Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36762 * 119.99990 * 2 1 4 4 H 1.08001 * 119.99445 * 157.17293 * 3 2 1 5 5 C 1.39129 * 120.00019 * 337.17820 * 3 2 1 6 6 N 1.31300 * 120.00009 * 347.92926 * 5 3 2 7 7 Si 1.86803 * 119.99810 * 167.93670 * 5 3 2 8 8 H 1.48497 * 109.47194 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47068 * 119.99646 * 7 5 3 10 10 H 1.48504 * 109.46798 * 239.99498 * 7 5 3 11 11 C 1.34777 * 120.00111 * 180.02562 * 2 1 3 12 12 O 1.21530 * 120.00146 * 175.90501 * 11 2 1 13 13 C 1.48301 * 119.99601 * 356.18893 * 11 2 1 14 14 N 1.30836 * 126.32340 * 8.43961 * 13 11 2 15 15 O 1.21277 * 110.32596 * 180.02562 * 14 13 11 16 16 C 1.34231 * 109.92255 * 0.02562 * 15 14 13 17 17 C 1.47845 * 126.56024 * 180.02562 * 16 15 14 18 18 C 1.39565 * 120.14195 * 179.69313 * 17 16 15 19 19 C 1.37962 * 119.85006 * 179.72246 * 18 17 16 20 20 C 1.38358 * 120.14304 * 0.57932 * 19 18 17 21 21 C 1.38349 * 120.29322 * 359.69327 * 20 19 18 22 22 C 1.37964 * 120.14320 * 0.02562 * 21 20 19 23 23 N 1.31912 * 106.88074 * 359.72739 * 16 15 14 24 24 H 1.08997 * 109.46999 * 216.03741 * 1 2 3 25 25 H 1.08998 * 109.46906 * 336.03137 * 1 2 3 26 26 H 1.08996 * 109.47383 * 96.03292 * 1 2 3 27 27 H 0.96996 * 120.00483 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.07292 * 0.02724 * 18 17 16 29 29 H 1.07998 * 119.92655 * 180.30139 * 19 18 17 30 30 H 1.08001 * 119.85160 * 179.72102 * 20 19 18 31 31 H 1.08002 * 119.93238 * 180.02562 * 21 20 19 32 32 H 1.08005 * 120.07290 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1844 0.0000 4 1 3.1654 1.2209 0.3629 5 6 1.5349 2.3421 -0.4673 6 7 0.3997 2.2646 -1.1227 7 14 2.3256 4.0069 -0.1626 8 1 3.5904 3.8231 0.5936 9 1 2.6166 4.6621 -1.4631 10 1 1.3981 4.8588 0.6244 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1685 -0.0757 13 6 1.3998 -2.4501 0.0843 14 7 0.1027 -2.6036 0.0091 15 8 -0.1896 -3.7760 0.1141 16 6 0.9218 -4.5120 0.2721 17 6 0.9902 -5.9800 0.4340 18 6 2.2257 -6.6117 0.5832 19 6 2.2822 -7.9813 0.7396 20 6 1.1184 -8.7295 0.7367 21 6 -0.1092 -8.1100 0.5836 22 6 -0.1800 -6.7406 0.4321 23 7 1.9416 -3.6757 0.2488 24 1 -0.3633 -0.8310 0.6046 25 1 -0.3633 0.9390 0.4175 26 1 -0.3634 -0.1080 -1.0219 27 1 -0.0282 3.0716 -1.4488 28 1 3.1351 -6.0293 0.5812 29 1 3.2373 -8.4709 0.8600 30 1 1.1684 -9.8019 0.8550 31 1 -1.0140 -8.6997 0.5826 32 1 -1.1389 -6.2581 0.3131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433344863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = 85.809501 kcal Electronic energy + Delta-G solvation = -19809.660131 eV Core-core repulsion = 16546.845382 eV Total energy + Delta-G solvation = -3262.814749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.09926 -39.30191 -38.45406 -35.41078 -34.68738 -33.22564 -31.79749 -31.21614 -30.13794 -26.63628 -25.61070 -24.35680 -23.86896 -22.50901 -21.85296 -19.85973 -17.87985 -17.81382 -17.01406 -16.55076 -16.29753 -15.58321 -15.03419 -14.86044 -14.19322 -14.01784 -13.91521 -13.67479 -13.21629 -12.83857 -12.46545 -12.00785 -11.75104 -11.57672 -11.40460 -11.27684 -11.20595 -10.95266 -10.62904 -10.47613 -10.37920 -10.06919 -9.22826 -9.17981 -8.84089 -8.72947 -7.89066 -6.53816 -4.05108 0.45960 1.13834 1.65678 2.36815 2.88938 3.09970 3.16455 3.23496 3.58302 3.62624 4.05087 4.12900 4.37440 4.68404 4.72534 4.81983 4.97329 5.00832 5.13073 5.26275 5.42234 5.61316 5.77883 5.90232 6.12884 6.17860 6.23117 6.30512 6.56912 6.62725 6.84164 7.18465 7.36898 7.89097 8.24177 8.49553 8.95560 9.14731 9.74456 10.48435 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.053427 B = 0.003782 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.954790 B = 7401.779881 C = 7869.342531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.404 5.404 3 C -0.302 4.302 4 H 0.108 0.892 5 C 0.034 3.966 6 N -0.861 5.861 7 Si 0.936 3.064 8 H -0.264 1.264 9 H -0.278 1.278 10 H -0.277 1.277 11 C 0.502 3.498 12 O -0.562 6.562 13 C 0.171 3.829 14 N -0.357 5.357 15 O 0.077 5.923 16 C 0.198 3.802 17 C -0.017 4.017 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.083 4.083 23 N -0.434 5.434 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.274 0.726 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -17.724 3.530 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.122 5.122 3 C -0.431 4.431 4 H 0.126 0.874 5 C -0.173 4.173 6 N -0.499 5.499 7 Si 0.762 3.238 8 H -0.188 1.188 9 H -0.203 1.203 10 H -0.203 1.203 11 C 0.287 3.713 12 O -0.445 6.445 13 C -0.102 4.102 14 N -0.068 5.068 15 O 0.016 5.984 16 C -0.020 4.020 17 C -0.020 4.020 18 C -0.085 4.085 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.103 4.103 23 N -0.167 5.167 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.033 -16.706 3.296 17.499 hybrid contribution -0.030 0.677 -0.042 0.679 sum -4.063 -16.029 3.254 16.853 Atomic orbital electron populations 1.21911 0.79867 1.01172 1.01411 1.43472 1.06491 1.03976 1.58268 1.19884 1.00252 0.82942 1.40040 0.87449 1.25539 0.96372 1.00684 0.94665 1.69993 1.17240 1.30130 1.32554 0.85701 0.79404 0.80239 0.78475 1.18775 1.20334 1.20279 1.16255 0.86462 0.80017 0.88529 1.90646 1.12231 1.84802 1.56778 1.26226 0.86575 0.96274 1.01080 1.75244 1.16779 0.94451 1.20298 1.85361 1.35004 1.13116 1.64890 1.26405 0.81147 0.95648 0.98812 1.17258 0.95187 0.83701 1.05807 1.21342 0.97007 0.94802 0.95397 1.21135 0.98986 0.93276 1.00713 1.21388 0.92529 1.00246 0.97682 1.21072 0.98263 0.94003 1.00837 1.21304 0.97519 0.94141 0.97299 1.72208 1.27925 0.98919 1.17670 0.93383 0.89925 0.92562 0.91605 0.84113 0.85017 0.85497 0.85109 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.44 7.91 59.85 0.47 2.91 16 2 N -0.40 -11.09 3.01 -123.12 -0.37 -11.46 16 3 C -0.30 -8.52 9.25 -15.02 -0.14 -8.66 16 4 H 0.11 3.10 7.45 -52.49 -0.39 2.71 16 5 C 0.03 0.88 5.06 -17.45 -0.09 0.79 16 6 N -0.86 -22.77 10.69 55.50 0.59 -22.17 16 7 Si 0.94 20.23 29.57 -169.99 -5.03 15.20 16 8 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 11 C 0.50 13.83 7.65 -12.12 -0.09 13.74 16 12 O -0.56 -17.02 16.82 5.34 0.09 -16.93 16 13 C 0.17 4.06 7.68 -156.30 -1.20 2.86 16 14 N -0.36 -7.54 8.74 31.18 0.27 -7.26 16 15 O 0.08 1.36 11.11 16.57 0.18 1.54 16 16 C 0.20 3.40 8.00 -13.81 -0.11 3.29 16 17 C -0.02 -0.23 5.87 -104.98 -0.62 -0.84 16 18 C -0.07 -0.77 9.70 -39.19 -0.38 -1.15 16 19 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 20 C -0.10 -0.74 10.04 -39.50 -0.40 -1.14 16 21 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 22 C -0.08 -0.83 9.73 -39.19 -0.38 -1.21 16 23 N -0.43 -9.26 11.27 -10.26 -0.12 -9.38 16 24 H 0.05 1.08 5.41 -51.93 -0.28 0.80 16 25 H 0.08 2.05 6.53 -51.93 -0.34 1.71 16 26 H 0.06 1.41 7.94 -51.93 -0.41 1.00 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.14 1.77 7.87 -52.49 -0.41 1.35 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.14 1.17 7.94 -52.48 -0.42 0.75 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -32.63 289.12 -6.40 -39.03 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -2.66 Total: -0.69 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.73 Total: 7.76 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.38 Total: -50.27 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.27 Total: -15.38 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.63 -6.40 -39.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433344863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.837 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds