Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 N 1.65599 * 104.44748 * 180.02562 * 3 2 1 7 7 C 1.39214 * 120.00166 * 65.00215 * 6 3 2 8 8 C 1.36167 * 126.21666 * 359.69069 * 7 6 3 9 9 C 1.39778 * 107.80981 * 179.84948 * 8 7 6 10 10 C 1.50700 * 125.83654 * 180.16219 * 9 8 7 11 11 N 1.30836 * 108.32218 * 0.41919 * 9 8 7 12 12 N 1.35246 * 126.21712 * 180.02562 * 7 6 3 13 13 C 1.46493 * 126.04735 * 359.97438 * 12 7 6 14 14 C 1.50695 * 109.47338 * 90.00167 * 13 12 7 15 15 H 1.08002 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00155 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99963 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99857 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47282 * 90.00187 * 18 16 14 20 20 H 1.48501 * 109.46887 * 209.99956 * 18 16 14 21 21 H 1.48502 * 109.47082 * 329.99360 * 18 16 14 22 22 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 23 23 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 24 24 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 26 26 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 27 27 H 0.97001 * 120.00004 * 244.99733 * 6 3 2 28 28 H 1.07997 * 126.09875 * 359.97438 * 8 7 6 29 29 H 1.08995 * 109.47358 * 270.27722 * 10 9 8 30 30 H 1.09001 * 109.47058 * 30.27624 * 10 9 8 31 31 H 1.08998 * 109.46662 * 150.27517 * 10 9 8 32 32 H 1.09008 * 109.46973 * 210.00293 * 13 12 7 33 33 H 1.08998 * 109.47477 * 329.99847 * 13 12 7 34 34 H 0.97005 * 120.00167 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5652 -0.0007 7 6 4.4326 0.9970 -1.0937 8 6 3.8386 0.5153 -2.2204 9 6 4.8457 0.0386 -3.0643 10 6 4.6391 -0.5792 -4.4232 11 7 5.9980 0.2155 -2.4704 12 7 5.7664 0.8172 -1.2268 13 6 6.7884 1.1871 -0.2446 14 6 7.0259 0.0313 0.6928 15 1 6.4708 -0.8869 0.5694 16 6 7.9512 0.1463 1.7085 17 7 8.1581 -0.8622 2.5268 18 14 8.9098 1.7352 1.9231 19 1 8.1664 2.6427 2.8335 20 1 10.2428 1.4343 2.5042 21 1 9.0823 2.3915 0.6022 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 4.2988 1.8764 0.7604 28 1 2.7785 0.5054 -2.4262 29 1 4.5084 -1.6560 -4.3167 30 1 3.7510 -0.1494 -4.8865 31 1 5.5086 -0.3789 -5.0493 32 1 7.7165 1.4329 -0.7609 33 1 6.4491 2.0526 0.3245 34 1 8.8093 -0.7814 3.2412 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548473837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = -25.779417 kcal Electronic energy + Delta-G solvation = -19513.181573 eV Core-core repulsion = 16380.971917 eV Total energy + Delta-G solvation = -3132.209656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25319 -38.39311 -37.26173 -36.52364 -35.70879 -34.16552 -33.95286 -31.08584 -29.62535 -28.01766 -25.08615 -24.33415 -22.28148 -21.35423 -20.24909 -19.28472 -18.62538 -18.53427 -17.51275 -16.87986 -16.57786 -16.36557 -15.78984 -15.24560 -14.94930 -14.50951 -14.25589 -14.16964 -13.87940 -13.67009 -13.54234 -13.44491 -13.37715 -13.26982 -13.08315 -13.02059 -12.63768 -12.50062 -12.39824 -12.01475 -11.85015 -11.57703 -11.38136 -10.94100 -9.71389 -9.22447 -8.45273 -6.56303 -0.99457 1.03825 1.14614 1.30532 1.33089 1.42263 1.83769 1.85732 2.21511 2.58343 2.86517 3.04734 3.48730 3.72132 3.72785 3.84382 4.33449 4.38381 4.46524 4.53383 4.66047 4.69947 4.77577 4.87858 4.96190 5.12344 5.14520 5.15883 5.23344 5.46961 5.85310 5.93449 6.27980 6.47667 6.91686 7.08091 8.70478 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.007061 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.823406 B = 3964.603603 C = 4932.120791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.608 4.608 3 S 2.614 3.386 4 O -0.961 6.961 5 O -0.974 6.974 6 N -1.035 6.035 7 C 0.331 3.669 8 C -0.340 4.340 9 C 0.081 3.919 10 C -0.066 4.066 11 N -0.331 5.331 12 N -0.364 5.364 13 C 0.234 3.766 14 C -0.551 4.551 15 H 0.034 0.966 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.940 3.060 19 H -0.253 1.253 20 H -0.276 1.276 21 H -0.247 1.247 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.430 0.570 28 H 0.177 0.823 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 2.541 -7.516 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.742 4.742 3 S 2.711 3.289 4 O -0.952 6.952 5 O -0.965 6.965 6 N -0.783 5.783 7 C 0.105 3.895 8 C -0.373 4.373 9 C -0.085 4.085 10 C -0.125 4.125 11 N -0.156 5.156 12 N -0.148 5.148 13 C 0.114 3.886 14 C -0.589 4.589 15 H 0.053 0.947 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.762 3.238 19 H -0.177 1.177 20 H -0.201 1.201 21 H -0.171 1.171 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.127 0.873 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.266 0.734 28 H 0.194 0.806 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.263 3.200 -7.424 15.533 hybrid contribution 0.549 -0.060 1.264 1.379 sum -12.714 3.140 -6.160 14.473 Atomic orbital electron populations 1.21734 0.88181 1.07090 1.04370 1.30332 1.08719 1.20966 1.14228 1.05215 0.71022 0.79257 0.73436 1.93591 1.82150 1.74142 1.45267 1.93590 1.81988 1.75114 1.45807 1.53326 1.27552 1.72860 1.24553 1.17922 0.85054 0.96946 0.89568 1.21069 1.01749 1.19334 0.95122 1.22763 0.89321 0.97790 0.98641 1.20325 1.04003 1.00807 0.87318 1.77358 1.24019 1.20835 0.93343 1.48790 1.04094 1.47207 1.14743 1.19754 0.87219 0.95977 0.85659 1.21224 1.24394 0.99823 1.13469 0.94744 1.25732 0.96839 1.00530 0.94319 1.70003 1.35288 1.33423 1.18144 0.85824 0.78735 0.79042 0.80211 1.17729 1.20096 1.17101 0.90439 0.89707 0.87309 0.82771 0.83374 0.73385 0.80594 0.89151 0.87842 0.90731 0.92925 0.92220 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.92 71.98 0.71 -1.43 16 2 C -0.61 -11.50 6.55 71.98 0.47 -11.03 16 3 S 2.61 70.83 5.00 -56.49 -0.28 70.55 16 4 O -0.96 -29.74 16.35 -127.65 -2.09 -31.83 16 5 O -0.97 -31.00 18.08 -127.65 -2.31 -33.30 16 6 N -1.04 -34.05 5.77 -55.50 -0.32 -34.37 16 7 C 0.33 12.59 7.49 131.42 0.98 13.57 16 8 C -0.34 -11.26 8.55 22.16 0.19 -11.07 16 9 C 0.08 2.79 7.21 43.08 0.31 3.10 16 10 C -0.07 -1.50 10.44 71.24 0.74 -0.76 16 11 N -0.33 -14.35 12.56 -47.44 -0.60 -14.94 16 12 N -0.36 -16.24 3.60 -348.93 -1.26 -17.49 16 13 C 0.23 11.00 5.07 85.63 0.43 11.44 16 14 C -0.55 -30.57 9.94 25.60 0.25 -30.31 16 15 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 16 C 0.03 1.46 5.47 84.66 0.46 1.92 16 17 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 18 Si 0.94 40.47 27.47 68.60 1.88 42.36 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.25 -9.97 6.54 99.48 0.65 -9.32 16 22 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.15 2.66 6.30 -2.39 -0.02 2.64 16 26 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.43 14.06 8.05 -96.74 -0.78 13.28 16 28 H 0.18 4.56 5.96 -2.91 -0.02 4.55 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.49 7.20 -2.38 -0.02 2.47 16 33 H 0.06 2.52 6.92 -2.39 -0.02 2.50 16 34 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -75.88 301.98 0.19 -75.70 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.29 Total: 22.75 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.56 Total: -24.58 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -1.87 Total: -121.64 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -4.39 Total: -65.13 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.36 kcal Atomic # 16 Polarization: 70.83 SS G_CDS: -0.28 Total: 70.55 kcal Total: -75.88 0.19 -75.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548473837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.918 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds