Wall clock time and date at job start Mon Mar 30 2020 01:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.52996 * 109.47188 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47516 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00143 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38800 * 119.99891 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99698 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00040 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47116 * 90.00080 * 11 9 7 13 13 H 1.48498 * 109.47178 * 209.99868 * 11 9 7 14 14 H 1.48503 * 109.47386 * 330.00228 * 11 9 7 15 15 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 16 16 C 1.50702 * 109.46796 * 66.04964 * 15 2 1 17 17 N 1.30097 * 126.23409 * 90.02753 * 16 15 2 18 18 N 1.28654 * 109.50608 * 179.97438 * 17 16 15 19 19 C 1.30862 * 109.33747 * 359.97438 * 18 17 16 20 20 O 1.35421 * 126.35218 * 180.02562 * 19 18 17 21 21 O 1.34510 * 107.30251 * 359.77600 * 19 18 17 22 22 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 23 23 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 25 25 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 26 26 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 27 27 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 28 28 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 29 29 H 1.08999 * 109.47452 * 300.00348 * 5 4 3 30 30 H 1.09012 * 109.47215 * 59.99738 * 5 4 3 31 31 H 0.97008 * 119.99440 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.46988 * 186.04548 * 15 2 1 33 33 H 1.08996 * 109.46945 * 306.05035 * 15 2 1 34 34 H 0.96704 * 113.99853 * 89.97583 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1800 3.4857 -1.3185 6 16 1.7500 4.2970 -2.8783 7 6 2.4839 5.8769 -2.6139 8 1 3.0035 6.0832 -1.6898 9 6 2.3951 6.8561 -3.5937 10 7 2.9438 8.0362 -3.3963 11 14 1.4983 6.4987 -5.1928 12 1 0.0660 6.8633 -5.0492 13 1 2.1045 7.2959 -6.2892 14 1 1.6113 5.0526 -5.5113 15 6 1.9955 -0.7659 1.1376 16 6 1.6371 -2.2204 0.9728 17 7 2.3497 -3.1240 0.3661 18 7 1.7409 -4.2563 0.4163 19 6 0.6115 -4.1128 1.0616 20 8 -0.2977 -5.0841 1.3142 21 8 0.5237 -2.8228 1.4324 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.5610 1.9274 0.8308 26 1 3.0796 1.3445 0.1082 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4876 30 1 3.2644 3.4583 -1.2105 31 1 2.8814 8.7206 -4.0809 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3872 2.0627 34 1 -0.1511 -5.5530 2.1471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595545928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:38 Heat of formation + Delta-G solvation = -28.370099 kcal Electronic energy + Delta-G solvation = -17932.599227 eV Core-core repulsion = 14800.277230 eV Total energy + Delta-G solvation = -3132.321997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.35749 -39.29107 -38.85981 -37.41889 -34.69179 -34.60430 -32.07680 -28.70768 -28.21606 -27.75165 -24.98663 -24.75868 -23.00622 -21.83790 -20.73788 -19.61068 -18.93119 -17.94227 -17.13585 -17.00294 -16.80225 -16.49134 -16.11446 -15.67550 -15.47584 -14.92434 -14.49109 -13.81737 -13.71373 -13.60780 -13.50323 -13.43078 -13.12380 -13.07964 -12.98559 -12.71266 -12.45945 -12.06913 -12.02575 -11.70382 -11.57451 -11.14581 -10.73206 -10.52251 -9.48874 -8.96475 -8.50516 -6.20907 -0.13255 0.56565 1.12458 1.16215 1.32547 1.49286 1.77651 2.25972 2.35376 2.71451 2.87751 2.90458 3.21492 3.83743 3.96866 4.01724 4.14118 4.18795 4.22254 4.35235 4.45121 4.49036 4.57171 4.59988 4.73324 4.85246 4.98303 5.18466 5.32299 5.71561 5.83098 5.86818 6.07408 6.12181 6.94250 7.08482 8.62388 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.052142 B = 0.002747 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.866111 B =10189.989880 C =10373.391785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.553 5.553 3 C 0.073 3.927 4 C -0.088 4.088 5 C -0.067 4.067 6 S -0.229 6.229 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.037 3.963 10 N -0.923 5.923 11 Si 0.924 3.076 12 H -0.262 1.262 13 H -0.265 1.265 14 H -0.230 1.230 15 C 0.150 3.850 16 C 0.196 3.804 17 N -0.288 5.288 18 N -0.305 5.305 19 C 0.345 3.655 20 O -0.400 6.400 21 O -0.240 6.240 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.276 0.724 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -23.428 14.029 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.279 5.279 3 C -0.056 4.056 4 C -0.127 4.127 5 C -0.216 4.216 6 S -0.001 6.001 7 C -0.666 4.666 8 H 0.071 0.929 9 C -0.168 4.168 10 N -0.561 5.561 11 Si 0.746 3.254 12 H -0.187 1.187 13 H -0.189 1.189 14 H -0.153 1.153 15 C 0.021 3.979 16 C -0.016 4.016 17 N -0.136 5.136 18 N -0.165 5.165 19 C 0.095 3.905 20 O -0.211 6.211 21 O -0.122 6.122 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -6.142 -24.321 11.540 27.612 hybrid contribution -0.702 1.509 2.143 2.713 sum -6.844 -22.812 13.683 27.467 Atomic orbital electron populations 1.22524 0.86492 1.01508 1.02486 1.61805 1.08997 1.14990 1.42074 1.22055 1.01494 0.85538 0.96486 1.21235 1.01309 0.91474 0.98703 1.23066 1.03172 0.98413 0.96988 1.83954 1.75415 1.13667 1.27036 1.22343 1.40207 0.97777 1.06276 0.92857 1.25765 0.95274 0.93824 1.01918 1.70040 1.44609 1.04919 1.36530 0.85726 0.79344 0.81453 0.78910 1.18660 1.18936 1.15346 1.20805 1.03870 0.78698 0.94511 1.27980 0.79948 0.99249 0.94386 1.74433 1.25984 0.95499 1.17681 1.74896 1.03811 1.17922 1.19896 1.24495 0.89813 0.80459 0.95684 1.85010 1.46386 1.41831 1.47905 1.84905 1.42040 1.23265 1.61991 0.90684 0.92737 0.93209 0.92392 0.88624 0.91328 0.91253 0.91208 0.91149 0.91470 0.83874 0.88260 0.68861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.15 127.69 1.17 1.48 16 2 N -0.55 -10.19 4.75 -927.06 -4.41 -14.60 16 3 C 0.07 1.37 4.96 86.30 0.43 1.80 16 4 C -0.09 -2.36 5.14 30.59 0.16 -2.20 16 5 C -0.07 -2.39 5.67 71.98 0.41 -1.98 16 6 S -0.23 -10.83 19.41 -56.49 -1.10 -11.93 16 7 C -0.52 -30.23 10.04 67.95 0.68 -29.55 16 8 H 0.05 3.36 8.03 -2.91 -0.02 3.33 16 9 C 0.04 2.15 5.50 84.86 0.47 2.62 16 10 N -0.92 -56.65 13.97 21.65 0.30 -56.35 16 11 Si 0.92 44.21 27.74 68.60 1.90 46.11 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.23 -10.65 6.74 99.48 0.67 -9.98 16 15 C 0.15 2.05 5.59 85.56 0.48 2.53 16 16 C 0.20 3.73 7.03 88.37 0.62 4.35 16 17 N -0.29 -7.09 12.21 -165.32 -2.02 -9.10 16 18 N -0.30 -7.32 12.25 -289.31 -3.54 -10.87 16 19 C 0.35 6.21 9.79 130.39 1.28 7.48 16 20 O -0.40 -4.14 13.63 -65.08 -0.89 -5.02 16 21 O -0.24 -4.30 10.21 13.93 0.14 -4.16 16 22 H 0.07 1.46 6.47 -2.38 -0.02 1.45 16 23 H 0.05 1.02 6.63 -2.39 -0.02 1.01 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 26 H 0.10 1.61 7.93 -2.39 -0.02 1.59 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 1.85 6.55 -2.39 -0.02 1.83 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 32 H 0.14 1.53 7.93 -2.39 -0.02 1.51 16 33 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.45 -1.24 9.06 -74.05 -0.67 -1.91 16 Total: -1.00 -75.60 307.73 -3.50 -79.10 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 0.42 Total: 0.27 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.69 Total: -13.46 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -9.67 Total: -90.92 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.75 Total: -9.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.10 Total: -11.93 kcal Total: -75.60 -3.50 -79.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595545928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.734 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds