Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47165 * 239.99720 * 2 1 3 5 5 H 1.07992 * 119.99868 * 245.45800 * 4 2 1 6 6 C 1.37875 * 119.99805 * 65.45370 * 4 2 1 7 7 N 1.31519 * 120.00274 * 9.62278 * 6 4 2 8 8 Si 1.86798 * 119.99892 * 189.61589 * 6 4 2 9 9 H 1.48505 * 109.46748 * 85.00045 * 8 6 4 10 10 H 1.48502 * 109.47193 * 204.99479 * 8 6 4 11 11 H 1.48497 * 109.47476 * 324.99949 * 8 6 4 12 12 N 1.46504 * 109.47130 * 119.99877 * 2 1 3 13 13 C 1.46498 * 120.00141 * 59.99645 * 12 2 1 14 14 S 1.65603 * 119.99726 * 240.00009 * 12 2 1 15 15 O 1.42102 * 106.39787 * 203.53723 * 14 12 2 16 16 O 1.42093 * 106.40496 * 336.45813 * 14 12 2 17 17 C 1.76198 * 107.21706 * 90.00336 * 14 12 2 18 18 C 1.39871 * 125.89443 * 209.71378 * 17 14 12 19 19 C 1.35325 * 107.92079 * 179.86176 * 18 17 14 20 20 N 1.34951 * 107.74201 * 0.39525 * 19 18 17 21 21 C 1.46495 * 126.03776 * 179.75235 * 20 19 18 22 22 N 1.30841 * 125.90290 * 30.01507 * 17 14 12 23 23 H 1.09002 * 109.47127 * 183.31339 * 1 2 3 24 24 H 1.09004 * 109.47040 * 303.31008 * 1 2 3 25 25 H 1.09001 * 109.47134 * 63.30854 * 1 2 3 26 26 H 0.96993 * 120.00211 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47514 * 270.00082 * 13 12 2 28 28 H 1.09001 * 109.46960 * 30.00232 * 13 12 2 29 29 H 1.08999 * 109.47073 * 149.99630 * 13 12 2 30 30 H 1.07997 * 126.04604 * 359.97438 * 18 17 14 31 31 H 1.08000 * 126.13028 * 180.14837 * 19 18 17 32 32 H 1.08999 * 109.47279 * 269.97338 * 21 20 19 33 33 H 1.09009 * 109.47216 * 29.97351 * 21 20 19 34 34 H 1.09005 * 109.47518 * 149.97080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7945 -0.1775 -2.4796 7 7 1.3002 1.0359 -2.5936 8 14 2.1744 -1.1789 -4.0100 9 1 1.0214 -2.0609 -4.3232 10 1 2.4213 -0.2627 -5.1523 11 1 3.3822 -2.0091 -3.7712 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.7118 -0.8788 2.9815 16 8 3.5794 1.1830 1.5748 17 6 1.8961 0.8536 3.4711 18 6 2.1445 2.0337 4.1795 19 6 1.0825 2.2673 4.9850 20 7 0.1974 1.2656 4.7994 21 6 -1.0931 1.1192 5.4770 22 7 0.7306 0.3905 3.8442 23 1 -0.3633 -1.0260 0.0594 24 1 -0.3633 0.5644 0.8589 25 1 -0.3633 0.4616 -0.9182 26 1 1.1332 1.4110 -3.4724 27 1 0.7376 -2.1443 1.9995 28 1 1.5295 -2.5968 0.4710 29 1 2.4629 -2.5818 1.9864 30 1 3.0271 2.6507 4.0969 31 1 0.9660 3.1033 5.6588 32 1 -0.9594 0.5430 6.3926 33 1 -1.4885 2.1049 5.7225 34 1 -1.7917 0.6008 4.8202 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569335053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = 12.642936 kcal Electronic energy + Delta-G solvation = -19793.035671 eV Core-core repulsion = 16662.492133 eV Total energy + Delta-G solvation = -3130.543538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13945 -36.58693 -36.10407 -35.22266 -33.42463 -32.50090 -30.25902 -29.12719 -27.11281 -25.45631 -25.09288 -22.02113 -21.37378 -20.57846 -18.14810 -17.49539 -16.76821 -16.33488 -15.72165 -15.67001 -15.16218 -14.47663 -13.99561 -13.65964 -13.38477 -13.06788 -12.95270 -12.71743 -12.58716 -11.97777 -11.75209 -11.48416 -11.40022 -11.20300 -11.11643 -10.89706 -10.84449 -10.74169 -10.39503 -10.23651 -9.97181 -9.70014 -9.25762 -8.74678 -8.37231 -7.93486 -6.04361 -4.07404 0.98780 1.62638 2.39653 2.46079 3.32955 3.39410 3.42505 3.60500 4.27320 4.42726 4.46039 4.69441 4.91467 5.13326 5.18893 5.28422 5.39201 5.59072 5.71416 5.83793 6.25381 6.29914 6.43606 6.71170 6.82357 6.83017 6.86630 7.05831 7.33173 7.42925 7.67716 7.81554 8.00503 8.30696 8.94242 9.56206 11.03724 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.006109 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.896108 B = 4582.587466 C = 4871.485464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.265 3.735 3 H 0.067 0.933 4 C -0.522 4.522 5 H 0.066 0.934 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.968 5.968 13 C 0.095 3.905 14 S 2.708 3.292 15 O -0.966 6.966 16 O -0.938 6.938 17 C -0.470 4.470 18 C -0.199 4.199 19 C 0.044 3.956 20 N -0.365 5.365 21 C 0.096 3.904 22 N -0.190 5.190 23 H 0.036 0.964 24 H 0.014 0.986 25 H 0.074 0.926 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 1.220 14.911 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.085 0.915 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.809 5.809 13 C -0.051 4.051 14 S 2.790 3.210 15 O -0.955 6.955 16 O -0.927 6.927 17 C -0.715 4.715 18 C -0.229 4.229 19 C -0.101 4.101 20 N -0.150 5.150 21 C -0.046 4.046 22 N -0.015 5.015 23 H 0.055 0.945 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.199 0.801 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.024 0.522 14.764 15.604 hybrid contribution -0.168 0.533 -0.298 0.633 sum -5.192 1.055 14.467 15.406 Atomic orbital electron populations 1.22014 0.98573 0.99288 1.00019 1.18823 0.90996 0.93737 0.80210 0.91491 1.21283 1.36278 1.08670 0.89941 0.91627 1.24919 0.95163 0.94658 0.98977 1.69961 1.44619 1.13770 1.24105 0.86547 0.78743 0.79992 0.82348 1.20579 1.21275 1.19805 1.57230 1.70186 1.19574 1.33945 1.21377 0.99316 0.81688 1.02703 1.01938 0.73475 0.73324 0.72252 1.93529 1.68177 1.58635 1.75189 1.93613 1.72660 1.56360 1.70069 1.35785 1.08554 1.08372 1.18763 1.21159 1.02165 0.98399 1.01224 1.22579 0.90891 0.94719 1.01955 1.48999 1.16284 1.18285 1.31463 1.21964 0.81281 1.03921 0.97408 1.77375 1.08312 1.13334 1.02518 0.94489 0.96738 0.90757 0.92684 0.93962 0.89586 0.91714 0.82196 0.80107 0.90380 0.89211 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.12 37.16 0.34 -2.91 16 2 C 0.27 6.67 2.49 -69.08 -0.17 6.50 16 3 H 0.07 1.88 6.86 -51.93 -0.36 1.52 16 4 C -0.52 -14.14 8.01 -34.44 -0.28 -14.41 16 5 H 0.07 1.74 7.16 -52.49 -0.38 1.36 16 6 C 0.07 1.80 5.17 -17.82 -0.09 1.71 16 7 N -0.89 -25.25 12.17 55.43 0.67 -24.58 16 8 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.97 -21.22 3.06 -115.85 -0.35 -21.57 16 13 C 0.10 1.78 9.58 59.85 0.57 2.36 16 14 S 2.71 57.47 5.83 -107.50 -0.63 56.84 16 15 O -0.97 -21.17 16.62 -57.17 -0.95 -22.12 16 16 O -0.94 -22.46 16.54 -57.17 -0.95 -23.40 16 17 C -0.47 -8.80 7.20 -17.36 -0.13 -8.92 16 18 C -0.20 -3.13 10.71 -40.01 -0.43 -3.56 16 19 C 0.04 0.54 11.49 -17.22 -0.20 0.34 16 20 N -0.37 -4.94 4.01 -68.16 -0.27 -5.21 16 21 C 0.10 0.76 11.47 59.84 0.69 1.44 16 22 N -0.19 -3.36 12.58 31.27 0.39 -2.97 16 23 H 0.04 0.80 7.56 -51.93 -0.39 0.40 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 1.88 6.84 -51.93 -0.36 1.52 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.61 6.92 -51.93 -0.36 1.25 16 29 H 0.06 1.13 7.02 -51.93 -0.36 0.77 16 30 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -34.86 304.41 -6.51 -41.37 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.30 Total: -1.60 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 0.31 Total: -17.44 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.44 Total: -54.32 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.90 Total: -45.52 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 57.47 SS G_CDS: -0.63 Total: 56.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.86 -6.51 -41.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569335053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.015 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds