Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.52996 * 109.47188 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47516 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00143 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38800 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99698 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00040 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47116 * 90.00080 * 11 9 7 13 13 H 1.48498 * 109.47178 * 209.99868 * 11 9 7 14 14 H 1.48503 * 109.47386 * 330.00228 * 11 9 7 15 15 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 16 16 C 1.50702 * 109.46796 * 66.04964 * 15 2 1 17 17 N 1.30097 * 126.23409 * 90.02753 * 16 15 2 18 18 N 1.28654 * 109.50608 * 179.97438 * 17 16 15 19 19 C 1.30862 * 109.33747 * 359.97438 * 18 17 16 20 20 O 1.35421 * 126.35218 * 180.02562 * 19 18 17 21 21 O 1.34510 * 107.30251 * 359.77600 * 19 18 17 22 22 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 23 23 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 25 25 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 26 26 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 27 27 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 28 28 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 29 29 H 1.08999 * 109.47452 * 300.00348 * 5 4 3 30 30 H 1.09012 * 109.47215 * 59.99738 * 5 4 3 31 31 H 0.97008 * 119.99440 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.46988 * 186.04548 * 15 2 1 33 33 H 1.08996 * 109.46945 * 306.05035 * 15 2 1 34 34 H 0.96704 * 113.99853 * 89.97583 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1800 3.4857 -1.3185 6 16 1.7500 4.2970 -2.8783 7 6 2.4839 5.8769 -2.6139 8 1 3.0035 6.0832 -1.6898 9 6 2.3951 6.8561 -3.5937 10 7 2.9438 8.0362 -3.3963 11 14 1.4983 6.4987 -5.1928 12 1 0.0660 6.8633 -5.0492 13 1 2.1045 7.2959 -6.2892 14 1 1.6113 5.0526 -5.5113 15 6 1.9955 -0.7659 1.1376 16 6 1.6371 -2.2204 0.9728 17 7 2.3497 -3.1240 0.3661 18 7 1.7409 -4.2563 0.4163 19 6 0.6115 -4.1128 1.0616 20 8 -0.2977 -5.0841 1.3142 21 8 0.5237 -2.8228 1.4324 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.5610 1.9274 0.8308 26 1 3.0796 1.3445 0.1082 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4876 30 1 3.2644 3.4583 -1.2105 31 1 2.8814 8.7206 -4.0809 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3872 2.0627 34 1 -0.1511 -5.5530 2.1471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595545928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = 4.048071 kcal Electronic energy + Delta-G solvation = -17931.193469 eV Core-core repulsion = 14800.277230 eV Total energy + Delta-G solvation = -3130.916239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.59876 -38.66427 -38.13649 -36.64296 -33.54325 -32.44417 -31.21758 -27.97765 -27.08323 -25.68436 -24.04283 -23.96796 -22.13822 -20.83673 -20.13992 -18.20738 -17.49103 -17.20684 -16.21308 -15.95678 -15.69663 -15.26265 -14.96511 -14.45994 -14.25432 -13.63047 -13.07148 -12.88084 -12.85306 -12.68401 -12.32678 -12.27520 -12.12731 -11.87722 -11.54768 -11.30667 -11.07899 -11.03553 -10.47696 -10.24897 -9.94702 -9.78639 -9.01178 -8.74883 -8.57160 -6.95261 -6.29151 -4.01510 0.55614 1.24238 1.91929 2.94871 3.04430 3.29806 3.45862 3.51204 3.72730 3.86716 4.31329 4.52873 4.71183 4.75720 4.77452 4.87416 4.95713 5.09026 5.10518 5.14590 5.28440 5.38126 5.52983 5.63637 5.76109 5.84940 6.15915 6.36540 6.40091 6.51717 6.62743 6.72200 7.85390 7.94617 8.43232 9.16878 10.80286 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.052142 B = 0.002747 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.866111 B =10189.989880 C =10373.391785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.062 3.938 4 C -0.098 4.098 5 C -0.083 4.083 6 S -0.214 6.214 7 C -0.502 4.502 8 H 0.088 0.912 9 C 0.091 3.909 10 N -0.882 5.882 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.237 1.237 15 C 0.149 3.851 16 C 0.192 3.808 17 N -0.255 5.255 18 N -0.267 5.267 19 C 0.330 3.670 20 O -0.402 6.402 21 O -0.240 6.240 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.270 0.730 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -21.980 13.376 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.066 4.066 4 C -0.137 4.137 5 C -0.232 4.232 6 S 0.014 5.986 7 C -0.650 4.650 8 H 0.106 0.894 9 C -0.117 4.117 10 N -0.519 5.519 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.161 1.161 15 C 0.020 3.980 16 C -0.019 4.019 17 N -0.104 5.104 18 N -0.128 5.128 19 C 0.080 3.920 20 O -0.209 6.209 21 O -0.122 6.122 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -5.100 -22.839 10.858 25.797 hybrid contribution -1.003 1.160 2.196 2.679 sum -6.103 -21.678 13.054 26.031 Atomic orbital electron populations 1.22564 0.86613 1.01801 1.02260 1.61945 1.08724 1.15242 1.40328 1.22238 1.00605 0.85314 0.98444 1.21350 1.01553 0.94095 0.96717 1.23005 1.02910 0.96694 1.00543 1.84199 1.75723 1.16136 1.22572 1.22121 1.40385 0.95010 1.07474 0.89403 1.24800 0.94483 0.94048 0.98367 1.69941 1.43138 1.03785 1.35013 0.86670 0.80416 0.81170 0.83104 1.19418 1.20100 1.16097 1.20607 1.02829 0.80260 0.94323 1.27624 0.80242 0.98823 0.95244 1.74511 1.24722 0.94825 1.16323 1.74980 1.02338 1.17521 1.18001 1.24424 0.90334 0.80025 0.97184 1.85035 1.47444 1.42588 1.45798 1.84885 1.42144 1.23182 1.61950 0.89670 0.92195 0.94698 0.93915 0.89821 0.90344 0.91404 0.91558 0.91197 0.91974 0.85354 0.91029 0.72155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.15 60.07 0.55 0.71 16 2 N -0.54 -5.65 4.75 -244.37 -1.16 -6.81 16 3 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 4 C -0.10 -1.41 5.14 -26.73 -0.14 -1.55 16 5 C -0.08 -1.51 5.67 37.16 0.21 -1.30 16 6 S -0.21 -5.14 19.41 -107.50 -2.09 -7.23 16 7 C -0.50 -14.43 10.04 30.94 0.31 -14.12 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 10 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 11 Si 0.86 21.49 27.74 -169.99 -4.71 16.78 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 15 C 0.15 1.24 5.59 -4.98 -0.03 1.21 16 16 C 0.19 1.99 7.03 -13.01 -0.09 1.90 16 17 N -0.25 -3.24 12.21 32.58 0.40 -2.85 16 18 N -0.27 -3.31 12.25 29.24 0.36 -2.95 16 19 C 0.33 3.21 9.79 52.35 0.51 3.72 16 20 O -0.40 -2.51 13.63 -41.05 -0.56 -3.07 16 21 O -0.24 -2.38 10.21 -18.97 -0.19 -2.57 16 22 H 0.08 0.91 6.47 -51.93 -0.34 0.57 16 23 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 24 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 29 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.07 1.28 8.14 -51.91 -0.42 0.86 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.13 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 34 H 0.42 -0.05 9.06 45.56 0.41 0.36 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -34.62 307.73 -4.88 -39.50 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -3.54 Total: -3.36 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 1.21 Total: -6.22 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.37 Total: -38.47 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.75 Total: -5.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.09 Total: -7.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.62 -4.88 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595545928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.545 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds