Wall clock time and date at job start Mon Mar 30 2020 01:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47514 * 2 1 4 4 C 1.36932 * 119.99825 * 293.79450 * 3 2 1 5 5 H 1.08004 * 120.00165 * 149.31344 * 4 3 2 6 6 C 1.38811 * 120.00127 * 329.30806 * 4 3 2 7 7 N 1.31621 * 120.00073 * 337.64925 * 6 4 3 8 8 Si 1.86805 * 120.00114 * 157.64363 * 6 4 3 9 9 H 1.48505 * 109.46943 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47081 * 120.00641 * 8 6 4 11 11 H 1.48506 * 109.46862 * 240.00604 * 8 6 4 12 12 S 1.65601 * 120.00130 * 113.78375 * 3 2 1 13 13 O 1.42093 * 106.40294 * 336.46903 * 12 3 2 14 14 O 1.42100 * 106.40208 * 203.54413 * 12 3 2 15 15 C 1.76202 * 107.21400 * 90.00698 * 12 3 2 16 16 C 1.35317 * 126.12479 * 269.99984 * 15 12 3 17 17 C 1.50699 * 126.04103 * 0.02562 * 16 15 12 18 18 C 1.39870 * 107.91861 * 180.28485 * 16 15 12 19 19 N 1.30839 * 108.20360 * 359.55530 * 18 16 15 20 20 N 1.34946 * 126.12937 * 90.02603 * 15 12 3 21 21 C 1.46500 * 126.03569 * 359.95704 * 20 15 12 22 22 H 1.09001 * 109.47392 * 299.99943 * 1 2 3 23 23 H 1.08998 * 109.47335 * 60.00303 * 1 2 3 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47392 * 240.00057 * 2 1 3 26 26 H 1.09008 * 109.47238 * 120.00228 * 2 1 3 27 27 H 0.97001 * 119.99761 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46929 * 90.00524 * 17 16 15 29 29 H 1.08999 * 109.47058 * 330.00452 * 17 16 15 30 30 H 1.08996 * 109.47069 * 210.00018 * 17 16 15 31 31 H 1.08000 * 125.90159 * 179.73598 * 18 16 15 32 32 H 1.09002 * 109.47656 * 90.00243 * 21 20 15 33 33 H 1.09001 * 109.46960 * 210.00104 * 21 20 15 34 34 H 1.08998 * 109.46988 * 329.99740 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7955 2.1861 -1.0851 5 1 1.6811 3.2519 -0.9525 6 6 1.7168 1.6325 -2.3556 7 7 2.2706 0.4636 -2.5995 8 14 0.8248 2.5462 -3.7190 9 1 0.2947 3.8288 -3.1908 10 1 1.7699 2.8220 -4.8306 11 1 -0.2989 1.7142 -4.2195 12 16 2.8397 1.9690 1.3123 13 8 2.4460 1.1731 2.4216 14 8 2.6922 3.3819 1.2781 15 6 4.5504 1.6408 1.0467 16 6 5.2172 0.5263 1.4265 17 6 4.6277 -0.6558 2.1519 18 6 6.5517 0.6678 1.0321 19 7 6.6793 1.8216 0.4284 20 7 5.4303 2.4560 0.4285 21 6 5.1320 3.7719 -0.1421 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2153 0.0766 -3.4873 28 1 4.2615 -1.3818 1.4260 29 1 3.8018 -0.3217 2.7799 30 1 5.3933 -1.1188 2.7744 31 1 7.3400 -0.0522 1.1948 32 1 5.2819 4.5397 0.6170 33 1 5.7956 3.9609 -0.9859 34 1 4.0967 3.7943 -0.4820 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285021543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:55 Heat of formation + Delta-G solvation = -12.513841 kcal Electronic energy + Delta-G solvation = -20603.508576 eV Core-core repulsion = 17471.874158 eV Total energy + Delta-G solvation = -3131.634418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03565 -37.98884 -37.86347 -36.35845 -34.48881 -33.74993 -32.61151 -31.00127 -28.96577 -26.80772 -26.24075 -23.30652 -22.70047 -21.63417 -20.25522 -18.91406 -18.51916 -17.88670 -16.88714 -16.39090 -16.22036 -16.02286 -15.29939 -14.93309 -14.62677 -14.42745 -14.27457 -14.01060 -13.75402 -13.58269 -13.27900 -13.12844 -13.05243 -12.73077 -12.64871 -12.58142 -12.41916 -12.11497 -11.93914 -11.69947 -11.64135 -11.51939 -11.20961 -10.59362 -9.81411 -9.34179 -8.42136 -6.06709 -0.15218 0.53509 1.49280 1.54731 1.59807 1.66674 1.69254 2.25464 2.63608 2.84238 3.20629 3.61679 3.81810 4.24321 4.28677 4.33324 4.41691 4.48296 4.65476 4.72503 4.75551 4.81829 4.90116 5.02748 5.12612 5.27934 5.31958 5.34314 5.63732 5.74934 5.78389 5.93264 6.36489 6.58718 6.72744 7.21984 8.45491 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.009420 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.662534 B = 2971.610444 C = 3408.010896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 N -0.788 5.788 4 C -0.248 4.248 5 H 0.110 0.890 6 C 0.014 3.986 7 N -0.826 5.826 8 Si 0.981 3.019 9 H -0.256 1.256 10 H -0.275 1.275 11 H -0.265 1.265 12 S 2.508 3.492 13 O -1.005 7.005 14 O -1.008 7.008 15 C -0.478 4.478 16 C -0.172 4.172 17 C -0.102 4.102 18 C 0.025 3.975 19 N -0.311 5.311 20 N -0.325 5.325 21 C 0.087 3.913 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.286 0.714 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -1.942 -0.449 2.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 N -0.611 5.611 4 C -0.401 4.401 5 H 0.128 0.872 6 C -0.201 4.201 7 N -0.464 5.464 8 Si 0.802 3.198 9 H -0.179 1.179 10 H -0.200 1.200 11 H -0.189 1.189 12 S 2.609 3.391 13 O -0.994 6.994 14 O -0.997 6.997 15 C -0.681 4.681 16 C -0.185 4.185 17 C -0.160 4.160 18 C -0.159 4.159 19 N -0.135 5.135 20 N -0.108 5.108 21 C -0.053 4.053 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.192 -0.751 -0.136 1.415 hybrid contribution 0.171 -0.341 -0.430 0.575 sum 1.363 -1.092 -0.566 1.836 Atomic orbital electron populations 1.21867 0.94872 1.01848 1.01414 1.21640 0.95484 0.81963 1.03084 1.54317 1.50973 1.21088 1.34730 1.20209 1.40352 0.93871 0.85673 0.87240 1.26558 0.96294 0.97060 1.00172 1.69981 1.35303 1.17338 1.23772 0.85040 0.78382 0.79342 0.76996 1.17924 1.20029 1.18946 1.13464 0.72768 0.74381 0.78506 1.93252 1.81304 1.69820 1.54997 1.93266 1.85921 1.32529 1.88018 1.35398 1.24058 1.00325 1.08293 1.20476 0.93963 0.97512 1.06556 1.20605 1.01996 0.93612 0.99764 1.24464 0.97592 0.95627 0.98203 1.76963 1.03652 1.09990 1.22860 1.48171 1.04790 1.15389 1.42412 1.22283 1.04176 0.78848 1.00013 0.93780 0.92718 0.90398 0.88756 0.91661 0.90392 0.90927 0.90392 0.88854 0.76297 0.89621 0.87629 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.95 71.98 0.72 -4.37 16 2 C 0.10 4.33 5.84 86.38 0.50 4.83 16 3 N -0.79 -36.17 2.98 -343.46 -1.02 -37.19 16 4 C -0.25 -11.36 8.54 84.03 0.72 -10.64 16 5 H 0.11 5.05 7.35 -2.91 -0.02 5.02 16 6 C 0.01 0.61 4.64 84.86 0.39 1.00 16 7 N -0.83 -36.87 11.06 21.65 0.24 -36.63 16 8 Si 0.98 33.97 29.61 68.60 2.03 36.01 16 9 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 10 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 11 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 12 S 2.51 119.18 5.52 -56.49 -0.31 118.87 16 13 O -1.00 -49.10 13.89 -128.00 -1.78 -50.88 16 14 O -1.01 -50.84 14.64 -128.00 -1.87 -52.71 16 15 C -0.48 -21.90 7.00 83.54 0.58 -21.31 16 16 C -0.17 -7.06 6.09 -20.14 -0.12 -7.18 16 17 C -0.10 -3.55 10.04 71.24 0.72 -2.84 16 18 C 0.03 0.95 11.96 85.24 1.02 1.97 16 19 N -0.31 -12.99 12.58 -57.02 -0.72 -13.70 16 20 N -0.32 -14.31 4.01 -366.71 -1.47 -15.78 16 21 C 0.09 3.31 10.54 127.77 1.35 4.66 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 2.02 7.41 -2.39 -0.02 2.00 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.09 4.13 5.53 -2.39 -0.01 4.12 16 26 H 0.07 2.63 7.03 -2.38 -0.02 2.61 16 27 H 0.29 11.73 8.31 -92.71 -0.77 10.96 16 28 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 29 H 0.08 3.03 5.55 -2.39 -0.01 3.01 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.22 5.90 8.06 -2.91 -0.02 5.88 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.10 3.88 6.56 -2.39 -0.02 3.86 16 Total: -1.00 -60.38 294.86 2.08 -58.30 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.11 Total: 27.60 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 5.88 Total: -33.88 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -2.97 Total: -103.30 kcal Atomic # 8 Polarization: -99.94 SS G_CDS: -3.65 Total: -103.59 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.01 kcal Atomic # 16 Polarization: 119.18 SS G_CDS: -0.31 Total: 118.87 kcal Total: -60.38 2.08 -58.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285021543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.787 kcal (2) G-P(sol) polarization free energy of solvation -60.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds