Wall clock time and date at job start Mon Mar 30 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00071 * 2 1 4 4 C 1.50698 * 109.46957 * 66.04393 * 3 2 1 5 5 H 1.07998 * 120.00227 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99982 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99845 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47338 * 90.00368 * 8 6 4 10 10 H 1.48501 * 109.46977 * 210.00356 * 8 6 4 11 11 H 1.48503 * 109.46986 * 329.99771 * 8 6 4 12 12 C 1.46908 * 110.99954 * 236.04649 * 2 1 3 13 13 C 1.53008 * 109.46840 * 199.84866 * 12 2 1 14 14 H 1.08995 * 109.47200 * 300.46417 * 13 12 2 15 15 O 1.42902 * 109.47063 * 60.46356 * 13 12 2 16 16 C 1.53002 * 109.46805 * 180.46429 * 13 12 2 17 17 N 1.46495 * 109.46787 * 180.02562 * 16 13 12 18 18 N 1.37794 * 121.69287 * 270.01936 * 17 16 13 19 19 C 1.29064 * 117.34812 * 180.02562 * 18 17 16 20 20 S 1.77180 * 105.70645 * 0.02562 * 19 18 17 21 21 C 1.34407 * 121.69462 * 89.74215 * 17 16 13 22 22 O 1.21846 * 127.26311 * 359.97438 * 21 17 16 23 23 H 1.09000 * 109.47256 * 188.77567 * 1 2 3 24 24 H 1.08992 * 109.47075 * 308.77654 * 1 2 3 25 25 H 1.09007 * 109.47271 * 68.77905 * 1 2 3 26 26 H 1.09005 * 109.47508 * 186.04580 * 3 2 1 27 27 H 1.09004 * 109.47216 * 306.04449 * 3 2 1 28 28 H 0.97006 * 119.99984 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47126 * 79.85418 * 12 2 1 30 30 H 1.09000 * 109.47133 * 319.84652 * 12 2 1 31 31 H 0.96700 * 113.99993 * 59.99722 * 15 13 12 32 32 H 1.09007 * 109.46919 * 300.00212 * 16 13 12 33 33 H 1.08994 * 109.47130 * 59.99575 * 16 13 12 34 34 H 1.07997 * 127.14496 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0015 0.6154 8 14 1.5837 4.1864 3.1387 9 1 2.6606 3.9494 4.1333 10 1 1.4319 5.6462 2.9119 11 1 0.3057 3.6295 3.6503 12 6 1.9954 -0.7660 -1.1377 13 6 3.4449 -1.1666 -0.8556 14 1 4.0463 -0.2706 -0.7027 15 8 3.4946 -1.9797 0.3185 16 6 3.9969 -1.9545 -2.0454 17 7 5.3845 -2.3386 -1.7751 18 7 6.4419 -1.5295 -2.1302 19 6 7.6299 -1.9504 -1.8524 20 16 7.4100 -3.5225 -1.0654 21 6 5.6907 -3.4955 -1.1634 22 8 4.9155 -4.3470 -0.7650 23 1 -0.3634 -1.0156 0.1568 24 1 -0.3633 0.6436 0.8011 25 1 -0.3634 0.3720 -0.9580 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8310 28 1 2.9880 4.9174 0.7777 29 1 1.9566 -0.1526 -2.0378 30 1 1.3923 -1.6624 -1.2824 31 1 2.9803 -2.7961 0.2536 32 1 3.3954 -2.8506 -2.1983 33 1 3.9589 -1.3343 -2.9409 34 1 8.5641 -1.4490 -2.0580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424127613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:42 Heat of formation + Delta-G solvation = -39.996859 kcal Electronic energy + Delta-G solvation = -19119.506298 eV Core-core repulsion = 15986.680127 eV Total energy + Delta-G solvation = -3132.826171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75401 -39.28937 -38.79724 -37.13635 -34.63246 -34.07912 -31.33614 -29.40601 -28.15313 -26.28780 -25.50222 -23.79739 -21.92986 -21.81777 -20.45478 -18.75509 -18.39294 -17.78479 -17.25762 -16.78377 -16.47091 -16.23667 -16.04230 -15.73133 -15.38310 -15.04872 -14.37658 -14.31914 -14.11282 -13.97232 -13.26711 -13.13127 -12.91776 -12.66431 -12.56367 -12.44653 -12.27577 -11.77237 -11.64372 -11.43299 -11.28667 -11.16198 -10.62650 -10.48386 -9.79265 -8.97337 -8.22260 -6.31468 -0.53198 0.25769 0.40001 0.84884 1.21803 1.38713 1.40712 1.51367 2.38830 3.08417 3.13060 3.38710 3.57785 3.78497 3.95663 4.06034 4.26411 4.37688 4.46894 4.50910 4.61992 4.70584 4.75087 4.96673 5.07410 5.17992 5.27731 5.63125 5.98776 6.04656 6.31694 6.36856 6.60541 6.81957 6.84807 7.37808 8.88869 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004477 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.455679 B = 6252.126339 C = 6805.195887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.264 1.264 12 C 0.030 3.970 13 C 0.108 3.892 14 H 0.068 0.932 15 O -0.558 6.558 16 C 0.106 3.894 17 N -0.439 5.439 18 N -0.260 5.260 19 C 0.105 3.895 20 S -0.013 6.013 21 C 0.461 3.539 22 O -0.495 6.495 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.017 0.983 26 H 0.001 0.999 27 H -0.036 1.036 28 H 0.265 0.735 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.378 0.622 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -13.605 -8.772 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.269 5.269 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.791 3.209 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.189 1.189 12 C -0.100 4.100 13 C 0.047 3.953 14 H 0.086 0.914 15 O -0.364 6.364 16 C -0.019 4.019 17 N -0.262 5.262 18 N -0.074 5.074 19 C -0.214 4.214 20 S 0.217 5.783 21 C 0.140 3.860 22 O -0.374 6.374 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.019 0.981 27 H -0.019 1.019 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.226 0.774 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 9.002 -13.837 -7.867 18.286 hybrid contribution -1.300 1.082 -0.335 1.725 sum 7.701 -12.755 -8.202 17.008 Atomic orbital electron populations 1.22234 0.87171 1.01712 0.99701 1.61884 1.08121 1.15226 1.41664 1.19368 0.93561 0.83811 0.94816 1.21476 1.34847 0.97485 1.02511 0.92292 1.25880 0.95024 0.98027 1.00607 1.70073 1.39334 1.11928 1.36046 0.85421 0.78912 0.77416 0.79107 1.20167 1.20412 1.18866 1.22692 0.95642 0.99161 0.92478 1.22123 0.95675 0.92738 0.84757 0.91406 1.86632 1.74277 1.36857 1.38641 1.22500 0.77149 1.02494 0.99766 1.50487 1.07432 1.15249 1.53041 1.74097 0.96801 1.17546 1.18956 1.30903 0.99527 0.94086 0.96907 1.85822 1.03023 1.23179 1.66315 1.22767 0.95693 0.84915 0.82591 1.90919 1.54189 1.40736 1.51544 0.90191 0.92728 0.96480 0.98062 1.01887 0.92665 0.94015 0.88184 0.77368 0.86477 0.85980 0.69156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.37 127.69 1.20 2.71 16 2 N -0.54 -23.63 4.56 -927.02 -4.22 -27.86 16 3 C 0.21 11.41 4.55 85.56 0.39 11.80 16 4 C -0.52 -30.64 8.39 25.60 0.21 -30.42 16 5 H 0.06 3.42 7.17 -2.91 -0.02 3.40 16 6 C 0.00 0.15 5.46 84.66 0.46 0.61 16 7 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.03 0.98 4.66 86.30 0.40 1.38 16 13 C 0.11 3.60 3.30 30.60 0.10 3.70 16 14 H 0.07 2.84 6.78 -2.39 -0.02 2.82 16 15 O -0.56 -20.52 12.28 -148.98 -1.83 -22.34 16 16 C 0.11 2.65 5.69 86.38 0.49 3.15 16 17 N -0.44 -11.64 3.39 -477.53 -1.62 -13.26 16 18 N -0.26 -5.98 11.67 -57.06 -0.67 -6.65 16 19 C 0.11 1.51 12.87 130.65 1.68 3.19 16 20 S -0.01 -0.26 22.98 -56.49 -1.30 -1.56 16 21 C 0.46 12.92 7.78 129.85 1.01 13.93 16 22 O -0.50 -16.29 17.16 -4.82 -0.08 -16.37 16 23 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.05 2.31 6.66 -2.39 -0.02 2.29 16 25 H 0.02 0.61 8.13 -2.38 -0.02 0.59 16 26 H 0.00 0.08 6.63 -2.38 -0.02 0.06 16 27 H -0.04 -2.11 8.12 -2.38 -0.02 -2.13 16 28 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 29 H 0.04 1.36 8.00 -2.39 -0.02 1.34 16 30 H 0.10 2.61 7.94 -2.39 -0.02 2.59 16 31 H 0.38 11.57 8.89 -74.06 -0.66 10.91 16 32 H 0.12 2.49 7.84 -2.38 -0.02 2.47 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.29 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -77.01 307.05 -1.00 -78.00 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.47 Total: 9.21 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.95 Total: 10.04 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.23 Total: -104.31 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.91 Total: -38.71 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -1.30 Total: -1.56 kcal Total: -77.01 -1.00 -78.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424127613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.007 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds