Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36817 * 119.99483 * 2 1 4 4 H 1.08007 * 119.99933 * 132.80929 * 3 2 1 5 5 C 1.39071 * 120.00191 * 312.80740 * 3 2 1 6 6 N 1.31352 * 120.00130 * 172.31050 * 5 3 2 7 7 Si 1.86804 * 120.00222 * 352.30663 * 5 3 2 8 8 H 1.48493 * 109.46954 * 95.60262 * 7 5 3 9 9 H 1.48496 * 109.47180 * 215.60800 * 7 5 3 10 10 H 1.48505 * 109.46574 * 335.60537 * 7 5 3 11 11 C 1.34769 * 120.00040 * 180.02562 * 2 1 3 12 12 O 1.21621 * 120.00378 * 348.78041 * 11 2 1 13 13 C 1.47582 * 120.00025 * 169.05988 * 11 2 1 14 14 C 1.39813 * 120.00631 * 336.80024 * 13 11 2 15 15 C 1.37109 * 119.99198 * 179.71859 * 14 13 11 16 16 C 1.39744 * 120.00816 * 0.55125 * 15 14 13 17 17 C 1.47714 * 119.99509 * 179.73850 * 16 15 14 18 18 N 1.31289 * 126.38083 * 180.02562 * 17 16 15 19 19 N 1.28669 * 109.23271 * 179.97438 * 18 17 16 20 20 C 1.30479 * 109.51316 * 0.02562 * 19 18 17 21 21 O 1.34348 * 107.63816 * 359.75511 * 20 19 18 22 22 C 1.39744 * 120.01381 * 359.72436 * 16 15 14 23 23 C 1.37101 * 120.00963 * 359.97438 * 22 16 15 24 24 H 1.09005 * 109.47052 * 269.60591 * 1 2 3 25 25 H 1.08999 * 109.47506 * 29.61090 * 1 2 3 26 26 H 1.09002 * 109.46824 * 149.61091 * 1 2 3 27 27 H 0.96996 * 120.00216 * 179.97438 * 6 5 3 28 28 H 1.08000 * 120.00452 * 359.97438 * 14 13 11 29 29 H 1.08008 * 119.99952 * 180.29839 * 15 14 13 30 30 H 1.07999 * 126.18334 * 180.02562 * 20 19 18 31 31 H 1.08001 * 119.99232 * 180.02562 * 22 16 15 32 32 H 1.08001 * 120.00675 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 2.9695 1.3349 0.6862 5 6 1.7878 2.1963 -0.8836 6 7 2.3403 3.3838 -0.7839 7 14 0.5170 1.8661 -2.2123 8 1 -0.8200 2.3056 -1.7386 9 1 0.8787 2.6177 -3.4409 10 1 0.4823 0.4124 -2.5136 11 6 2.1389 -1.1671 -0.0005 12 8 1.5483 -2.2105 0.2039 13 6 3.5946 -1.1786 -0.2431 14 6 4.1971 -0.1213 -0.9314 15 6 5.5504 -0.1295 -1.1516 16 6 6.3257 -1.2000 -0.6981 17 6 7.7828 -1.2113 -0.9405 18 7 8.6262 -2.1478 -0.5726 19 7 9.8119 -1.8234 -0.9528 20 6 9.7722 -0.6761 -1.5728 21 8 8.4935 -0.2642 -1.5854 22 6 5.7230 -2.2598 -0.0152 23 6 4.3708 -2.2493 0.2108 24 1 -0.3633 -0.0071 1.0277 25 1 -0.3634 0.8934 -0.5078 26 1 -0.3633 -0.8865 -0.5199 27 1 2.0887 4.0891 -1.4004 28 1 3.5972 0.7038 -1.2861 29 1 6.0166 0.6896 -1.6791 30 1 10.6144 -0.1542 -2.0026 31 1 6.3226 -3.0868 0.3355 32 1 3.9050 -3.0682 0.7390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701274517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = 54.048457 kcal Electronic energy + Delta-G solvation = -20133.650227 eV Core-core repulsion = 16869.458216 eV Total energy + Delta-G solvation = -3264.192011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.12157 -39.67303 -37.85502 -36.17069 -35.19950 -32.63114 -32.19668 -30.74179 -29.79572 -26.87479 -25.44814 -24.19657 -23.87159 -21.82047 -21.71890 -19.48473 -18.10480 -17.76244 -17.25067 -16.51002 -16.22437 -15.73348 -15.19025 -14.77533 -14.50772 -13.88680 -13.68042 -13.05827 -12.94732 -12.84119 -12.75796 -12.44836 -12.16214 -11.93102 -11.77607 -11.65336 -11.12292 -11.06294 -10.69910 -10.45617 -10.17624 -10.10786 -9.39195 -8.90717 -8.65930 -8.26761 -7.90946 -6.68541 -4.39687 0.48154 1.65302 1.81529 2.30318 2.47252 2.91450 3.07430 3.11938 3.52537 3.89225 3.90587 4.19277 4.33637 4.46798 4.74200 5.01321 5.21715 5.28822 5.38028 5.51588 5.60451 5.77126 5.89355 5.96143 6.11265 6.18175 6.37916 6.42331 6.61105 6.78577 6.96563 7.13639 7.27562 7.83687 8.03273 8.23983 8.68102 9.04349 9.41046 10.38160 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.005333 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.403992 B = 5248.657709 C = 6120.732307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.462 5.462 3 C -0.343 4.343 4 H 0.108 0.892 5 C 0.063 3.937 6 N -0.855 5.855 7 Si 0.885 3.115 8 H -0.271 1.271 9 H -0.285 1.285 10 H -0.259 1.259 11 C 0.516 3.484 12 O -0.588 6.588 13 C -0.070 4.070 14 C -0.068 4.068 15 C -0.098 4.098 16 C -0.037 4.037 17 C 0.232 3.768 18 N -0.289 5.289 19 N -0.292 5.292 20 C 0.132 3.868 21 O -0.221 6.221 22 C -0.083 4.083 23 C -0.084 4.084 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.280 0.720 28 H 0.179 0.821 29 H 0.130 0.870 30 H 0.261 0.739 31 H 0.136 0.864 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 -2.755 -3.272 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.182 5.182 3 C -0.470 4.470 4 H 0.125 0.875 5 C -0.146 4.146 6 N -0.488 5.488 7 Si 0.712 3.288 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.183 1.183 11 C 0.306 3.694 12 O -0.473 6.473 13 C -0.074 4.074 14 C -0.086 4.086 15 C -0.118 4.118 16 C -0.039 4.039 17 C 0.025 3.975 18 N -0.136 5.136 19 N -0.138 5.138 20 C -0.098 4.098 21 O -0.100 6.100 22 C -0.102 4.102 23 C -0.103 4.103 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.196 0.804 29 H 0.148 0.852 30 H 0.276 0.724 31 H 0.154 0.846 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.839 -4.120 -2.719 9.264 hybrid contribution -0.775 1.458 -1.196 2.038 sum 7.065 -2.662 -3.915 8.504 Atomic orbital electron populations 1.21822 0.82816 1.00660 1.01235 1.43465 1.04436 1.05611 1.64723 1.19131 1.17789 0.89682 1.20422 0.87480 1.25560 0.97089 0.95017 0.96977 1.69632 1.41085 1.01791 1.36334 0.86747 0.81180 0.79729 0.81102 1.19759 1.21230 1.18321 1.18299 0.86888 0.83475 0.80693 1.90657 1.70184 1.32362 1.54144 1.20290 0.94235 0.94733 0.98122 1.22440 0.93896 0.98259 0.93986 1.21158 0.94463 0.96721 0.99417 1.17429 0.83018 0.98459 1.05029 1.25839 0.95704 0.83519 0.92443 1.74770 0.95135 1.23106 1.20631 1.74368 1.15346 1.11806 1.12270 1.29634 0.85147 0.94324 1.00738 1.84901 1.19980 1.45327 1.59781 1.20800 0.94656 0.97158 0.97587 1.21042 0.92369 0.98153 0.98715 0.92969 0.92685 0.91874 0.90967 0.80414 0.85219 0.72357 0.84621 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 8.83 59.85 0.53 2.12 16 2 N -0.46 -10.55 2.48 -123.37 -0.31 -10.85 16 3 C -0.34 -8.13 6.30 -15.02 -0.09 -8.23 16 4 H 0.11 2.73 7.53 -52.48 -0.40 2.34 16 5 C 0.06 1.48 4.74 -17.45 -0.08 1.40 16 6 N -0.85 -21.32 13.95 55.50 0.77 -20.55 16 7 Si 0.89 18.70 24.70 -169.99 -4.20 14.50 16 8 H -0.27 -5.57 6.94 56.52 0.39 -5.18 16 9 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.26 -5.53 6.80 56.52 0.38 -5.15 16 11 C 0.52 11.71 7.40 -12.45 -0.09 11.62 16 12 O -0.59 -14.28 16.29 5.26 0.09 -14.19 16 13 C -0.07 -1.40 5.62 -104.91 -0.59 -1.99 16 14 C -0.07 -1.30 8.18 -39.40 -0.32 -1.63 16 15 C -0.10 -1.64 9.68 -39.43 -0.38 -2.02 16 16 C -0.04 -0.60 5.88 -104.90 -0.62 -1.21 16 17 C 0.23 3.60 7.98 -13.91 -0.11 3.49 16 18 N -0.29 -4.67 11.91 32.05 0.38 -4.29 16 19 N -0.29 -4.19 12.22 29.46 0.36 -3.83 16 20 C 0.13 1.41 13.36 52.19 0.70 2.10 16 21 O -0.22 -2.98 10.65 4.11 0.04 -2.93 16 22 C -0.08 -1.30 9.66 -39.43 -0.38 -1.69 16 23 C -0.08 -1.46 9.55 -39.41 -0.38 -1.83 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 1.11 3.53 -51.93 -0.18 0.93 16 26 H 0.06 1.25 7.61 -51.93 -0.40 0.86 16 27 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.18 3.76 4.75 -52.49 -0.25 3.51 16 29 H 0.13 1.96 7.92 -52.48 -0.42 1.54 16 30 H 0.26 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.91 7.85 -52.49 -0.41 1.50 16 32 H 0.14 2.27 7.80 -52.49 -0.41 1.86 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -28.80 281.75 -2.90 -31.71 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.47 Total: 4.07 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.82 Total: 2.13 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 1.21 Total: -39.52 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.13 Total: -17.12 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.20 Total: 14.50 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.80 -2.90 -31.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701274517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.755 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds