Wall clock time and date at job start Mon Mar 30 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47165 * 239.99720 * 2 1 3 5 5 H 1.07992 * 119.99868 * 245.45800 * 4 2 1 6 6 C 1.37875 * 119.99805 * 65.45370 * 4 2 1 7 7 N 1.31519 * 120.00274 * 9.62278 * 6 4 2 8 8 Si 1.86798 * 119.99892 * 189.61589 * 6 4 2 9 9 H 1.48505 * 109.46748 * 85.00045 * 8 6 4 10 10 H 1.48502 * 109.47193 * 204.99479 * 8 6 4 11 11 H 1.48497 * 109.47476 * 324.99949 * 8 6 4 12 12 N 1.46504 * 109.47130 * 119.99877 * 2 1 3 13 13 C 1.46498 * 120.00141 * 59.99645 * 12 2 1 14 14 S 1.65603 * 119.99726 * 240.00009 * 12 2 1 15 15 O 1.42102 * 106.39787 * 203.53723 * 14 12 2 16 16 O 1.42093 * 106.40496 * 336.45813 * 14 12 2 17 17 C 1.76198 * 107.21706 * 90.00336 * 14 12 2 18 18 C 1.39871 * 125.89443 * 209.71378 * 17 14 12 19 19 C 1.35325 * 107.92079 * 179.86176 * 18 17 14 20 20 N 1.34951 * 107.74201 * 0.39525 * 19 18 17 21 21 C 1.46495 * 126.03776 * 179.75235 * 20 19 18 22 22 N 1.30841 * 125.90290 * 30.01507 * 17 14 12 23 23 H 1.09002 * 109.47127 * 183.31339 * 1 2 3 24 24 H 1.09004 * 109.47040 * 303.31008 * 1 2 3 25 25 H 1.09001 * 109.47134 * 63.30854 * 1 2 3 26 26 H 0.96993 * 120.00211 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47514 * 270.00082 * 13 12 2 28 28 H 1.09001 * 109.46960 * 30.00232 * 13 12 2 29 29 H 1.08999 * 109.47073 * 149.99630 * 13 12 2 30 30 H 1.07997 * 126.04604 * 359.97438 * 18 17 14 31 31 H 1.08000 * 126.13028 * 180.14837 * 19 18 17 32 32 H 1.08999 * 109.47279 * 269.97338 * 21 20 19 33 33 H 1.09009 * 109.47216 * 29.97351 * 21 20 19 34 34 H 1.09005 * 109.47518 * 149.97080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7945 -0.1775 -2.4796 7 7 1.3002 1.0359 -2.5936 8 14 2.1744 -1.1789 -4.0100 9 1 1.0214 -2.0609 -4.3232 10 1 2.4213 -0.2627 -5.1523 11 1 3.3822 -2.0091 -3.7712 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.7118 -0.8788 2.9815 16 8 3.5794 1.1830 1.5748 17 6 1.8961 0.8536 3.4711 18 6 2.1445 2.0337 4.1795 19 6 1.0825 2.2673 4.9850 20 7 0.1974 1.2656 4.7994 21 6 -1.0931 1.1192 5.4770 22 7 0.7306 0.3905 3.8442 23 1 -0.3633 -1.0260 0.0594 24 1 -0.3633 0.5644 0.8589 25 1 -0.3633 0.4616 -0.9182 26 1 1.1332 1.4110 -3.4724 27 1 0.7376 -2.1443 1.9995 28 1 1.5295 -2.5968 0.4710 29 1 2.4629 -2.5818 1.9864 30 1 3.0271 2.6507 4.0969 31 1 0.9660 3.1033 5.6588 32 1 -0.9594 0.5430 6.3926 33 1 -1.4885 2.1049 5.7225 34 1 -1.7917 0.6008 4.8202 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569335053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:52 Heat of formation + Delta-G solvation = -14.248253 kcal Electronic energy + Delta-G solvation = -19794.201761 eV Core-core repulsion = 16662.492133 eV Total energy + Delta-G solvation = -3131.709627 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25170 -38.33940 -37.91642 -36.97839 -34.50569 -34.40112 -31.38433 -31.00370 -28.02606 -27.20629 -27.04033 -23.35670 -22.60338 -22.20366 -19.72126 -18.79436 -18.59171 -18.10513 -17.20502 -17.02362 -16.57965 -16.26251 -15.28513 -14.97454 -14.82712 -14.62400 -14.30989 -13.85393 -13.74973 -13.47870 -13.46018 -13.29537 -13.21944 -12.93153 -12.70740 -12.63989 -12.61129 -12.29342 -12.18127 -12.02477 -11.85619 -11.22036 -10.80042 -10.46183 -9.85008 -9.69559 -8.12290 -6.22633 -0.63068 0.43951 1.26884 1.46497 1.47380 1.49057 1.57479 2.05078 2.47103 2.68551 3.17836 3.40635 3.68501 3.95046 4.14330 4.40115 4.44648 4.56177 4.62871 4.67656 4.73268 4.79546 4.94649 4.98668 5.10168 5.13133 5.23130 5.56042 5.65933 5.84528 5.96479 6.05488 6.17617 6.27031 6.84838 7.44770 8.95526 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.006109 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.896108 B = 4582.587466 C = 4871.485464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.271 3.729 3 H 0.030 0.970 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.978 5.978 13 C 0.092 3.908 14 S 2.724 3.276 15 O -0.982 6.982 16 O -0.978 6.978 17 C -0.497 4.497 18 C -0.233 4.233 19 C 0.071 3.929 20 N -0.356 5.356 21 C 0.081 3.919 22 N -0.222 5.222 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.265 0.735 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.240 0.760 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 1.225 16.637 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.579 4.579 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.819 5.819 13 C -0.053 4.053 14 S 2.811 3.189 15 O -0.971 6.971 16 O -0.967 6.967 17 C -0.744 4.744 18 C -0.264 4.264 19 C -0.075 4.075 20 N -0.141 5.141 21 C -0.058 4.058 22 N -0.051 5.051 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.187 0.813 31 H 0.257 0.743 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.466 0.468 16.462 17.693 hybrid contribution 0.191 0.602 -0.622 0.887 sum -6.274 1.070 15.840 17.071 Atomic orbital electron populations 1.21800 0.97190 1.00082 0.99262 1.18494 0.91904 0.91936 0.80989 0.95265 1.21613 1.36339 1.08806 0.91093 0.91649 1.25712 0.95082 0.95527 1.01921 1.70080 1.45644 1.15148 1.24792 0.85549 0.78856 0.78551 0.78548 1.19304 1.21184 1.19526 1.57082 1.70217 1.20854 1.33717 1.21539 1.00684 0.80086 1.03028 1.00928 0.73367 0.72512 0.72126 1.93495 1.69185 1.59184 1.75256 1.93556 1.74294 1.57429 1.71466 1.34982 1.09405 1.10274 1.19779 1.21589 1.04304 0.98114 1.02403 1.23407 0.88708 0.94883 1.00542 1.49482 1.17568 1.17294 1.29798 1.22497 0.78851 1.06831 0.97579 1.77271 1.08094 1.15154 1.04545 0.93010 0.95597 0.93017 0.92598 0.91894 0.89822 0.90767 0.81253 0.74341 0.88183 0.85256 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 9.12 71.98 0.66 -5.17 16 2 C 0.27 14.00 2.49 44.24 0.11 14.11 16 3 H 0.03 1.73 6.86 -2.39 -0.02 1.72 16 4 C -0.54 -29.72 8.01 25.60 0.20 -29.52 16 5 H 0.07 3.51 7.16 -2.91 -0.02 3.49 16 6 C 0.02 0.98 5.17 84.65 0.44 1.41 16 7 N -0.92 -53.39 12.17 21.45 0.26 -53.13 16 8 Si 0.96 43.56 29.55 68.60 2.03 45.58 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.98 -43.71 3.06 -520.44 -1.59 -45.30 16 13 C 0.09 3.42 9.58 127.77 1.22 4.64 16 14 S 2.72 119.12 5.83 -56.49 -0.33 118.79 16 15 O -0.98 -43.98 16.62 -128.00 -2.13 -46.10 16 16 O -0.98 -49.21 16.54 -128.00 -2.12 -51.33 16 17 C -0.50 -18.58 7.20 85.24 0.61 -17.97 16 18 C -0.23 -7.04 10.71 21.99 0.24 -6.80 16 19 C 0.07 1.49 11.49 83.54 0.96 2.45 16 20 N -0.36 -8.47 4.01 -369.55 -1.48 -9.95 16 21 C 0.08 0.94 11.47 127.77 1.47 2.41 16 22 N -0.22 -7.61 12.58 -54.97 -0.69 -8.30 16 23 H 0.05 2.22 7.56 -2.39 -0.02 2.20 16 24 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 2.65 6.84 -2.39 -0.02 2.63 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 3.12 6.92 -2.39 -0.02 3.11 16 29 H 0.07 2.59 7.02 -2.39 -0.02 2.58 16 30 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 31 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -77.98 304.41 0.96 -77.03 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.10 Total: 7.14 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 5.91 Total: -34.43 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.51 Total: -116.69 kcal Atomic # 8 Polarization: -93.19 SS G_CDS: -4.24 Total: -97.43 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 119.12 SS G_CDS: -0.33 Total: 118.79 kcal Total: -77.98 0.96 -77.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569335053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -77.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds