Wall clock time and date at job start Mon Mar 30 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28002 * 118.32839 * 2 1 4 4 C 1.31477 * 124.23260 * 180.02562 * 3 2 1 5 5 C 1.47329 * 120.34263 * 180.02562 * 4 3 2 6 6 O 1.21648 * 120.00219 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99853 * 0.02562 * 5 4 3 8 8 C 1.36860 * 120.00147 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99661 * 0.02562 * 8 7 5 10 10 C 1.39042 * 119.99991 * 179.97438 * 8 7 5 11 11 N 1.31371 * 120.00065 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 120.00149 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47243 * 89.99621 * 12 10 8 14 14 H 1.48497 * 109.46941 * 209.99746 * 12 10 8 15 15 H 1.48500 * 109.46851 * 330.00178 * 12 10 8 16 16 C 1.47540 * 119.32082 * 0.02562 * 4 3 2 17 17 O 1.21854 * 121.92204 * 180.02562 * 16 4 3 18 18 C 1.47447 * 116.15910 * 0.02562 * 16 4 3 19 19 C 1.39233 * 122.16098 * 180.02562 * 18 16 4 20 20 C 1.36803 * 119.52076 * 179.97438 * 19 18 16 21 21 C 1.38852 * 120.49280 * 359.97438 * 20 19 18 22 22 C 1.37753 * 120.86516 * 359.76898 * 21 20 19 23 23 C 1.37322 * 118.32982 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47342 * 269.93064 * 1 2 3 25 25 H 1.08998 * 109.46901 * 29.93697 * 1 2 3 26 26 H 1.08998 * 109.46965 * 149.93240 * 1 2 3 27 27 H 0.97006 * 119.99752 * 0.02562 * 7 5 4 28 28 H 0.96999 * 119.99681 * 179.97438 * 11 10 8 29 29 H 1.07996 * 120.24137 * 359.97438 * 19 18 16 30 30 H 1.07993 * 119.75424 * 179.97438 * 20 19 18 31 31 H 1.08000 * 119.56344 * 179.97438 * 21 20 19 32 32 H 1.08001 * 120.16451 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0724 1.1267 0.0000 4 6 3.3802 1.2620 -0.0005 5 6 3.9897 2.6033 0.0001 6 8 5.2004 2.7212 -0.0008 7 7 3.2058 3.6996 0.0017 8 6 3.7720 4.9457 0.0018 9 1 4.8469 5.0503 0.0001 10 6 2.9633 6.0767 0.0029 11 7 3.5067 7.2728 0.0034 12 14 1.1040 5.8956 0.0050 13 1 0.6129 5.8473 1.4056 14 1 0.4930 7.0545 -0.6941 15 1 0.7281 4.6409 -0.6947 16 6 4.2312 0.0567 -0.0017 17 8 5.4477 0.1269 -0.0017 18 6 3.5250 -1.2376 -0.0028 19 6 4.2047 -2.4528 -0.0034 20 6 3.4949 -3.6222 -0.0039 21 6 2.1065 -3.6037 -0.0033 22 6 1.4156 -2.4120 0.0026 23 6 2.1166 -1.2088 -0.0005 24 1 -0.3634 -0.0012 1.0276 25 1 -0.3633 0.8905 -0.5128 26 1 -0.3633 -0.8894 -0.5149 27 1 2.2403 3.6056 0.0028 28 1 2.9425 8.0618 0.0038 29 1 5.2845 -2.4719 -0.0035 30 1 4.0183 -4.5668 -0.0048 31 1 1.5612 -4.5359 -0.0041 32 1 0.3356 -2.4108 0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339926374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:33 Heat of formation + Delta-G solvation = -6.944234 kcal Electronic energy + Delta-G solvation = -20257.710925 eV Core-core repulsion = 16990.874073 eV Total energy + Delta-G solvation = -3266.836853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77212 -40.36325 -39.57680 -38.82441 -36.11490 -34.96788 -33.76067 -32.32507 -31.70893 -28.97606 -27.13261 -25.86245 -25.33241 -22.71255 -22.09456 -20.92950 -20.29871 -19.32992 -18.23542 -17.51325 -17.36215 -16.91855 -16.81391 -15.69573 -15.68178 -15.62459 -15.40410 -15.13968 -15.12755 -14.75103 -14.26481 -13.66264 -13.43671 -13.25698 -13.11236 -12.99570 -12.78575 -12.48506 -12.18194 -12.02596 -11.62866 -11.13099 -10.88473 -10.35802 -10.34589 -10.19550 -8.94754 -8.50871 -6.07980 -0.64547 -0.41962 0.53040 1.13781 1.26783 1.29807 1.43034 1.49459 2.18206 2.25933 2.32340 2.76147 3.03804 3.14133 3.19516 3.53477 3.64090 4.10183 4.15215 4.25244 4.29159 4.34897 4.47591 4.57389 4.74746 4.88782 4.90664 5.28484 5.39666 5.40052 5.46136 5.79957 5.83146 6.44869 6.46320 6.72260 6.84744 7.25224 7.80189 8.65821 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.005546 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.158392 B = 5047.054577 C = 6052.069146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.315 5.315 3 N -0.154 5.154 4 C -0.086 4.086 5 C 0.508 3.492 6 O -0.607 6.607 7 N -0.556 5.556 8 C -0.335 4.335 9 H 0.060 0.940 10 C -0.005 4.005 11 N -0.916 5.916 12 Si 0.960 3.040 13 H -0.250 1.250 14 H -0.262 1.262 15 H -0.234 1.234 16 C 0.388 3.612 17 O -0.493 6.493 18 C -0.218 4.218 19 C -0.053 4.053 20 C -0.135 4.135 21 C -0.041 4.041 22 C -0.142 4.142 23 C 0.128 3.872 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.139 0.861 27 H 0.394 0.606 28 H 0.286 0.714 29 H 0.126 0.874 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 -26.289 -0.085 32.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 N 0.011 4.989 4 C -0.260 4.260 5 C 0.294 3.706 6 O -0.491 6.491 7 N -0.197 5.197 8 C -0.464 4.464 9 H 0.078 0.922 10 C -0.206 4.206 11 N -0.555 5.555 12 Si 0.778 3.222 13 H -0.174 1.174 14 H -0.186 1.186 15 H -0.158 1.158 16 C 0.270 3.730 17 O -0.370 6.370 18 C -0.223 4.223 19 C -0.071 4.071 20 C -0.153 4.153 21 C -0.060 4.060 22 C -0.162 4.162 23 C 0.025 3.975 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.157 0.843 27 H 0.230 0.770 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.204 0.796 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.234 -25.406 -0.085 31.272 hybrid contribution 0.720 0.604 0.012 0.940 sum -17.514 -24.802 -0.073 30.362 Atomic orbital electron populations 1.22986 0.69793 1.08043 1.06930 1.45161 1.09980 0.98510 1.58162 1.70376 1.12212 1.12419 1.03909 1.24169 0.88774 0.96219 1.16807 1.17100 0.86177 0.82928 0.84355 1.90698 1.15432 1.86005 1.56934 1.41795 1.08406 1.04622 1.64838 1.19123 0.94216 0.82234 1.50840 0.92222 1.26170 1.05877 0.93376 0.95208 1.69763 1.39163 0.98770 1.47833 0.85442 0.75736 0.80381 0.80620 1.17356 1.18576 1.15766 1.20689 0.88827 0.88801 0.74712 1.90688 1.16055 1.88866 1.41404 1.20265 0.93254 0.94912 1.13830 1.20911 1.00855 0.90850 0.94525 1.21406 0.95377 0.97920 1.00640 1.21834 0.93627 0.99199 0.91293 1.21439 1.02431 0.88170 1.04189 1.19149 0.90837 0.88280 0.99267 0.87409 0.87790 0.84264 0.76971 0.90458 0.85619 0.81654 0.79603 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.27 127.77 1.31 1.85 16 2 N -0.31 -7.32 3.70 -360.81 -1.33 -8.65 16 3 N -0.15 -5.35 9.96 -44.50 -0.44 -5.79 16 4 C -0.09 -3.94 7.05 44.05 0.31 -3.63 16 5 C 0.51 29.12 7.75 86.63 0.67 29.79 16 6 O -0.61 -41.34 15.15 14.87 0.23 -41.11 16 7 N -0.56 -30.58 5.07 -310.07 -1.57 -32.15 16 8 C -0.33 -21.15 10.16 84.10 0.85 -20.30 16 9 H 0.06 4.43 7.38 -2.91 -0.02 4.41 16 10 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 11 N -0.92 -55.96 13.95 21.68 0.30 -55.66 16 12 Si 0.96 39.69 27.74 68.60 1.90 41.59 16 13 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 14 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 15 H -0.23 -8.47 6.52 99.48 0.65 -7.82 16 16 C 0.39 17.47 7.18 27.15 0.20 17.66 16 17 O -0.49 -26.53 16.02 14.21 0.23 -26.31 16 18 C -0.22 -6.81 5.90 -19.97 -0.12 -6.92 16 19 C -0.05 -1.29 9.66 22.17 0.21 -1.07 16 20 C -0.13 -1.77 9.98 22.08 0.22 -1.55 16 21 C -0.04 -0.30 10.00 22.30 0.22 -0.08 16 22 C -0.14 -1.40 9.16 22.40 0.21 -1.20 16 23 C 0.13 2.84 6.57 39.17 0.26 3.09 16 24 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.10 0.96 8.13 -2.39 -0.02 0.94 16 26 H 0.14 0.02 6.08 -2.39 -0.01 0.01 16 27 H 0.39 18.38 5.11 -92.70 -0.47 17.91 16 28 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.13 3.34 7.87 -2.91 -0.02 3.32 16 30 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 32 H 0.19 0.00 6.14 -2.91 -0.02 -0.01 16 Total: -1.00 -98.66 284.78 4.78 -93.88 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.66 Total: 16.40 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 4.81 Total: 17.80 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.05 Total: -102.25 kcal Atomic # 8 Polarization: -67.87 SS G_CDS: 0.45 Total: -67.42 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.90 Total: 41.59 kcal Total: -98.66 4.78 -93.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.934 kcal (2) G-P(sol) polarization free energy of solvation -98.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds