Wall clock time and date at job start Mon Mar 30 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 S 1.76194 * 125.89916 * 179.97438 * 5 4 3 7 7 O 1.42101 * 106.40429 * 263.55818 * 6 5 4 8 8 O 1.42097 * 106.40411 * 36.47372 * 6 5 4 9 9 N 1.65601 * 107.22383 * 150.01561 * 6 5 4 10 10 C 1.46507 * 119.99596 * 64.99628 * 9 6 5 11 11 C 1.52999 * 109.46820 * 165.00513 * 10 9 6 12 12 C 1.53002 * 109.46977 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47022 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99918 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00020 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00324 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00008 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47010 * 89.99849 * 17 15 13 19 19 H 1.48491 * 109.47426 * 210.00244 * 17 15 13 20 20 H 1.48500 * 109.46965 * 330.00628 * 17 15 13 21 21 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 22 22 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 23 23 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 24 24 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 25 25 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 26 26 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 27 27 H 0.96992 * 120.00332 * 245.00043 * 9 6 5 28 28 H 1.09000 * 109.47370 * 285.00522 * 10 9 6 29 29 H 1.09004 * 109.46802 * 45.00471 * 10 9 6 30 30 H 1.09001 * 109.46872 * 299.99676 * 11 10 9 31 31 H 1.08993 * 109.47292 * 59.99905 * 11 10 9 32 32 H 1.09000 * 109.47080 * 299.99927 * 12 11 10 33 33 H 1.09004 * 109.46935 * 59.99780 * 12 11 10 34 34 H 0.96997 * 120.00463 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 16 4.9553 -1.7743 -0.0015 7 8 5.1871 -2.1352 -1.3563 8 8 5.9281 -1.1278 0.8078 9 7 4.5409 -3.1689 0.7896 10 6 3.5224 -4.0570 0.2237 11 6 3.5895 -5.4182 0.9191 12 6 2.5262 -6.3459 0.3277 13 6 2.5927 -7.6869 1.0122 14 1 3.3202 -7.8599 1.7915 15 6 1.7241 -8.6925 0.6444 16 7 1.7817 -9.8625 1.2421 17 14 0.4643 -8.3925 -0.7019 18 1 1.0496 -8.7562 -2.0174 19 1 -0.7390 -9.2248 -0.4483 20 1 0.0811 -6.9578 -0.7104 21 7 2.2892 -1.1327 -0.0002 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.9281 2.1193 -0.0007 26 1 4.4211 1.2964 -0.0011 27 1 4.9724 -3.3976 1.6276 28 1 2.5351 -3.6203 0.3743 29 1 3.7042 -4.1848 -0.8435 30 1 4.5767 -5.8549 0.7683 31 1 3.4078 -5.2904 1.9861 32 1 1.5388 -5.9094 0.4780 33 1 2.7084 -6.4737 -0.7394 34 1 1.1703 -10.5698 0.9836 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572279431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:56 Heat of formation + Delta-G solvation = -3.879423 kcal Electronic energy + Delta-G solvation = -18697.682742 eV Core-core repulsion = 15566.422741 eV Total energy + Delta-G solvation = -3131.260001 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52647 -37.21350 -36.03816 -35.88435 -33.75495 -33.19091 -31.16601 -30.60268 -27.45169 -26.76414 -22.77091 -22.45395 -21.72741 -20.39492 -19.14014 -17.96599 -17.26435 -16.81711 -16.25928 -16.13754 -15.68694 -14.69167 -14.59755 -14.28797 -14.01868 -13.81875 -13.24328 -12.98182 -12.87407 -12.39681 -12.30493 -12.12655 -12.01404 -11.69737 -11.68592 -11.28711 -11.05518 -10.90811 -10.10253 -10.06927 -9.81985 -9.66893 -9.27132 -9.17383 -9.10665 -8.53098 -6.03632 -4.01792 0.34835 1.24035 2.00905 2.09950 2.99534 3.32044 3.39044 3.42425 3.57238 4.12277 4.40510 4.45999 4.63724 4.73923 4.96723 5.05848 5.21826 5.30320 5.31402 5.38088 5.68652 5.85665 5.90771 6.08687 6.49860 6.52304 6.65792 6.83196 6.94641 7.12552 7.28431 7.41480 7.79147 8.54070 9.01244 9.58712 11.09808 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.004678 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.059775 B = 5984.005627 C = 6957.007433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.356 5.356 3 C 0.049 3.951 4 C -0.199 4.199 5 C -0.478 4.478 6 S 2.727 3.273 7 O -0.945 6.945 8 O -0.954 6.954 9 N -1.104 6.104 10 C 0.110 3.890 11 C -0.107 4.107 12 C -0.014 4.014 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.265 1.265 21 N -0.189 5.189 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.185 0.815 26 H 0.162 0.838 27 H 0.420 0.580 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 24.364 -2.174 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.141 5.141 3 C -0.097 4.097 4 C -0.229 4.229 5 C -0.724 4.724 6 S 2.808 3.192 7 O -0.934 6.934 8 O -0.943 6.943 9 N -0.867 5.867 10 C -0.015 4.015 11 C -0.147 4.147 12 C -0.052 4.052 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 N -0.016 5.016 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.202 0.798 26 H 0.180 0.820 27 H 0.256 0.744 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.721 23.488 -2.727 23.708 hybrid contribution -0.941 0.942 -0.124 1.337 sum -2.662 24.430 -2.851 24.739 Atomic orbital electron populations 1.22084 0.73383 1.05292 1.04241 1.49039 1.07429 1.04176 1.53474 1.22668 0.90928 0.93651 1.02423 1.21125 0.98089 0.91788 1.11891 1.35290 1.12791 1.10003 1.14276 1.01308 0.71924 0.72057 0.73922 1.93629 1.82990 1.81997 1.34831 1.93605 1.55493 1.75523 1.69672 1.55305 1.55047 1.37340 1.39022 1.21688 0.89754 0.91652 0.98419 1.21668 1.01454 0.91894 0.99651 1.19550 0.94091 0.95235 0.96318 1.21122 1.18903 0.94837 1.20951 0.90955 1.25027 0.97211 0.94963 0.96299 1.69911 1.38409 1.03558 1.42429 0.86783 0.81284 0.78623 0.82632 1.20203 1.21474 1.18967 1.77446 0.99348 1.08183 1.16617 0.89853 0.88921 0.88427 0.79799 0.81994 0.74439 0.91220 0.90599 0.91788 0.92004 0.96354 0.96636 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.47 59.85 0.69 1.22 16 2 N -0.36 -3.71 4.01 -68.16 -0.27 -3.98 16 3 C 0.05 0.43 11.49 -17.22 -0.20 0.23 16 4 C -0.20 -2.20 10.71 -40.01 -0.43 -2.63 16 5 C -0.48 -6.51 7.18 -17.36 -0.12 -6.63 16 6 S 2.73 38.78 5.88 -107.50 -0.63 38.15 16 7 O -0.95 -16.21 17.49 -57.18 -1.00 -17.21 16 8 O -0.95 -14.55 17.97 -57.18 -1.03 -15.58 16 9 N -1.10 -15.34 6.00 -10.61 -0.06 -15.41 16 10 C 0.11 1.79 6.04 -4.04 -0.02 1.76 16 11 C -0.11 -2.04 5.29 -26.73 -0.14 -2.19 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 14 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 17 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 N -0.19 -2.64 11.49 31.27 0.36 -2.28 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 26 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.42 4.98 8.65 -34.47 -0.30 4.69 16 28 H 0.07 1.10 7.23 -51.93 -0.38 0.72 16 29 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -37.35 307.91 -7.06 -44.41 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.39 Total: -0.71 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.77 Total: -21.90 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.80 Total: -48.78 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.03 Total: -32.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 38.78 SS G_CDS: -0.63 Total: 38.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.35 -7.06 -44.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572279431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.531 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds