Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36740 * 120.00512 * 2 1 4 4 H 1.07996 * 120.00048 * 200.73142 * 3 2 1 5 5 C 1.39121 * 119.99733 * 20.44762 * 3 2 1 6 6 N 1.31322 * 120.00258 * 23.09563 * 5 3 2 7 7 Si 1.86800 * 120.00131 * 203.08972 * 5 3 2 8 8 H 1.48507 * 109.47023 * 90.00178 * 7 5 3 9 9 H 1.48502 * 109.47312 * 210.00349 * 7 5 3 10 10 H 1.48497 * 109.47149 * 330.00510 * 7 5 3 11 11 C 1.34780 * 119.99992 * 179.97438 * 2 1 3 12 12 O 1.21645 * 119.99819 * 8.01258 * 11 2 1 13 13 C 1.47416 * 120.00438 * 188.00921 * 11 2 1 14 14 N 1.32657 * 120.90332 * 9.48780 * 13 11 2 15 15 N 1.28022 * 123.08562 * 179.73908 * 14 13 11 16 16 C 1.32262 * 124.12884 * 0.57004 * 15 14 13 17 17 O 1.35309 * 120.21579 * 179.74755 * 16 15 14 18 18 C 1.41128 * 119.57036 * 359.72179 * 16 15 14 19 19 C 1.39955 * 122.87802 * 180.02562 * 18 16 15 20 20 C 1.36406 * 119.36010 * 180.02562 * 19 18 16 21 21 C 1.39238 * 121.07344 * 359.95774 * 20 19 18 22 22 C 1.36519 * 121.01603 * 359.97438 * 21 20 19 23 23 C 1.39587 * 119.34301 * 0.02950 * 22 21 20 24 24 H 1.09005 * 109.46798 * 53.89715 * 1 2 3 25 25 H 1.08999 * 109.47584 * 173.89290 * 1 2 3 26 26 H 1.09000 * 109.47339 * 293.89966 * 1 2 3 27 27 H 0.96995 * 120.00206 * 179.97438 * 6 5 3 28 28 H 0.96699 * 113.99462 * 269.98094 * 17 16 15 29 29 H 1.08001 * 120.31919 * 0.02562 * 19 18 16 30 30 H 1.08002 * 119.46358 * 179.97438 * 20 19 18 31 31 H 1.08008 * 119.49487 * 180.02562 * 21 20 19 32 32 H 1.08003 * 120.32465 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1488 1.1841 0.0000 4 1 3.1763 1.2143 -0.3311 5 6 1.5189 2.3510 0.4209 6 7 0.4792 2.2844 1.2203 7 14 2.1524 4.0127 -0.1509 8 1 1.4700 4.3949 -1.4133 9 1 1.8742 5.0338 0.8910 10 1 3.6165 3.9306 -0.3849 11 6 2.1388 -1.1672 0.0005 12 8 1.5395 -2.2156 -0.1459 13 6 3.6022 -1.1735 0.1784 14 7 4.2513 -0.0694 0.5241 15 7 5.5194 -0.0286 0.6945 16 6 6.3231 -1.0671 0.5371 17 8 7.6552 -0.9332 0.7334 18 6 5.7823 -2.3160 0.1636 19 6 6.5678 -3.4595 -0.0212 20 6 5.9695 -4.6306 -0.3832 21 6 4.5918 -4.7059 -0.5703 22 6 3.7973 -3.6094 -0.3966 23 6 4.3784 -2.3954 -0.0263 24 1 -0.3633 0.6056 -0.8304 25 1 -0.3634 -1.0218 -0.1093 26 1 -0.3634 0.4163 0.9395 27 1 0.0403 3.0980 1.5141 28 1 8.1468 -0.6847 -0.0614 29 1 7.6375 -3.4150 0.1213 30 1 6.5741 -5.5139 -0.5267 31 1 4.1446 -5.6465 -0.8564 32 1 2.7298 -3.6805 -0.5443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700840604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = 5.904248 kcal Electronic energy + Delta-G solvation = -20663.282633 eV Core-core repulsion = 17397.002933 eV Total energy + Delta-G solvation = -3266.279701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27459 -40.30793 -39.03722 -38.41767 -36.89427 -33.69530 -33.22778 -32.48501 -31.32336 -28.53024 -27.21167 -25.58377 -25.14195 -23.46468 -21.66831 -20.30996 -19.76601 -19.41972 -18.54914 -17.45897 -17.01342 -16.53535 -16.35760 -16.09895 -15.59746 -15.48712 -15.17962 -14.83708 -14.44140 -13.83358 -13.60551 -13.44283 -13.34578 -13.12993 -13.03109 -12.79336 -12.71131 -12.37515 -12.11365 -11.81468 -11.25274 -11.16822 -10.37334 -10.30029 -10.24043 -9.82418 -9.39348 -8.45974 -5.93943 -1.01690 -0.32239 0.59349 1.35675 1.43715 1.56865 1.63601 2.21575 2.23927 2.38575 2.59766 2.87998 3.03658 3.32221 3.57874 3.64955 3.88593 4.09261 4.23601 4.35529 4.43775 4.63687 4.79287 4.81754 4.85570 5.04456 5.23440 5.24688 5.41684 5.44804 5.54091 5.66719 5.86076 6.38341 6.52445 6.93448 7.29417 7.74612 7.90003 8.48781 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.021692 B = 0.006868 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.517772 B = 4075.905644 C = 5218.281168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.401 5.401 3 C -0.322 4.322 4 H 0.128 0.872 5 C 0.005 3.995 6 N -0.864 5.864 7 Si 0.989 3.011 8 H -0.262 1.262 9 H -0.273 1.273 10 H -0.267 1.267 11 C 0.460 3.540 12 O -0.628 6.628 13 C 0.055 3.945 14 N -0.220 5.220 15 N -0.332 5.332 16 C 0.296 3.704 17 O -0.466 6.466 18 C -0.117 4.117 19 C -0.082 4.082 20 C -0.093 4.093 21 C -0.090 4.090 22 C -0.113 4.113 23 C -0.063 4.063 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.282 0.718 28 H 0.425 0.575 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.483 -9.326 -5.067 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.113 5.113 3 C -0.452 4.452 4 H 0.145 0.855 5 C -0.202 4.202 6 N -0.500 5.500 7 Si 0.811 3.189 8 H -0.187 1.187 9 H -0.198 1.198 10 H -0.191 1.191 11 C 0.252 3.748 12 O -0.520 6.520 13 C -0.102 4.102 14 N -0.058 5.058 15 N -0.174 5.174 16 C 0.097 3.903 17 O -0.275 6.275 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.071 4.071 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.288 0.712 29 H 0.190 0.810 30 H 0.197 0.803 31 H 0.182 0.818 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.840 -8.142 -4.063 14.153 hybrid contribution -0.026 -0.055 -0.604 0.607 sum 10.814 -8.197 -4.667 14.349 Atomic orbital electron populations 1.21784 0.79406 1.00468 1.03614 1.44006 1.06972 1.05521 1.54814 1.20859 1.00260 0.83551 1.40528 0.85527 1.26326 0.96184 1.03611 0.94094 1.69959 1.21646 1.31473 1.26902 0.84981 0.79200 0.76134 0.78547 1.18712 1.19791 1.19095 1.17426 0.85425 0.84004 0.87979 1.90445 1.68731 1.31078 1.61739 1.24227 0.95922 0.91336 0.98740 1.73611 0.99426 1.22524 1.10207 1.72351 1.00179 1.29028 1.15843 1.21114 0.87071 0.89122 0.92955 1.84591 1.11576 1.91045 1.40281 1.19166 0.93024 0.96778 1.03501 1.21259 1.01255 0.90239 0.97468 1.21587 0.94590 0.98979 0.95979 1.21637 0.94301 0.98729 0.96207 1.21743 1.02910 0.91250 0.97339 1.19774 0.92572 0.94719 0.99992 0.92812 0.91991 0.89609 0.90749 0.71234 0.80971 0.80297 0.81770 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.44 9.34 127.77 1.19 5.63 16 2 N -0.40 -21.77 3.01 -662.70 -1.99 -23.77 16 3 C -0.32 -17.51 8.28 84.14 0.70 -16.81 16 4 H 0.13 7.06 5.32 -2.91 -0.02 7.04 16 5 C 0.00 0.24 5.11 84.98 0.43 0.67 16 6 N -0.86 -45.13 10.84 21.69 0.24 -44.89 16 7 Si 0.99 41.01 29.61 68.60 2.03 43.04 16 8 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 C 0.46 24.63 7.56 86.66 0.65 25.28 16 12 O -0.63 -33.66 13.19 -4.17 -0.06 -33.72 16 13 C 0.05 2.71 6.84 43.51 0.30 3.01 16 14 N -0.22 -11.15 7.59 -44.83 -0.34 -11.49 16 15 N -0.33 -14.93 11.40 -169.51 -1.93 -16.86 16 16 C 0.30 10.45 7.91 85.34 0.67 11.13 16 17 O -0.47 -11.82 12.94 -85.96 -1.11 -12.93 16 18 C -0.12 -3.90 5.76 -21.25 -0.12 -4.03 16 19 C -0.08 -1.81 9.63 22.26 0.21 -1.60 16 20 C -0.09 -1.68 9.95 22.08 0.22 -1.46 16 21 C -0.09 -2.09 9.96 22.11 0.22 -1.87 16 22 C -0.11 -3.98 9.32 22.19 0.21 -3.78 16 23 C -0.06 -2.57 5.90 -19.98 -0.12 -2.69 16 24 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 25 H 0.06 2.93 6.92 -2.39 -0.02 2.92 16 26 H 0.09 4.43 6.17 -2.39 -0.01 4.42 16 27 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 28 H 0.42 5.75 9.06 -74.06 -0.67 5.07 16 29 H 0.17 2.49 7.75 -2.91 -0.02 2.46 16 30 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.15 5.88 5.35 -2.91 -0.02 5.87 16 Total: -1.00 -72.17 278.55 1.93 -70.23 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.53 Total: 16.89 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 4.57 Total: 13.49 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.03 Total: -97.01 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.17 Total: -46.65 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -72.17 1.93 -70.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700840604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.139 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds