Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36762 * 119.99990 * 2 1 4 4 H 1.08001 * 119.99445 * 157.17293 * 3 2 1 5 5 C 1.39129 * 120.00019 * 337.17820 * 3 2 1 6 6 N 1.31300 * 120.00009 * 347.92926 * 5 3 2 7 7 Si 1.86803 * 119.99810 * 167.93670 * 5 3 2 8 8 H 1.48497 * 109.47194 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47068 * 119.99646 * 7 5 3 10 10 H 1.48504 * 109.46798 * 239.99498 * 7 5 3 11 11 C 1.34777 * 120.00111 * 180.02562 * 2 1 3 12 12 O 1.21530 * 120.00146 * 175.90501 * 11 2 1 13 13 C 1.48301 * 119.99601 * 356.18893 * 11 2 1 14 14 N 1.30836 * 126.32340 * 8.43961 * 13 11 2 15 15 O 1.21277 * 110.32596 * 180.02562 * 14 13 11 16 16 C 1.34231 * 109.92255 * 0.02562 * 15 14 13 17 17 C 1.47845 * 126.56024 * 180.02562 * 16 15 14 18 18 C 1.39565 * 120.14195 * 179.69313 * 17 16 15 19 19 C 1.37962 * 119.85006 * 179.72246 * 18 17 16 20 20 C 1.38358 * 120.14304 * 0.57932 * 19 18 17 21 21 C 1.38349 * 120.29322 * 359.69327 * 20 19 18 22 22 C 1.37964 * 120.14320 * 0.02562 * 21 20 19 23 23 N 1.31912 * 106.88074 * 359.72739 * 16 15 14 24 24 H 1.08997 * 109.46999 * 216.03741 * 1 2 3 25 25 H 1.08998 * 109.46906 * 336.03137 * 1 2 3 26 26 H 1.08996 * 109.47383 * 96.03292 * 1 2 3 27 27 H 0.96996 * 120.00483 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.07292 * 0.02724 * 18 17 16 29 29 H 1.07998 * 119.92655 * 180.30139 * 19 18 17 30 30 H 1.08001 * 119.85160 * 179.72102 * 20 19 18 31 31 H 1.08002 * 119.93238 * 180.02562 * 21 20 19 32 32 H 1.08005 * 120.07290 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1844 0.0000 4 1 3.1654 1.2209 0.3629 5 6 1.5349 2.3421 -0.4673 6 7 0.3997 2.2646 -1.1227 7 14 2.3256 4.0069 -0.1626 8 1 3.5904 3.8231 0.5936 9 1 2.6166 4.6621 -1.4631 10 1 1.3981 4.8588 0.6244 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1685 -0.0757 13 6 1.3998 -2.4501 0.0843 14 7 0.1027 -2.6036 0.0091 15 8 -0.1896 -3.7760 0.1141 16 6 0.9218 -4.5120 0.2721 17 6 0.9902 -5.9800 0.4340 18 6 2.2257 -6.6117 0.5832 19 6 2.2822 -7.9813 0.7396 20 6 1.1184 -8.7295 0.7367 21 6 -0.1092 -8.1100 0.5836 22 6 -0.1800 -6.7406 0.4321 23 7 1.9416 -3.6757 0.2488 24 1 -0.3633 -0.8310 0.6046 25 1 -0.3633 0.9390 0.4175 26 1 -0.3634 -0.1080 -1.0219 27 1 -0.0282 3.0716 -1.4488 28 1 3.1351 -6.0293 0.5812 29 1 3.2373 -8.4709 0.8600 30 1 1.1684 -9.8019 0.8550 31 1 -1.0140 -8.6997 0.5826 32 1 -1.1389 -6.2581 0.3131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433344863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = 63.348155 kcal Electronic energy + Delta-G solvation = -19810.634128 eV Core-core repulsion = 16546.845382 eV Total energy + Delta-G solvation = -3263.788746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.73050 -40.54550 -40.06900 -37.20582 -36.63470 -34.68180 -33.70199 -31.95287 -31.32557 -28.64149 -27.58309 -25.75576 -25.47367 -23.49528 -23.05056 -21.48126 -19.45251 -19.36894 -18.93621 -18.26235 -17.56676 -16.98794 -16.61291 -16.18573 -15.92397 -15.80602 -14.87742 -14.79914 -14.37292 -14.18569 -14.07698 -13.98333 -13.49791 -13.14980 -12.90832 -12.70997 -12.61918 -12.49378 -12.14644 -12.07503 -12.00695 -11.60390 -11.18969 -11.01421 -10.00117 -9.94692 -9.73839 -8.56395 -6.20785 -0.63938 0.09438 0.42899 1.02262 1.37888 1.39072 1.53024 1.54714 1.89593 2.08004 2.32753 2.75609 2.81825 2.93525 3.13932 3.75697 3.98467 4.01546 4.13812 4.34693 4.47098 4.49673 4.54855 4.74851 4.85410 4.88792 5.10620 5.13998 5.26063 5.40356 5.46969 5.53339 5.80451 5.94695 6.18362 6.81148 6.91723 7.07729 7.64298 8.46446 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.053427 B = 0.003782 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.954790 B = 7401.779881 C = 7869.342531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.414 5.414 3 C -0.350 4.350 4 H 0.086 0.914 5 C 0.004 3.996 6 N -0.878 5.878 7 Si 1.009 2.991 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.258 1.258 11 C 0.488 3.512 12 O -0.606 6.606 13 C 0.146 3.854 14 N -0.358 5.358 15 O 0.101 5.899 16 C 0.227 3.773 17 C -0.055 4.055 18 C -0.081 4.081 19 C -0.123 4.123 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.078 4.078 23 N -0.472 5.472 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.285 0.715 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -20.112 3.901 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.131 5.131 3 C -0.478 4.478 4 H 0.104 0.896 5 C -0.201 4.201 6 N -0.514 5.514 7 Si 0.829 3.171 8 H -0.192 1.192 9 H -0.194 1.194 10 H -0.182 1.182 11 C 0.275 3.725 12 O -0.492 6.492 13 C -0.126 4.126 14 N -0.066 5.066 15 O 0.035 5.965 16 C 0.011 3.989 17 C -0.058 4.058 18 C -0.101 4.101 19 C -0.141 4.141 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.098 4.098 23 N -0.204 5.204 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.185 0.815 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.716 -19.078 3.660 20.249 hybrid contribution 0.385 1.085 -0.166 1.164 sum -5.331 -17.992 3.494 19.088 Atomic orbital electron populations 1.21786 0.78391 1.01513 1.00932 1.43706 1.07482 1.04004 1.57873 1.19952 1.00374 0.84362 1.43072 0.89567 1.26453 0.96686 1.03701 0.93261 1.70040 1.17790 1.31820 1.31792 0.84675 0.78500 0.75196 0.78709 1.19238 1.19403 1.18198 1.16687 0.86397 0.81278 0.88131 1.90574 1.14065 1.85946 1.58650 1.25541 0.87383 0.95737 1.03928 1.75134 1.15573 0.96108 1.19780 1.85311 1.34827 1.12090 1.64237 1.27169 0.79554 0.96916 0.95286 1.17463 0.97122 0.81182 1.10003 1.21358 0.95891 0.96315 0.96525 1.21439 1.01018 0.91800 0.99825 1.21910 0.91577 1.02085 0.94273 1.21527 0.99986 0.93009 0.98989 1.21553 0.96768 0.95211 0.96292 1.72162 1.29451 0.98626 1.20182 0.91639 0.90490 0.93626 0.90526 0.86242 0.82656 0.81632 0.81500 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.87 7.91 127.77 1.01 6.88 16 2 N -0.41 -23.84 3.01 -661.74 -1.99 -25.83 16 3 C -0.35 -20.63 9.25 84.14 0.78 -19.85 16 4 H 0.09 5.32 7.45 -2.91 -0.02 5.30 16 5 C 0.00 0.21 5.06 84.99 0.43 0.64 16 6 N -0.88 -46.66 10.69 21.69 0.23 -46.42 16 7 Si 1.01 41.60 29.57 68.60 2.03 43.63 16 8 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 9 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 11 C 0.49 28.56 7.65 86.92 0.66 29.22 16 12 O -0.61 -39.29 16.82 -3.81 -0.06 -39.36 16 13 C 0.15 7.27 7.68 137.31 1.05 8.33 16 14 N -0.36 -15.43 8.74 -57.81 -0.51 -15.94 16 15 O 0.10 3.57 11.11 69.37 0.77 4.34 16 16 C 0.23 7.89 8.00 87.30 0.70 8.59 16 17 C -0.06 -1.38 5.87 -20.09 -0.12 -1.50 16 18 C -0.08 -1.84 9.70 22.52 0.22 -1.62 16 19 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 20 C -0.08 -0.78 10.04 22.32 0.22 -0.56 16 21 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 22 C -0.08 -1.33 9.73 22.52 0.22 -1.12 16 23 N -0.47 -21.07 11.27 -302.43 -3.41 -24.48 16 24 H 0.07 3.02 5.41 -2.39 -0.01 3.01 16 25 H 0.08 3.90 6.53 -2.39 -0.02 3.88 16 26 H 0.05 2.35 7.94 -2.39 -0.02 2.34 16 27 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.12 3.16 7.87 -2.91 -0.02 3.14 16 29 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 31 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.15 2.08 7.94 -2.91 -0.02 2.06 16 Total: -1.00 -75.85 289.12 3.85 -72.00 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.17 Total: 5.62 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 5.63 Total: 26.43 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -5.67 Total: -112.67 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: 0.71 Total: -35.02 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -75.85 3.85 -72.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433344863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.347 kcal (2) G-P(sol) polarization free energy of solvation -75.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds