17.22 -0.12 -10.35 16 16 C -0.16 -3.39 6.09 -105.05 -0.64 -4.03 16 17 C -0.10 -1.87 10.04 36.01 0.36 -1.51 16 18 C 0.02 0.44 11.96 -17.36 -0.21 0.23 16 19 N -0.29 -6.33 12.58 30.62 0.39 -5.95 16 20 N -0.31 -6.85 4.01 -67.26 -0.27 -7.12 16 21 C 0.09 1.79 10.54 59.85 0.63 2.42 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.16 7.41 -51.93 -0.39 0.77 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.10 2.30 5.53 -51.93 -0.29 2.02 16 26 H 0.06 1.25 7.03 -51.92 -0.37 0.89 16 27 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.89 5.55 -51.93 -0.29 1.60 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.18 2.69 8.06 -52.49 -0.42 2.27 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.11 2.17 6.56 -51.93 -0.34 1.83 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -28.70 294.86 -6.25 -34.95 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.15 Total: 7.05 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.11 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.55 Total: -49.06 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.63 Total: -49.65 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 58.80 SS G_CDS: -0.59 Total: 58.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.70 -6.25 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285021543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.596 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds