Wall clock time and date at job start Mon Mar 30 2020 01:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99804 * 2 1 4 4 C 1.50699 * 109.46689 * 275.00181 * 3 2 1 5 5 H 1.08005 * 120.00314 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99640 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99989 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99747 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46860 * 89.99702 * 8 6 4 10 10 H 1.48503 * 109.46931 * 209.99809 * 8 6 4 11 11 H 1.48499 * 109.47064 * 329.99661 * 8 6 4 12 12 S 1.65598 * 120.00537 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40075 * 156.45871 * 12 2 1 14 14 O 1.42102 * 106.39703 * 23.54294 * 12 2 1 15 15 N 1.65593 * 107.21911 * 270.00206 * 12 2 1 16 16 C 1.46503 * 120.00018 * 65.00209 * 15 12 2 17 17 C 1.52996 * 109.47191 * 164.99972 * 16 15 12 18 18 C 1.47207 * 115.56288 * 325.68416 * 17 16 15 19 19 N 6.11823 * 113.99243 * 142.68959 * 2 1 3 20 20 C 1.53000 * 117.49997 * 179.97438 * 17 16 15 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 17 16 22 22 H 1.09002 * 109.46779 * 269.99990 * 1 2 3 23 23 H 1.09001 * 109.47451 * 29.99978 * 1 2 3 24 24 H 1.08998 * 109.46958 * 150.00134 * 1 2 3 25 25 H 1.09002 * 109.46934 * 34.99472 * 3 2 1 26 26 H 1.08996 * 109.47453 * 155.00032 * 3 2 1 27 27 H 0.97005 * 119.99861 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99875 * 244.99031 * 15 12 2 29 29 H 1.08996 * 109.47293 * 44.99201 * 16 15 12 30 30 H 1.08998 * 109.46644 * 284.99439 * 16 15 12 31 31 H 1.09002 * 117.49833 * 359.97438 * 20 17 16 32 32 H 1.09002 * 117.49953 * 144.99738 * 20 17 16 33 33 H 1.09000 * 117.49996 * 107.50493 * 21 20 17 34 34 H 1.08999 * 117.49664 * 252.51862 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6470 -0.6707 8 14 3.1794 3.5660 -3.4211 9 1 2.0191 4.4268 -3.7643 10 1 4.4330 4.3526 -3.5443 11 1 3.2284 2.4080 -4.3494 12 16 2.2931 -1.4340 0.0006 13 8 3.5760 -1.1568 -0.5439 14 8 1.4115 -2.4066 -0.5434 15 7 2.5382 -1.8579 1.5825 16 6 1.3947 -2.1768 2.4410 17 6 1.8877 -2.8833 3.7054 18 6 3.0533 -3.7646 3.5272 19 7 3.9528 -4.4458 3.3880 20 6 0.8372 -3.3009 4.7365 21 6 1.7714 -2.1252 5.0301 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6500 2.0044 0.5894 26 1 3.1857 1.1179 0.4343 27 1 3.9667 4.4807 -0.8473 28 1 3.4389 -1.8951 1.9407 29 1 0.7081 -2.8308 1.9036 30 1 0.8795 -1.2567 2.7165 31 1 -0.2050 -3.0718 4.5143 32 1 1.0088 -4.2285 5.2826 33 1 1.3436 -1.1230 5.0009 34 1 2.5577 -2.2796 5.7690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559299143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:49 Heat of formation + Delta-G solvation = -19.518631 kcal Electronic energy + Delta-G solvation = -19247.970511 eV Core-core repulsion = 16116.032343 eV Total energy + Delta-G solvation = -3131.938168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15549 -36.64063 -35.80207 -35.51913 -35.18951 -34.26059 -32.44465 -27.80185 -26.78180 -25.07475 -23.46037 -22.92663 -22.30252 -18.97957 -17.94077 -17.31624 -16.71109 -16.36937 -15.77314 -15.28827 -14.66709 -14.58265 -14.18932 -13.97371 -13.49559 -13.31317 -13.25470 -13.00069 -12.35838 -12.24132 -12.15827 -11.94434 -11.70392 -11.63451 -11.45114 -11.18108 -11.08221 -10.81076 -10.72153 -10.58650 -10.49688 -10.04034 -9.78330 -9.41286 -8.45547 -8.10461 -6.07567 -4.11440 1.16401 2.29782 2.53244 3.31212 3.37935 3.38423 3.44430 3.50305 3.60505 4.06613 4.11218 4.42670 4.44468 4.55572 4.99469 5.12954 5.20797 5.27955 5.38496 5.40326 5.47047 5.60862 5.65743 5.84592 5.95267 6.26266 6.53216 6.98495 7.22176 7.37034 7.38808 7.58362 7.90013 8.19042 8.90990 9.54004 11.01056 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.004976 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.715537 B = 5625.324682 C = 5716.465921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.782 3.218 13 O -0.960 6.960 14 O -0.996 6.996 15 N -1.137 6.137 16 C 0.166 3.834 17 C -0.061 4.061 18 C 0.242 3.758 19 N -0.423 5.423 20 C -0.140 4.140 21 C -0.142 4.142 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.412 0.588 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -9.126 12.669 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.944 6.944 14 O -0.979 6.979 15 N -0.895 5.895 16 C 0.038 3.962 17 C -0.066 4.066 18 C -0.076 4.076 19 N -0.098 5.098 20 C -0.179 4.179 21 C -0.180 4.180 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.245 0.755 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.193 -10.484 11.637 17.236 hybrid contribution 0.195 0.945 -0.422 1.053 sum -6.998 -9.539 11.215 16.302 Atomic orbital electron populations 1.21390 0.80136 1.03648 1.00176 1.57605 1.14301 1.23263 1.88620 1.19067 0.91049 0.78667 0.97711 1.21499 1.36140 1.06313 0.92963 0.92160 1.24927 0.95053 0.96522 0.97483 1.69915 1.37339 1.15301 1.30954 0.86513 0.77529 0.78840 0.84685 1.20597 1.21062 1.19703 1.01971 0.73462 0.72979 0.72693 1.93653 1.40654 1.84793 1.75311 1.93525 1.67593 1.60148 1.76661 1.56344 1.14296 1.86397 1.32479 1.20776 0.88213 0.99118 0.88125 1.18623 0.93326 1.00661 0.94018 1.27594 0.93307 0.93220 0.93445 1.81314 1.10780 1.10056 1.07609 1.23231 0.96294 1.00053 0.98310 1.23366 1.02211 0.98048 0.94413 0.94253 0.90307 0.91519 0.94597 0.94406 0.92684 0.75466 0.89179 0.89670 0.86265 0.87591 0.86173 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.68 59.85 0.64 2.09 16 2 N -0.99 -19.50 3.23 -123.05 -0.40 -19.90 16 3 C 0.26 6.23 5.08 -5.19 -0.03 6.20 16 4 C -0.53 -14.68 9.38 -34.44 -0.32 -15.00 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.78 53.72 6.10 -107.50 -0.66 53.06 16 13 O -0.96 -23.11 17.11 -57.17 -0.98 -24.09 16 14 O -1.00 -20.08 16.21 -57.17 -0.93 -21.00 16 15 N -1.14 -16.30 5.67 -10.61 -0.06 -16.36 16 16 C 0.17 1.68 6.37 -4.04 -0.03 1.65 16 17 C -0.06 -0.52 2.41 -157.26 -0.38 -0.90 16 18 C 0.24 2.92 13.70 -20.73 -0.28 2.64 16 19 N -0.42 -6.28 18.54 42.19 0.78 -5.50 16 20 C -0.14 -0.71 9.93 -26.73 -0.27 -0.97 16 21 C -0.14 -0.81 9.86 -26.69 -0.26 -1.07 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 24 H 0.07 0.99 7.02 -51.93 -0.36 0.62 16 25 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 26 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.41 5.78 7.76 -34.46 -0.27 5.51 16 29 H 0.09 0.88 7.75 -51.93 -0.40 0.47 16 30 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 31 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.12 0.54 8.05 -51.93 -0.42 0.12 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -35.64 314.83 -7.13 -42.77 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.33 Total: -1.60 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.02 Total: -3.71 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: 1.06 Total: -66.88 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.91 Total: -45.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.66 Total: 53.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.64 -7.13 -42.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559299143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.253 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds