Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36817 * 119.99483 * 2 1 4 4 H 1.08007 * 119.99933 * 132.80929 * 3 2 1 5 5 C 1.39071 * 120.00191 * 312.80740 * 3 2 1 6 6 N 1.31352 * 120.00130 * 172.31050 * 5 3 2 7 7 Si 1.86804 * 120.00222 * 352.30663 * 5 3 2 8 8 H 1.48493 * 109.46954 * 95.60262 * 7 5 3 9 9 H 1.48496 * 109.47180 * 215.60800 * 7 5 3 10 10 H 1.48505 * 109.46574 * 335.60537 * 7 5 3 11 11 C 1.34769 * 120.00040 * 180.02562 * 2 1 3 12 12 O 1.21621 * 120.00378 * 348.78041 * 11 2 1 13 13 C 1.47582 * 120.00025 * 169.05988 * 11 2 1 14 14 C 1.39813 * 120.00631 * 336.80024 * 13 11 2 15 15 C 1.37109 * 119.99198 * 179.71859 * 14 13 11 16 16 C 1.39744 * 120.00816 * 0.55125 * 15 14 13 17 17 C 1.47714 * 119.99509 * 179.73850 * 16 15 14 18 18 N 1.31289 * 126.38083 * 180.02562 * 17 16 15 19 19 N 1.28669 * 109.23271 * 179.97438 * 18 17 16 20 20 C 1.30479 * 109.51316 * 0.02562 * 19 18 17 21 21 O 1.34348 * 107.63816 * 359.75511 * 20 19 18 22 22 C 1.39744 * 120.01381 * 359.72436 * 16 15 14 23 23 C 1.37101 * 120.00963 * 359.97438 * 22 16 15 24 24 H 1.09005 * 109.47052 * 269.60591 * 1 2 3 25 25 H 1.08999 * 109.47506 * 29.61090 * 1 2 3 26 26 H 1.09002 * 109.46824 * 149.61091 * 1 2 3 27 27 H 0.96996 * 120.00216 * 179.97438 * 6 5 3 28 28 H 1.08000 * 120.00452 * 359.97438 * 14 13 11 29 29 H 1.08008 * 119.99952 * 180.29839 * 15 14 13 30 30 H 1.07999 * 126.18334 * 180.02562 * 20 19 18 31 31 H 1.08001 * 119.99232 * 180.02562 * 22 16 15 32 32 H 1.08001 * 120.00675 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 2.9695 1.3349 0.6862 5 6 1.7878 2.1963 -0.8836 6 7 2.3403 3.3838 -0.7839 7 14 0.5170 1.8661 -2.2123 8 1 -0.8200 2.3056 -1.7386 9 1 0.8787 2.6177 -3.4409 10 1 0.4823 0.4124 -2.5136 11 6 2.1389 -1.1671 -0.0005 12 8 1.5483 -2.2105 0.2039 13 6 3.5946 -1.1786 -0.2431 14 6 4.1971 -0.1213 -0.9314 15 6 5.5504 -0.1295 -1.1516 16 6 6.3257 -1.2000 -0.6981 17 6 7.7828 -1.2113 -0.9405 18 7 8.6262 -2.1478 -0.5726 19 7 9.8119 -1.8234 -0.9528 20 6 9.7722 -0.6761 -1.5728 21 8 8.4935 -0.2642 -1.5854 22 6 5.7230 -2.2598 -0.0152 23 6 4.3708 -2.2493 0.2108 24 1 -0.3633 -0.0071 1.0277 25 1 -0.3634 0.8934 -0.5078 26 1 -0.3633 -0.8865 -0.5199 27 1 2.0887 4.0891 -1.4004 28 1 3.5972 0.7038 -1.2861 29 1 6.0166 0.6896 -1.6791 30 1 10.6144 -0.1542 -2.0026 31 1 6.3226 -3.0868 0.3355 32 1 3.9050 -3.0682 0.7390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701274517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = 31.845369 kcal Electronic energy + Delta-G solvation = -20134.613026 eV Core-core repulsion = 16869.458216 eV Total energy + Delta-G solvation = -3265.154809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.18624 -41.27853 -39.38200 -37.24990 -37.00003 -34.03650 -33.90588 -32.12492 -31.05947 -28.46828 -27.18205 -25.54916 -24.96905 -23.14788 -23.03953 -21.17040 -19.63822 -19.01631 -18.32563 -18.22485 -17.39777 -17.21170 -16.49192 -16.41061 -16.13851 -15.33083 -15.15134 -14.68532 -14.54063 -14.40322 -14.26857 -13.72161 -13.52622 -13.42181 -13.23766 -12.99438 -12.81861 -12.30956 -12.22519 -11.96987 -11.79582 -11.38028 -11.16143 -10.67468 -10.04353 -9.72996 -9.58886 -8.51703 -6.26096 -0.78190 0.42062 0.52470 1.22689 1.28177 1.31400 1.37278 1.44020 1.93712 2.15875 2.54791 2.74282 2.85877 3.01897 3.54711 3.83017 3.91578 3.99395 4.10970 4.18310 4.29876 4.36641 4.52966 4.57684 4.70943 4.75856 4.79020 5.07760 5.23351 5.36181 5.37454 5.54670 5.81322 6.01005 6.17241 6.85935 7.17698 7.23973 7.62225 8.58357 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.005333 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.403992 B = 5248.657709 C = 6120.732307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.474 5.474 3 C -0.336 4.336 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.889 5.889 7 Si 0.930 3.070 8 H -0.258 1.258 9 H -0.283 1.283 10 H -0.265 1.265 11 C 0.512 3.488 12 O -0.609 6.609 13 C -0.101 4.101 14 C -0.074 4.074 15 C -0.095 4.095 16 C -0.024 4.024 17 C 0.213 3.787 18 N -0.301 5.301 19 N -0.331 5.331 20 C 0.171 3.829 21 O -0.225 6.225 22 C -0.075 4.075 23 C -0.077 4.077 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.284 0.716 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.320 0.680 31 H 0.156 0.844 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 -2.890 -4.169 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.194 5.194 3 C -0.463 4.463 4 H 0.098 0.902 5 C -0.171 4.171 6 N -0.524 5.524 7 Si 0.756 3.244 8 H -0.183 1.183 9 H -0.209 1.209 10 H -0.189 1.189 11 C 0.303 3.697 12 O -0.496 6.496 13 C -0.104 4.104 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.026 4.026 17 C 0.005 3.995 18 N -0.148 5.148 19 N -0.176 5.176 20 C -0.058 4.058 21 O -0.104 6.104 22 C -0.094 4.094 23 C -0.096 4.096 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.334 0.666 31 H 0.174 0.826 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.353 -4.256 -3.608 10.890 hybrid contribution -0.991 1.465 -0.921 1.994 sum 8.362 -2.791 -4.528 9.910 Atomic orbital electron populations 1.21931 0.81670 1.01083 1.02269 1.43584 1.05344 1.05343 1.65084 1.18802 1.17461 0.90076 1.20011 0.90155 1.25960 0.98410 0.94595 0.98098 1.69690 1.42642 1.02597 1.37469 0.86035 0.80015 0.79139 0.79208 1.18331 1.20916 1.18897 1.18740 0.88077 0.83086 0.79763 1.90621 1.71015 1.32884 1.55100 1.20219 0.93184 0.96451 1.00566 1.22153 0.94814 0.97555 0.94736 1.21208 0.93417 0.97458 0.99346 1.17492 0.83785 0.97817 1.03497 1.25546 0.95372 0.84452 0.94148 1.74719 0.95953 1.23550 1.20621 1.74338 1.14665 1.13970 1.14636 1.30978 0.85128 0.92698 0.97017 1.84927 1.20996 1.44950 1.59502 1.20964 0.93999 0.97602 0.96874 1.21115 0.92893 0.97377 0.98207 0.91701 0.92278 0.91331 0.90571 0.82575 0.83631 0.66553 0.82591 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.96 8.83 127.77 1.13 4.08 16 2 N -0.47 -21.86 2.48 -662.49 -1.64 -23.50 16 3 C -0.34 -16.29 6.30 84.12 0.53 -15.76 16 4 H 0.08 4.28 7.53 -2.91 -0.02 4.25 16 5 C 0.04 1.70 4.74 84.96 0.40 2.10 16 6 N -0.89 -44.85 13.95 21.68 0.30 -44.55 16 7 Si 0.93 38.15 24.70 68.60 1.69 39.85 16 8 H -0.26 -9.97 6.94 99.48 0.69 -9.28 16 9 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.26 -11.01 6.80 99.48 0.68 -10.34 16 11 C 0.51 23.57 7.40 86.71 0.64 24.22 16 12 O -0.61 -29.80 16.29 -4.10 -0.07 -29.87 16 13 C -0.10 -4.08 5.62 -20.05 -0.11 -4.20 16 14 C -0.07 -2.90 8.18 22.39 0.18 -2.72 16 15 C -0.09 -3.11 9.68 22.37 0.22 -2.90 16 16 C -0.02 -0.73 5.88 -20.04 -0.12 -0.85 16 17 C 0.21 6.17 7.98 87.28 0.70 6.87 16 18 N -0.30 -9.11 11.91 -166.32 -1.98 -11.09 16 19 N -0.33 -8.59 12.22 -175.19 -2.14 -10.74 16 20 C 0.17 2.95 13.36 130.44 1.74 4.69 16 21 O -0.23 -5.36 10.65 -8.20 -0.09 -5.44 16 22 C -0.08 -2.28 9.66 22.37 0.22 -2.06 16 23 C -0.08 -2.65 9.55 22.38 0.21 -2.43 16 24 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.06 2.33 3.53 -2.39 -0.01 2.32 16 26 H 0.07 2.69 7.61 -2.39 -0.02 2.67 16 27 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 28 H 0.16 6.81 4.75 -2.91 -0.01 6.80 16 29 H 0.15 4.24 7.92 -2.91 -0.02 4.21 16 30 H 0.32 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.16 4.09 7.85 -2.91 -0.02 4.07 16 32 H 0.14 4.70 7.80 -2.91 -0.02 4.67 16 Total: -1.00 -62.70 281.75 2.95 -59.75 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.13 Total: 14.55 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.74 Total: 11.04 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -5.46 Total: -89.88 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.15 Total: -35.31 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.69 Total: 39.85 kcal Total: -62.70 2.95 -59.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701274517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.596 kcal (2) G-P(sol) polarization free energy of solvation -62.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds