Wall clock time and date at job start Mon Mar 30 2020 01:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.27933 * 118.23596 * 2 1 4 4 C 1.31185 * 124.23196 * 180.02562 * 3 2 1 5 5 C 1.47474 * 120.39953 * 179.97438 * 4 3 2 6 6 O 1.21633 * 120.00225 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99537 * 359.97438 * 5 4 3 8 8 C 1.36790 * 119.99744 * 179.72251 * 7 5 4 9 9 H 1.08001 * 120.00231 * 0.27749 * 8 7 5 10 10 C 1.39084 * 120.00257 * 180.27633 * 8 7 5 11 11 N 1.31344 * 119.99711 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00382 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46986 * 90.00030 * 12 10 8 14 14 H 1.48499 * 109.47352 * 210.00184 * 12 10 8 15 15 H 1.48506 * 109.46749 * 330.00289 * 12 10 8 16 16 C 1.47216 * 119.20477 * 0.25132 * 4 3 2 17 17 C 1.39044 * 122.79390 * 180.27191 * 16 4 3 18 18 C 1.37893 * 119.39180 * 179.71745 * 17 16 4 19 19 C 1.38864 * 120.79883 * 359.73713 * 18 17 16 20 20 C 1.37878 * 120.73193 * 359.97438 * 19 18 17 21 21 C 1.39129 * 119.34325 * 0.02562 * 20 19 18 22 22 C 1.34890 * 118.23555 * 179.97438 * 2 1 3 23 23 O 1.21739 * 120.77143 * 359.97438 * 22 2 1 24 24 H 1.09005 * 109.46907 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47362 * 120.00018 * 1 2 3 26 26 H 1.08995 * 109.46985 * 240.00442 * 1 2 3 27 27 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 28 28 H 0.96999 * 119.99905 * 180.02562 * 11 10 8 29 29 H 1.07995 * 120.30415 * 359.43366 * 17 16 4 30 30 H 1.08000 * 119.60590 * 179.75470 * 18 17 16 31 31 H 1.08000 * 119.63515 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.32502 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.0703 1.1271 0.0000 4 6 3.3750 1.2641 -0.0005 5 6 3.9843 2.6071 -0.0010 6 8 5.1948 2.7258 -0.0010 7 7 3.1997 3.7030 -0.0015 8 6 3.7648 4.9487 0.0037 9 1 4.8397 5.0541 0.0038 10 6 2.9553 6.0796 0.0090 11 7 1.6481 5.9515 0.0095 12 14 3.7269 7.7808 0.0155 13 1 3.9303 8.2373 -1.3829 14 1 2.8278 8.7296 0.7201 15 1 5.0362 7.7277 0.7143 16 6 4.2236 0.0612 -0.0067 17 6 5.6128 0.1196 -0.0021 18 6 6.3394 -1.0524 -0.0025 19 6 5.7003 -2.2852 -0.0021 20 6 4.3239 -2.3653 -0.0006 21 6 3.5728 -1.1941 -0.0001 22 6 2.1032 -1.1884 0.0005 23 8 1.4764 -2.2320 0.0015 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3633 -0.5137 0.8900 27 1 2.2343 3.6084 -0.0012 28 1 1.0835 6.7402 0.0128 29 1 6.1182 1.0740 -0.0028 30 1 7.4186 -1.0111 -0.0030 31 1 6.2879 -3.1914 -0.0020 32 1 3.8336 -3.3276 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749608921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:27 Heat of formation + Delta-G solvation = 6.397538 kcal Electronic energy + Delta-G solvation = -20276.074698 eV Core-core repulsion = 17009.816388 eV Total energy + Delta-G solvation = -3266.258310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46123 -38.64988 -38.14043 -37.25423 -34.27345 -33.13499 -31.56606 -31.13037 -30.23780 -27.61954 -25.80056 -24.51168 -23.37845 -22.11628 -20.36076 -18.65178 -18.29543 -17.93243 -16.84901 -16.37177 -15.80214 -15.40792 -14.84476 -14.45018 -14.16387 -13.98711 -13.78233 -13.72101 -13.33575 -12.73204 -12.47304 -12.36904 -12.00773 -11.95345 -11.76088 -11.47219 -11.23014 -10.95260 -10.52848 -10.42958 -9.77164 -9.49207 -9.39038 -8.96868 -8.55572 -8.24685 -7.88214 -6.70617 -4.01125 0.75030 0.91194 2.00115 2.53756 2.86760 3.10237 3.15303 3.20592 3.82306 3.92258 4.12811 4.29418 4.46806 4.83460 4.95855 5.14771 5.19288 5.25101 5.37473 5.38027 5.51800 5.63658 5.69512 5.76836 5.99162 6.15762 6.31228 6.36802 6.58483 6.68969 7.02484 7.28920 7.74508 7.81743 8.34573 8.60490 8.90137 9.28455 9.82903 10.44472 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.005545 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.598635 B = 5047.988604 C = 6255.433110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.367 5.367 3 N -0.240 5.240 4 C 0.095 3.905 5 C 0.481 3.519 6 O -0.591 6.591 7 N -0.511 5.511 8 C -0.292 4.292 9 H 0.114 0.886 10 C 0.028 3.972 11 N -0.872 5.872 12 Si 0.938 3.062 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.265 1.265 16 C -0.027 4.027 17 C -0.088 4.088 18 C -0.099 4.099 19 C -0.125 4.125 20 C -0.064 4.064 21 C -0.144 4.144 22 C 0.508 3.492 23 O -0.526 6.526 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.404 0.596 28 H 0.279 0.721 29 H 0.179 0.821 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -10.103 -0.007 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.186 5.186 3 N -0.062 5.062 4 C -0.084 4.084 5 C 0.267 3.733 6 O -0.478 6.478 7 N -0.144 5.144 8 C -0.424 4.424 9 H 0.131 0.869 10 C -0.178 4.178 11 N -0.511 5.511 12 Si 0.764 3.236 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.189 1.189 16 C -0.031 4.031 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.145 4.145 20 C -0.083 4.083 21 C -0.150 4.150 22 C 0.302 3.698 23 O -0.403 6.403 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.239 0.761 28 H 0.089 0.911 29 H 0.196 0.804 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.878 -10.069 -0.002 10.107 hybrid contribution 0.115 0.097 -0.010 0.150 sum 0.993 -9.972 -0.011 10.021 Atomic orbital electron populations 1.22017 0.74555 1.05070 1.03343 1.45920 1.09011 1.01631 1.62053 1.70515 1.12717 1.10381 1.12633 1.23213 0.86534 0.95664 1.02966 1.16507 0.86528 0.81457 0.88770 1.90454 1.12929 1.84361 1.60048 1.41878 1.09892 1.04745 1.57929 1.19961 0.94798 0.81089 1.46536 0.86860 1.25511 0.95211 1.00935 0.96192 1.69613 1.03395 1.32134 1.45961 0.85723 0.79102 0.80018 0.78758 1.19954 1.20596 1.18911 1.19492 0.95009 0.90643 0.97987 1.22266 0.92459 1.01327 0.94656 1.21522 1.00539 0.92139 0.97537 1.21253 0.93996 0.98224 1.00978 1.20851 0.93564 0.96996 0.96880 1.19971 0.92110 0.94606 1.08318 1.19049 0.88580 0.83985 0.78172 1.90803 1.68617 1.30583 1.50277 0.88012 0.90430 0.90420 0.76075 0.91062 0.80426 0.85159 0.85359 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.13 59.85 0.61 1.82 16 2 N -0.37 -6.48 3.62 -68.28 -0.25 -6.73 16 3 N -0.24 -4.69 9.88 34.50 0.34 -4.35 16 4 C 0.09 1.97 7.03 -80.74 -0.57 1.40 16 5 C 0.48 11.39 7.74 -12.50 -0.10 11.29 16 6 O -0.59 -14.76 13.26 5.25 0.07 -14.69 16 7 N -0.51 -12.68 5.27 -11.95 -0.06 -12.75 16 8 C -0.29 -7.59 9.68 -15.03 -0.15 -7.73 16 9 H 0.11 3.00 7.15 -52.49 -0.38 2.62 16 10 C 0.03 0.68 5.50 -17.45 -0.10 0.59 16 11 N -0.87 -22.15 13.05 55.50 0.72 -21.43 16 12 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 C -0.03 -0.51 5.90 -104.75 -0.62 -1.13 16 17 C -0.09 -1.49 9.36 -39.41 -0.37 -1.86 16 18 C -0.10 -1.31 10.01 -39.48 -0.40 -1.71 16 19 C -0.13 -1.54 10.01 -39.48 -0.40 -1.94 16 20 C -0.06 -0.93 9.70 -39.38 -0.38 -1.31 16 21 C -0.14 -2.53 5.90 -104.83 -0.62 -3.15 16 22 C 0.51 9.31 7.68 -12.68 -0.10 9.21 16 23 O -0.53 -10.01 16.62 5.15 0.09 -9.92 16 24 H 0.10 1.25 8.02 -51.93 -0.42 0.83 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.40 9.87 7.25 -40.82 -0.30 9.57 16 28 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.18 3.33 5.22 -52.49 -0.27 3.06 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.76 7.87 -52.49 -0.41 1.35 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -29.32 287.45 -5.56 -34.88 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -2.60 Total: 10.91 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.18 Total: 5.48 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.75 Total: -45.25 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.16 Total: -24.62 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.32 -5.56 -34.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.277 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds