Wall clock time and date at job start Mon Mar 30 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47080 * 2 1 4 4 C 1.36937 * 120.00223 * 278.41209 * 3 2 1 5 5 H 1.08000 * 119.99913 * 138.29884 * 4 3 2 6 6 C 1.38810 * 120.00135 * 318.29758 * 4 3 2 7 7 N 1.31625 * 120.00200 * 341.19848 * 6 4 3 8 8 Si 1.86800 * 120.00294 * 161.19120 * 6 4 3 9 9 H 1.48502 * 109.46786 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47165 * 120.00243 * 8 6 4 11 11 H 1.48502 * 109.47444 * 240.00657 * 8 6 4 12 12 S 1.65600 * 119.99882 * 98.41430 * 3 2 1 13 13 O 1.42100 * 106.40142 * 156.45549 * 12 3 2 14 14 O 1.42102 * 106.40369 * 23.54021 * 12 3 2 15 15 C 1.76197 * 107.22050 * 269.99930 * 12 3 2 16 16 C 1.34667 * 126.58926 * 270.16648 * 15 12 3 17 17 N 1.34134 * 108.01887 * 180.27943 * 16 15 12 18 18 C 1.30493 * 109.25263 * 359.73311 * 17 16 15 19 19 C 1.50706 * 125.64912 * 179.97438 * 18 17 16 20 20 N 1.35039 * 108.70730 * 359.97438 * 18 17 16 21 21 C 1.46494 * 126.40347 * 179.97438 * 20 18 17 22 22 H 1.09001 * 109.47240 * 59.99958 * 1 2 3 23 23 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46746 * 300.00137 * 1 2 3 25 25 H 1.09007 * 109.46829 * 240.00515 * 2 1 3 26 26 H 1.08998 * 109.47634 * 120.00365 * 2 1 3 27 27 H 0.96998 * 120.00137 * 179.97438 * 7 6 4 28 28 H 1.07999 * 125.99643 * 0.04949 * 16 15 12 29 29 H 1.08999 * 109.47221 * 270.04536 * 19 18 17 30 30 H 1.09006 * 109.47069 * 30.03924 * 19 18 17 31 31 H 1.08996 * 109.47315 * 150.03768 * 19 18 17 32 32 H 1.09005 * 109.46916 * 90.02978 * 21 20 18 33 33 H 1.09000 * 109.47507 * 210.02890 * 21 20 18 34 34 H 1.09001 * 109.47082 * 330.03125 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0830 2.0846 -1.1731 5 1 1.7779 3.1203 -1.1993 6 6 2.5407 1.4665 -2.3287 7 7 3.2475 0.3591 -2.2470 8 14 2.1534 2.2061 -3.9997 9 1 1.3506 3.4424 -3.8197 10 1 3.4202 2.5367 -4.7004 11 1 1.3817 1.2276 -4.8074 12 16 2.4922 2.0919 1.4187 13 8 3.3894 3.1354 1.0647 14 8 2.8402 1.0337 2.3010 15 6 1.0718 2.8707 2.1119 16 6 0.6605 4.1338 1.8904 17 7 -0.4543 4.3389 2.6077 18 6 -0.7524 3.2492 3.2606 19 6 -1.9331 3.0714 4.1802 20 7 0.1722 2.3070 2.9760 21 6 0.2099 0.9396 3.5002 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.5670 -0.0730 -3.0545 28 1 1.1454 4.8562 1.2507 29 1 -1.6483 3.3488 5.1951 30 1 -2.7528 3.7077 3.8462 31 1 -2.2524 2.0294 4.1643 32 1 -0.3503 0.2806 2.8368 33 1 1.2445 0.6015 3.5594 34 1 -0.2364 0.9192 4.4944 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599219209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:03 Heat of formation + Delta-G solvation = -8.179070 kcal Electronic energy + Delta-G solvation = -20364.428922 eV Core-core repulsion = 17232.982474 eV Total energy + Delta-G solvation = -3131.446448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82951 -36.28962 -35.89689 -34.74311 -33.78002 -31.82475 -31.71638 -29.28502 -27.35746 -26.48114 -24.67337 -21.93792 -21.50435 -19.93281 -18.56143 -17.68121 -16.71241 -16.32585 -15.69448 -15.42890 -14.79055 -14.48108 -13.82099 -13.59156 -13.35845 -13.22099 -12.92685 -12.72516 -12.50259 -12.35427 -12.30611 -11.99378 -11.28579 -11.07422 -11.01494 -10.93891 -10.89972 -10.71364 -10.45814 -10.27094 -9.89170 -9.78257 -9.44176 -9.06930 -8.42540 -7.74730 -6.32767 -4.07300 1.39799 1.88731 2.93489 3.18045 3.21358 3.27094 3.32298 4.11626 4.42369 4.47804 4.67769 4.85964 4.97302 5.02847 5.25008 5.32912 5.41038 5.54911 5.69363 5.74271 5.97412 6.04000 6.15340 6.25672 6.38753 6.48372 6.84595 6.86149 7.23771 7.29956 7.34829 7.69410 8.12876 8.37832 8.94090 9.34084 10.69839 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.007477 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.175266 B = 3744.144805 C = 3864.550669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 N -0.835 5.835 4 C -0.280 4.280 5 H 0.090 0.910 6 C 0.043 3.957 7 N -0.854 5.854 8 Si 0.917 3.083 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 S 2.648 3.352 13 O -0.958 6.958 14 O -1.002 7.002 15 C -0.569 4.569 16 C 0.087 3.913 17 N -0.502 5.502 18 C 0.223 3.777 19 C -0.068 4.068 20 N -0.404 5.404 21 C 0.038 3.962 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.268 0.732 28 H 0.182 0.818 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -1.187 7.908 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.667 5.667 4 C -0.418 4.418 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.493 5.493 8 Si 0.743 3.257 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 S 2.741 3.259 13 O -0.947 6.947 14 O -0.991 6.991 15 C -0.762 4.762 16 C -0.067 4.067 17 N -0.222 5.222 18 C -0.041 4.041 19 C -0.127 4.127 20 N -0.084 5.084 21 C -0.104 4.104 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.199 0.801 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.437 -0.730 8.463 11.972 hybrid contribution -0.389 -0.180 -0.858 0.959 sum -8.825 -0.911 7.605 11.685 Atomic orbital electron populations 1.22226 0.98814 0.99841 1.01329 1.21250 0.91457 0.84104 1.04132 1.52488 1.76102 1.20044 1.18037 1.19129 1.40611 0.97378 0.84652 0.89274 1.25510 0.94104 0.96746 1.00198 1.69976 1.30957 1.18934 1.29465 0.86028 0.78501 0.79333 0.81808 1.18992 1.20553 1.20611 1.04890 0.72946 0.73636 0.74388 1.93461 1.58869 1.59496 1.82902 1.93319 1.82068 1.55369 1.68347 1.34472 1.20320 1.08205 1.13166 1.22255 0.92675 0.93676 0.98137 1.70261 1.15577 1.24527 1.11865 1.23701 0.94522 0.85364 1.00551 1.20218 0.92630 1.03212 0.96632 1.44836 1.18885 1.11812 1.32872 1.22681 1.08000 0.79770 0.99945 0.92011 0.93384 0.94779 0.87479 0.92230 0.92143 0.80059 0.90045 0.89026 0.90639 0.89708 0.85984 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.17 37.16 0.38 -2.55 16 2 C 0.12 2.53 6.06 -4.04 -0.02 2.51 16 3 N -0.84 -19.95 2.80 -59.91 -0.17 -20.11 16 4 C -0.28 -7.15 8.78 -15.06 -0.13 -7.28 16 5 H 0.09 2.23 7.90 -52.49 -0.41 1.82 16 6 C 0.04 1.09 5.06 -17.43 -0.09 1.00 16 7 N -0.85 -22.43 11.51 55.49 0.64 -21.79 16 8 Si 0.92 19.73 29.59 -169.99 -5.03 14.69 16 9 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 12 S 2.65 61.23 5.74 -107.50 -0.62 60.61 16 13 O -0.96 -25.05 17.08 -57.17 -0.98 -26.03 16 14 O -1.00 -23.21 13.92 -57.17 -0.80 -24.01 16 15 C -0.57 -11.53 7.02 -16.56 -0.12 -11.64 16 16 C 0.09 1.74 11.64 -17.81 -0.21 1.53 16 17 N -0.50 -9.49 11.25 -10.82 -0.12 -9.61 16 18 C 0.22 3.60 7.90 -155.42 -1.23 2.37 16 19 C -0.07 -0.71 9.98 36.01 0.36 -0.35 16 20 N -0.40 -6.90 3.15 -120.31 -0.38 -7.28 16 21 C 0.04 0.51 10.29 59.84 0.62 1.13 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.57 6.32 -51.93 -0.33 0.24 16 25 H 0.11 2.53 5.69 -51.93 -0.30 2.23 16 26 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.18 3.40 8.06 -52.49 -0.42 2.98 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 32 H 0.08 1.02 6.61 -51.93 -0.34 0.68 16 33 H 0.12 1.88 5.62 -51.93 -0.29 1.59 16 34 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -32.13 296.55 -7.50 -39.63 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.08 Total: 2.71 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.44 Total: -13.28 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.03 Total: -58.80 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.77 Total: -50.04 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 61.23 SS G_CDS: -0.62 Total: 60.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.13 -7.50 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599219209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.455 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds