Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 C 1.76202 * 107.22092 * 90.00378 * 14 12 2 18 18 C 1.39870 * 125.89551 * 269.71775 * 17 14 12 19 19 C 1.35323 * 107.91952 * 179.85988 * 18 17 14 20 20 N 1.34953 * 107.74383 * 0.39652 * 19 18 17 21 21 C 1.46489 * 126.03923 * 179.75258 * 20 19 18 22 22 N 1.30830 * 125.89831 * 90.02209 * 17 14 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.07996 * 126.04413 * 359.97438 * 18 17 14 31 31 H 1.07992 * 126.13064 * 180.14926 * 19 18 17 32 32 H 1.09004 * 109.47212 * 269.97384 * 21 20 19 33 33 H 1.09002 * 109.47161 * 29.97197 * 21 20 19 34 34 H 1.08996 * 109.47860 * 149.97343 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 6 4.6445 -0.1183 -1.7881 18 6 5.3654 0.7113 -0.9229 19 6 6.6088 0.1942 -0.7900 20 7 6.6752 -0.9182 -1.5513 21 6 7.8433 -1.7886 -1.7054 22 7 5.4295 -1.0935 -2.1679 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 4.9946 1.6054 -0.4440 31 1 7.4065 0.6011 -0.1864 32 1 8.4485 -1.4397 -2.5422 33 1 8.4377 -1.7642 -0.7921 34 1 7.5131 -2.8096 -1.8968 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569335054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = -12.381672 kcal Electronic energy + Delta-G solvation = -19894.196905 eV Core-core repulsion = 16762.568219 eV Total energy + Delta-G solvation = -3131.628686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23778 -38.36409 -37.91480 -36.96646 -34.51584 -34.39837 -31.33539 -30.92009 -28.02364 -27.22381 -27.03465 -23.26411 -22.52924 -22.29695 -19.71782 -18.77522 -18.44819 -18.31384 -17.12501 -17.00892 -16.53024 -16.35318 -15.25733 -14.94203 -14.87321 -14.52880 -14.37075 -13.81771 -13.69604 -13.48109 -13.42213 -13.25125 -13.16008 -12.97777 -12.73801 -12.69832 -12.64549 -12.18930 -12.11802 -12.05630 -11.88707 -11.18571 -10.79016 -10.47522 -9.83549 -9.69195 -8.07468 -6.21883 -0.63706 0.39971 1.26923 1.44633 1.46669 1.54290 1.56160 2.14581 2.46974 2.72341 3.16491 3.20674 3.76508 3.95625 4.10366 4.39135 4.46483 4.60035 4.66092 4.67144 4.72079 4.80111 5.01057 5.03462 5.15410 5.18718 5.24232 5.62283 5.69972 5.85467 5.96544 6.11038 6.18826 6.30063 6.85433 7.46919 8.97241 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.008386 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.267936 B = 3337.941325 C = 4319.557608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.034 0.966 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.979 5.979 13 C 0.098 3.902 14 S 2.726 3.274 15 O -0.978 6.978 16 O -0.976 6.976 17 C -0.496 4.496 18 C -0.218 4.218 19 C 0.064 3.936 20 N -0.354 5.354 21 C 0.081 3.919 22 N -0.227 5.227 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.265 0.735 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.235 0.765 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.804 -4.830 -4.270 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.052 0.948 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.820 5.820 13 C -0.047 4.047 14 S 2.812 3.188 15 O -0.968 6.968 16 O -0.966 6.966 17 C -0.742 4.742 18 C -0.249 4.249 19 C -0.082 4.082 20 N -0.139 5.139 21 C -0.058 4.058 22 N -0.056 5.056 23 H 0.043 0.957 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.176 0.824 31 H 0.251 0.749 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.706 -5.400 -5.579 14.890 hybrid contribution 0.538 0.315 1.793 1.898 sum 13.244 -5.085 -3.786 14.683 Atomic orbital electron populations 1.21942 0.97135 1.00339 1.00375 1.18564 0.92394 0.91729 0.80821 0.94834 1.21557 1.31625 1.13025 0.90874 0.92108 1.25609 0.95142 0.95610 1.01533 1.69998 1.37112 1.23793 1.24393 0.85598 0.78048 0.79018 0.79169 1.20249 1.20979 1.19448 1.57309 1.62698 1.22840 1.39144 1.21455 1.00682 0.80120 1.02460 1.00917 0.72330 0.72815 0.72692 1.93490 1.86093 1.75608 1.41580 1.93533 1.83734 1.32638 1.86684 1.34953 1.23661 1.03185 1.12379 1.21508 0.94823 1.04137 1.04419 1.23322 0.99694 0.88381 0.96820 1.49461 1.10619 1.20923 1.32931 1.22502 0.82748 0.94188 1.06335 1.77230 0.91177 1.19902 1.17263 0.95658 0.90818 0.93619 0.92583 0.91741 0.91321 0.90258 0.82360 0.74887 0.88178 0.85429 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.97 16 2 C 0.27 13.43 2.62 44.25 0.12 13.54 16 3 H 0.03 1.87 6.91 -2.39 -0.02 1.85 16 4 C -0.53 -27.57 7.99 25.60 0.20 -27.36 16 5 H 0.06 3.10 7.33 -2.91 -0.02 3.08 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -50.27 11.32 21.45 0.24 -50.02 16 8 Si 0.96 41.37 29.54 68.60 2.03 43.39 16 9 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 N -0.98 -42.73 3.06 -520.44 -1.59 -44.33 16 13 C 0.10 3.63 9.29 127.77 1.19 4.82 16 14 S 2.73 117.79 5.80 -56.49 -0.33 117.46 16 15 O -0.98 -43.45 17.09 -128.00 -2.19 -45.64 16 16 O -0.98 -46.72 16.43 -128.00 -2.10 -48.82 16 17 C -0.50 -19.62 7.25 85.24 0.62 -19.00 16 18 C -0.22 -7.64 10.58 21.99 0.23 -7.41 16 19 C 0.06 1.62 11.49 83.54 0.96 2.58 16 20 N -0.35 -9.33 4.01 -369.59 -1.48 -10.81 16 21 C 0.08 1.08 11.47 127.77 1.47 2.54 16 22 N -0.23 -8.29 12.58 -54.98 -0.69 -8.98 16 23 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 25 H 0.04 2.02 7.67 -2.38 -0.02 2.00 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.07 2.32 7.79 -2.39 -0.02 2.30 16 29 H 0.08 2.94 7.02 -2.39 -0.02 2.92 16 30 H 0.16 5.53 8.06 -2.91 -0.02 5.50 16 31 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.58 304.04 0.86 -71.72 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.10 Total: 10.73 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 5.88 Total: -34.71 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.53 Total: -114.14 kcal Atomic # 8 Polarization: -90.17 SS G_CDS: -4.29 Total: -94.46 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 117.79 SS G_CDS: -0.33 Total: 117.46 kcal Total: -72.58 0.86 -71.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569335054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.340 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds