Wall clock time and date at job start Mon Mar 30 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00071 * 2 1 4 4 C 1.50698 * 109.46957 * 66.04393 * 3 2 1 5 5 H 1.07998 * 120.00227 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99982 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99845 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47338 * 90.00368 * 8 6 4 10 10 H 1.48501 * 109.46977 * 210.00356 * 8 6 4 11 11 H 1.48503 * 109.46986 * 329.99771 * 8 6 4 12 12 C 1.46908 * 110.99954 * 236.04649 * 2 1 3 13 13 C 1.53008 * 109.46840 * 199.84866 * 12 2 1 14 14 H 1.08995 * 109.47200 * 300.46417 * 13 12 2 15 15 O 1.42902 * 109.47063 * 60.46356 * 13 12 2 16 16 C 1.53002 * 109.46805 * 180.46429 * 13 12 2 17 17 N 1.46495 * 109.46787 * 180.02562 * 16 13 12 18 18 N 1.37794 * 121.69287 * 270.01936 * 17 16 13 19 19 C 1.29064 * 117.34812 * 180.02562 * 18 17 16 20 20 S 1.77180 * 105.70645 * 0.02562 * 19 18 17 21 21 C 1.34407 * 121.69462 * 89.74215 * 17 16 13 22 22 O 1.21846 * 127.26311 * 359.97438 * 21 17 16 23 23 H 1.09000 * 109.47256 * 188.77567 * 1 2 3 24 24 H 1.08992 * 109.47075 * 308.77654 * 1 2 3 25 25 H 1.09007 * 109.47271 * 68.77905 * 1 2 3 26 26 H 1.09005 * 109.47508 * 186.04580 * 3 2 1 27 27 H 1.09004 * 109.47216 * 306.04449 * 3 2 1 28 28 H 0.97006 * 119.99984 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47126 * 79.85418 * 12 2 1 30 30 H 1.09000 * 109.47133 * 319.84652 * 12 2 1 31 31 H 0.96700 * 113.99993 * 59.99722 * 15 13 12 32 32 H 1.09007 * 109.46919 * 300.00212 * 16 13 12 33 33 H 1.08994 * 109.47130 * 59.99575 * 16 13 12 34 34 H 1.07997 * 127.14496 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0015 0.6154 8 14 1.5837 4.1864 3.1387 9 1 2.6606 3.9494 4.1333 10 1 1.4319 5.6462 2.9119 11 1 0.3057 3.6295 3.6503 12 6 1.9954 -0.7660 -1.1377 13 6 3.4449 -1.1666 -0.8556 14 1 4.0463 -0.2706 -0.7027 15 8 3.4946 -1.9797 0.3185 16 6 3.9969 -1.9545 -2.0454 17 7 5.3845 -2.3386 -1.7751 18 7 6.4419 -1.5295 -2.1302 19 6 7.6299 -1.9504 -1.8524 20 16 7.4100 -3.5225 -1.0654 21 6 5.6907 -3.4955 -1.1634 22 8 4.9155 -4.3470 -0.7650 23 1 -0.3634 -1.0156 0.1568 24 1 -0.3633 0.6436 0.8011 25 1 -0.3634 0.3720 -0.9580 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8310 28 1 2.9880 4.9174 0.7777 29 1 1.9566 -0.1526 -2.0378 30 1 1.3923 -1.6624 -1.2824 31 1 2.9803 -2.7961 0.2536 32 1 3.3954 -2.8506 -2.1983 33 1 3.9589 -1.3343 -2.9409 34 1 8.5641 -1.4490 -2.0580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424127613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:43 Heat of formation + Delta-G solvation = -10.932839 kcal Electronic energy + Delta-G solvation = -19118.245987 eV Core-core repulsion = 15986.680127 eV Total energy + Delta-G solvation = -3131.565860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77277 -37.85547 -37.78519 -35.53459 -33.04872 -32.49117 -30.06265 -27.43561 -26.85115 -25.18799 -23.85495 -22.34507 -20.88688 -20.13664 -19.52931 -17.51652 -16.70505 -16.45218 -15.99348 -15.37274 -15.13325 -14.89481 -14.65185 -14.51669 -13.71227 -13.46202 -13.37651 -13.22299 -12.66171 -12.09882 -11.96977 -11.49368 -11.26035 -11.02219 -10.91414 -10.71028 -10.63667 -10.42513 -10.34724 -10.14364 -9.77991 -9.46346 -9.16432 -8.81524 -8.42789 -7.24371 -6.02625 -4.03126 0.36912 1.06151 1.27351 1.84275 2.10101 3.33362 3.38954 3.42721 4.25702 4.39591 4.52418 4.68842 4.92503 5.11625 5.23604 5.31810 5.34549 5.44768 5.56459 5.71251 5.94178 6.10241 6.28600 6.32696 6.71425 6.98264 7.23823 7.26072 7.28855 7.78835 8.02218 8.07763 8.18431 8.53502 9.04048 9.60823 11.08490 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004477 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.455679 B = 6252.126339 C = 6805.195887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.029 3.971 13 C 0.099 3.901 14 H 0.110 0.890 15 O -0.536 6.536 16 C 0.098 3.902 17 N -0.430 5.430 18 N -0.221 5.221 19 C 0.071 3.929 20 S -0.040 6.040 21 C 0.483 3.517 22 O -0.459 6.459 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.029 0.971 27 H -0.010 1.010 28 H 0.261 0.739 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.367 0.633 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 -13.042 -8.648 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.101 4.101 13 C 0.038 3.962 14 H 0.128 0.872 15 O -0.339 6.339 16 C -0.028 4.028 17 N -0.254 5.254 18 N -0.035 5.035 19 C -0.249 4.249 20 S 0.189 5.811 21 C 0.161 3.839 22 O -0.334 6.334 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.213 0.787 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 8.401 -13.264 -7.724 17.498 hybrid contribution -1.249 0.939 -0.345 1.600 sum 7.152 -12.326 -8.069 16.376 Atomic orbital electron populations 1.22228 0.88584 1.00080 1.00158 1.61991 1.06700 1.17828 1.38911 1.19775 0.95375 0.81440 0.96654 1.21151 1.34726 0.96815 1.01673 0.91843 1.24981 0.95307 0.97346 0.96980 1.69955 1.38491 1.11488 1.34042 0.86495 0.78905 0.78335 0.83662 1.20605 1.21337 1.19850 1.22588 0.94966 0.98531 0.94047 1.22347 0.96416 0.93717 0.83702 0.87243 1.86683 1.73717 1.36088 1.37438 1.22644 0.76732 1.02075 1.01312 1.50417 1.06886 1.15192 1.52909 1.74058 0.96014 1.16934 1.16459 1.29779 0.98933 0.95689 1.00508 1.85903 1.06448 1.22138 1.66616 1.22263 0.94182 0.84924 0.82542 1.90954 1.52547 1.39715 1.50186 0.93660 0.90351 0.97287 0.95264 0.99260 0.92960 0.94502 0.91789 0.78673 0.88248 0.87552 0.74302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.06 0.56 1.30 16 2 N -0.53 -11.44 4.56 -244.36 -1.11 -12.55 16 3 C 0.19 5.03 4.55 -4.98 -0.02 5.01 16 4 C -0.51 -14.42 8.39 -34.44 -0.29 -14.71 16 5 H 0.06 1.81 7.17 -52.49 -0.38 1.43 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.03 0.49 4.66 -3.82 -0.02 0.47 16 13 C 0.10 1.64 3.30 -26.73 -0.09 1.55 16 14 H 0.11 2.17 6.78 -51.93 -0.35 1.82 16 15 O -0.54 -9.75 12.28 -35.23 -0.43 -10.18 16 16 C 0.10 1.25 5.69 -4.04 -0.02 1.23 16 17 N -0.43 -5.83 3.39 -64.88 -0.22 -6.06 16 18 N -0.22 -2.68 11.67 30.61 0.36 -2.33 16 19 C 0.07 0.61 12.87 51.60 0.66 1.27 16 20 S -0.04 -0.43 22.98 -107.50 -2.47 -2.90 16 21 C 0.48 6.89 7.78 53.89 0.42 7.31 16 22 O -0.46 -7.52 17.16 5.06 0.09 -7.44 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 25 H 0.01 0.16 8.13 -51.92 -0.42 -0.26 16 26 H 0.03 0.82 6.63 -51.93 -0.34 0.47 16 27 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.04 0.61 8.00 -51.93 -0.42 0.19 16 30 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.37 5.65 8.89 45.56 0.40 6.06 16 32 H 0.10 1.12 7.84 -51.93 -0.41 0.72 16 33 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.24 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -34.35 307.05 -5.84 -40.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.50 Total: 0.93 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 1.11 Total: 4.90 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.24 Total: -47.09 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.35 Total: -17.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.47 Total: -2.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.35 -5.84 -40.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424127613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.254 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds