Wall clock time and date at job start Mon Mar 30 2020 01:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28002 * 118.32839 * 2 1 4 4 C 1.31477 * 124.23260 * 180.02562 * 3 2 1 5 5 C 1.47329 * 120.34263 * 180.02562 * 4 3 2 6 6 O 1.21648 * 120.00219 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99853 * 0.02562 * 5 4 3 8 8 C 1.36860 * 120.00147 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99661 * 0.02562 * 8 7 5 10 10 C 1.39042 * 119.99991 * 179.97438 * 8 7 5 11 11 N 1.31371 * 120.00065 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 120.00149 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47243 * 89.99621 * 12 10 8 14 14 H 1.48497 * 109.46941 * 209.99746 * 12 10 8 15 15 H 1.48500 * 109.46851 * 330.00178 * 12 10 8 16 16 C 1.47540 * 119.32082 * 0.02562 * 4 3 2 17 17 O 1.21854 * 121.92204 * 180.02562 * 16 4 3 18 18 C 1.47447 * 116.15910 * 0.02562 * 16 4 3 19 19 C 1.39233 * 122.16098 * 180.02562 * 18 16 4 20 20 C 1.36803 * 119.52076 * 179.97438 * 19 18 16 21 21 C 1.38852 * 120.49280 * 359.97438 * 20 19 18 22 22 C 1.37753 * 120.86516 * 359.76898 * 21 20 19 23 23 C 1.37322 * 118.32982 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47342 * 269.93064 * 1 2 3 25 25 H 1.08998 * 109.46901 * 29.93697 * 1 2 3 26 26 H 1.08998 * 109.46965 * 149.93240 * 1 2 3 27 27 H 0.97006 * 119.99752 * 0.02562 * 7 5 4 28 28 H 0.96999 * 119.99681 * 179.97438 * 11 10 8 29 29 H 1.07996 * 120.24137 * 359.97438 * 19 18 16 30 30 H 1.07993 * 119.75424 * 179.97438 * 20 19 18 31 31 H 1.08000 * 119.56344 * 179.97438 * 21 20 19 32 32 H 1.08001 * 120.16451 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0724 1.1267 0.0000 4 6 3.3802 1.2620 -0.0005 5 6 3.9897 2.6033 0.0001 6 8 5.2004 2.7212 -0.0008 7 7 3.2058 3.6996 0.0017 8 6 3.7720 4.9457 0.0018 9 1 4.8469 5.0503 0.0001 10 6 2.9633 6.0767 0.0029 11 7 3.5067 7.2728 0.0034 12 14 1.1040 5.8956 0.0050 13 1 0.6129 5.8473 1.4056 14 1 0.4930 7.0545 -0.6941 15 1 0.7281 4.6409 -0.6947 16 6 4.2312 0.0567 -0.0017 17 8 5.4477 0.1269 -0.0017 18 6 3.5250 -1.2376 -0.0028 19 6 4.2047 -2.4528 -0.0034 20 6 3.4949 -3.6222 -0.0039 21 6 2.1065 -3.6037 -0.0033 22 6 1.4156 -2.4120 0.0026 23 6 2.1166 -1.2088 -0.0005 24 1 -0.3634 -0.0012 1.0276 25 1 -0.3633 0.8905 -0.5128 26 1 -0.3633 -0.8894 -0.5149 27 1 2.2403 3.6056 0.0028 28 1 2.9425 8.0618 0.0038 29 1 5.2845 -2.4719 -0.0035 30 1 4.0183 -4.5668 -0.0048 31 1 1.5612 -4.5359 -0.0041 32 1 0.3356 -2.4108 0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339926374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:34 Heat of formation + Delta-G solvation = 21.232191 kcal Electronic energy + Delta-G solvation = -20256.489104 eV Core-core repulsion = 16990.874073 eV Total energy + Delta-G solvation = -3265.615031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52441 -38.58574 -38.28315 -37.38079 -34.00380 -33.65244 -31.75390 -31.25980 -30.70968 -27.75788 -25.45746 -24.71241 -23.93675 -21.62101 -20.43540 -19.19214 -18.88610 -17.79354 -17.06202 -16.27263 -15.86651 -15.50044 -15.00580 -14.71644 -14.56226 -14.18414 -14.11792 -13.53768 -13.40486 -12.86705 -12.66985 -12.62116 -12.34874 -12.22797 -12.18123 -11.65167 -11.26108 -11.12681 -10.62267 -10.08799 -9.86528 -9.59828 -9.36278 -9.28545 -8.50024 -8.25937 -7.75648 -6.45843 -3.85478 0.58532 0.69446 1.60888 2.24032 2.78453 3.03721 3.05962 3.10578 3.66069 3.82298 4.02326 4.18453 4.26926 4.43811 4.57764 4.81565 4.89381 5.00429 5.04685 5.05446 5.23353 5.30175 5.38330 5.49057 5.60721 5.69119 5.97331 6.16234 6.30203 6.40966 6.63773 7.45592 7.85874 8.05021 8.26403 8.52546 8.84645 9.32021 9.80703 10.65316 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.005546 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.158392 B = 5047.054577 C = 6052.069146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.345 5.345 3 N -0.200 5.200 4 C -0.011 4.011 5 C 0.501 3.499 6 O -0.550 6.550 7 N -0.555 5.555 8 C -0.291 4.291 9 H 0.127 0.873 10 C 0.044 3.956 11 N -0.861 5.861 12 Si 0.878 3.122 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.263 1.263 16 C 0.403 3.597 17 O -0.424 6.424 18 C -0.202 4.202 19 C -0.023 4.023 20 C -0.164 4.164 21 C -0.056 4.056 22 C -0.174 4.174 23 C 0.160 3.840 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.379 0.621 28 H 0.278 0.722 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -20.599 -0.077 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.144 5.144 3 N -0.029 5.029 4 C -0.190 4.190 5 C 0.286 3.714 6 O -0.430 6.430 7 N -0.193 5.193 8 C -0.421 4.421 9 H 0.144 0.856 10 C -0.162 4.162 11 N -0.499 5.499 12 Si 0.703 3.297 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.188 1.188 16 C 0.278 3.722 17 O -0.294 6.294 18 C -0.207 4.207 19 C -0.041 4.041 20 C -0.183 4.183 21 C -0.075 4.075 22 C -0.195 4.195 23 C 0.054 3.946 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.213 0.787 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.457 -19.715 -0.077 22.803 hybrid contribution -1.140 -0.561 0.002 1.270 sum -12.597 -20.276 -0.075 23.871 Atomic orbital electron populations 1.22220 0.74110 1.05170 1.04083 1.44307 1.07735 0.99160 1.63217 1.70567 1.13708 1.09707 1.08942 1.25218 0.87237 0.98358 1.08201 1.16368 0.86664 0.81090 0.87244 1.90766 1.12501 1.84322 1.55440 1.42154 1.08023 1.05923 1.63246 1.19627 0.96545 0.79695 1.46267 0.85593 1.25129 0.99079 0.94826 0.97137 1.69608 1.36345 0.97580 1.46413 0.86658 0.84803 0.78861 0.79365 1.19201 1.19829 1.18788 1.20165 0.89281 0.86915 0.75806 1.90744 1.13926 1.87969 1.36730 1.20353 0.91700 0.96605 1.12024 1.20805 1.00862 0.90265 0.92178 1.20881 0.94133 0.98304 1.05002 1.21133 0.94372 0.97385 0.94637 1.20786 1.00040 0.90277 1.08428 1.18818 0.91816 0.87086 0.96837 0.90338 0.88471 0.89063 0.78714 0.91144 0.84199 0.85171 0.85101 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.27 59.85 0.61 1.31 16 2 N -0.35 -4.78 3.70 -65.39 -0.24 -5.02 16 3 N -0.20 -3.60 9.96 34.58 0.34 -3.26 16 4 C -0.01 -0.24 7.05 -80.53 -0.57 -0.81 16 5 C 0.50 13.08 7.75 -12.56 -0.10 12.98 16 6 O -0.55 -16.58 15.15 -14.69 -0.22 -16.81 16 7 N -0.56 -14.21 5.07 -11.99 -0.06 -14.27 16 8 C -0.29 -8.35 10.16 -15.01 -0.15 -8.50 16 9 H 0.13 4.07 7.38 -52.49 -0.39 3.69 16 10 C 0.04 1.20 5.50 -17.45 -0.10 1.10 16 11 N -0.86 -24.57 13.95 55.50 0.77 -23.79 16 12 Si 0.88 19.14 27.74 -169.99 -4.72 14.42 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.26 -5.31 6.52 56.52 0.37 -4.95 16 16 C 0.40 8.39 7.18 -32.04 -0.23 8.16 16 17 O -0.42 -10.12 16.02 -14.88 -0.24 -10.36 16 18 C -0.20 -3.22 5.90 -104.78 -0.62 -3.84 16 19 C -0.02 -0.29 9.66 -39.73 -0.38 -0.68 16 20 C -0.16 -1.55 9.98 -39.87 -0.40 -1.95 16 21 C -0.06 -0.46 10.00 -39.53 -0.40 -0.85 16 22 C -0.17 -1.60 9.16 -39.38 -0.36 -1.96 16 23 C 0.16 2.13 6.57 -84.03 -0.55 1.58 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.09 0.46 6.08 -51.93 -0.32 0.14 16 27 H 0.38 8.68 5.11 -40.82 -0.21 8.47 16 28 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.14 1.76 7.87 -52.49 -0.41 1.35 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.80 6.14 -52.49 -0.32 0.48 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -35.96 284.78 -5.81 -41.77 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -2.51 Total: 6.48 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -3.24 Total: 6.55 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.82 Total: -46.35 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.46 Total: -27.17 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.72 Total: 14.42 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.96 -5.81 -41.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.005 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds