Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 C 1.76202 * 107.22092 * 90.00378 * 14 12 2 18 18 C 1.39870 * 125.89551 * 269.71775 * 17 14 12 19 19 C 1.35323 * 107.91952 * 179.85988 * 18 17 14 20 20 N 1.34953 * 107.74383 * 0.39652 * 19 18 17 21 21 C 1.46489 * 126.03923 * 179.75258 * 20 19 18 22 22 N 1.30830 * 125.89831 * 90.02209 * 17 14 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.07996 * 126.04413 * 359.97438 * 18 17 14 31 31 H 1.07992 * 126.13064 * 180.14926 * 19 18 17 32 32 H 1.09004 * 109.47212 * 269.97384 * 21 20 19 33 33 H 1.09002 * 109.47161 * 29.97197 * 21 20 19 34 34 H 1.08996 * 109.47860 * 149.97343 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 6 4.6445 -0.1183 -1.7881 18 6 5.3654 0.7113 -0.9229 19 6 6.6088 0.1942 -0.7900 20 7 6.6752 -0.9182 -1.5513 21 6 7.8433 -1.7886 -1.7054 22 7 5.4295 -1.0935 -2.1679 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 4.9946 1.6054 -0.4440 31 1 7.4065 0.6011 -0.1864 32 1 8.4485 -1.4397 -2.5422 33 1 8.4377 -1.7642 -0.7921 34 1 7.5131 -2.8096 -1.8968 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569335054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = 12.468147 kcal Electronic energy + Delta-G solvation = -19893.119336 eV Core-core repulsion = 16762.568219 eV Total energy + Delta-G solvation = -3130.551117 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00803 -36.63397 -36.13192 -35.23580 -33.32114 -32.59179 -30.09827 -29.05897 -27.01628 -25.47704 -25.16290 -21.89255 -21.16464 -20.67042 -18.13920 -17.37508 -16.78590 -16.40717 -15.74482 -15.47083 -15.22686 -14.55254 -13.83788 -13.54913 -13.34979 -13.08092 -12.91013 -12.63481 -12.58014 -11.96220 -11.75296 -11.49577 -11.33956 -11.18377 -11.16428 -10.94161 -10.88345 -10.70991 -10.40540 -10.18711 -10.06338 -9.62235 -9.24978 -8.58039 -8.47251 -7.96020 -6.08741 -4.16514 0.97669 1.71031 2.52157 2.60893 3.23733 3.31266 3.33573 3.74490 4.32205 4.36049 4.45673 4.79078 4.97588 5.06001 5.21887 5.22386 5.57115 5.71283 5.80145 5.96037 6.23842 6.38552 6.48925 6.70243 6.89602 6.91819 6.99945 7.12940 7.42568 7.50524 7.63768 7.79580 8.06007 8.26706 8.86206 9.49317 10.96380 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.008386 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.267936 B = 3337.941325 C = 4319.557608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.264 3.736 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.972 5.972 13 C 0.104 3.896 14 S 2.712 3.288 15 O -0.964 6.964 16 O -0.947 6.947 17 C -0.471 4.471 18 C -0.179 4.179 19 C 0.038 3.962 20 N -0.365 5.365 21 C 0.096 3.904 22 N -0.196 5.196 23 H 0.015 0.985 24 H 0.094 0.906 25 H 0.033 0.967 26 H 0.264 0.736 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -3.500 -4.977 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.814 5.814 13 C -0.042 4.042 14 S 2.795 3.205 15 O -0.954 6.954 16 O -0.937 6.937 17 C -0.716 4.716 18 C -0.209 4.209 19 C -0.107 4.107 20 N -0.151 5.151 21 C -0.045 4.045 22 N -0.022 5.022 23 H 0.034 0.966 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.183 0.817 31 H 0.198 0.802 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.372 -4.045 -6.251 12.767 hybrid contribution 1.100 -0.066 2.052 2.329 sum 11.472 -4.111 -4.199 12.889 Atomic orbital electron populations 1.22050 0.97516 0.99840 1.00943 1.18841 0.92086 0.92935 0.79974 0.91922 1.21381 1.31751 1.13119 0.90210 0.92015 1.24889 0.94954 0.94988 0.98856 1.69874 1.36167 1.22613 1.23784 0.86558 0.78580 0.79956 0.82628 1.20742 1.21125 1.20023 1.57428 1.61877 1.21883 1.40193 1.21273 0.99345 0.81546 1.02082 1.01722 0.71939 0.73700 0.73156 1.93523 1.85384 1.75560 1.40896 1.93579 1.82759 1.30962 1.86355 1.35535 1.24209 1.01478 1.10396 1.21261 0.92953 1.03444 1.03231 1.22595 1.00017 0.89718 0.98340 1.48977 1.10764 1.20617 1.34751 1.21932 0.84349 0.94905 1.03308 1.77326 0.89352 1.19706 1.15812 0.96600 0.88771 0.94751 0.92626 0.93331 0.92699 0.90099 0.81741 0.80194 0.90493 0.89222 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.47 2.62 -69.08 -0.18 6.29 16 3 H 0.06 1.66 6.91 -51.93 -0.36 1.31 16 4 C -0.53 -13.57 7.99 -34.44 -0.28 -13.85 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.97 -20.96 3.06 -115.85 -0.35 -21.31 16 13 C 0.10 1.94 9.29 59.85 0.56 2.50 16 14 S 2.71 57.22 5.80 -107.50 -0.62 56.60 16 15 O -0.96 -21.13 17.09 -57.17 -0.98 -22.11 16 16 O -0.95 -21.74 16.43 -57.17 -0.94 -22.68 16 17 C -0.47 -9.30 7.25 -17.37 -0.13 -9.43 16 18 C -0.18 -3.18 10.58 -40.01 -0.42 -3.61 16 19 C 0.04 0.54 11.49 -17.22 -0.20 0.34 16 20 N -0.37 -5.37 4.01 -68.17 -0.27 -5.65 16 21 C 0.10 0.85 11.47 59.84 0.69 1.53 16 22 N -0.20 -3.67 12.58 31.27 0.39 -3.28 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.03 0.75 7.67 -51.93 -0.40 0.36 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.94 7.79 -51.93 -0.40 0.54 16 29 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 30 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 31 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -33.17 304.04 -6.63 -39.80 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.32 Total: -0.23 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 0.28 Total: -17.64 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.39 Total: -53.70 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.92 Total: -44.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 57.22 SS G_CDS: -0.62 Total: 56.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.17 -6.63 -39.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569335054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.266 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds