Wall clock time and date at job start Mon Mar 30 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46688 * 2 1 4 4 C 1.50699 * 109.47306 * 240.00335 * 2 1 3 5 5 H 1.07991 * 119.99941 * 275.00061 * 4 2 1 6 6 C 1.37874 * 119.99827 * 94.99374 * 4 2 1 7 7 N 1.31518 * 119.99853 * 184.91474 * 6 4 2 8 8 Si 1.86801 * 120.00329 * 4.91586 * 6 4 2 9 9 H 1.48498 * 109.47255 * 84.83131 * 8 6 4 10 10 H 1.48497 * 109.47276 * 204.83342 * 8 6 4 11 11 H 1.48507 * 109.47029 * 324.83214 * 8 6 4 12 12 O 1.45197 * 109.47085 * 120.00077 * 2 1 3 13 13 C 1.34714 * 116.99870 * 270.00376 * 12 2 1 14 14 O 1.21469 * 120.00197 * 359.97438 * 13 12 2 15 15 C 1.47733 * 119.99405 * 180.02562 * 13 12 2 16 16 C 1.40636 * 120.28646 * 359.97438 * 15 13 12 17 17 N 1.30807 * 121.51010 * 180.02562 * 16 15 13 18 18 C 1.33766 * 121.80929 * 359.97438 * 17 16 15 19 19 N 1.33895 * 120.60956 * 180.02562 * 18 17 16 20 20 C 1.31333 * 119.84616 * 180.02562 * 19 18 17 21 21 C 1.39770 * 120.77500 * 359.93263 * 20 19 18 22 22 N 1.31301 * 120.55242 * 0.04670 * 21 20 19 23 23 C 1.33663 * 119.70914 * 359.97438 * 22 21 20 24 24 C 1.38970 * 120.28101 * 179.97438 * 15 13 12 25 25 H 1.08997 * 109.47473 * 295.02796 * 1 2 3 26 26 H 1.08993 * 109.47170 * 55.03315 * 1 2 3 27 27 H 1.09003 * 109.46562 * 175.03246 * 1 2 3 28 28 H 0.97003 * 119.99463 * 179.97438 * 7 6 4 29 29 H 1.07989 * 119.24684 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.61295 * 179.97438 * 20 19 18 31 31 H 1.07996 * 119.71918 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.99815 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7853 -1.2291 6 6 2.3602 0.0123 -2.3580 7 7 2.7060 -0.6129 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5988 2.3952 -1.7822 10 1 2.1054 2.3992 -3.6927 11 1 1.1983 2.3275 -1.4449 12 8 2.0141 -0.6845 1.1855 13 6 2.2178 0.0667 2.2851 14 8 1.9977 1.2609 2.2542 15 6 2.7101 -0.5618 3.5281 16 6 2.9674 -1.9438 3.5703 17 7 3.4033 -2.5251 4.6581 18 6 3.6269 -1.8379 5.7837 19 7 4.0736 -2.4574 6.8834 20 6 4.2876 -1.7680 7.9806 21 6 4.0557 -0.3901 8.0161 22 7 3.6180 0.2407 6.9510 23 6 3.3929 -0.4406 5.8234 24 6 2.9229 0.2075 4.6657 25 1 -0.3634 0.4347 0.9311 26 1 -0.3633 0.5889 -0.8421 27 1 -0.3632 -1.0239 -0.0890 28 1 2.9362 -0.1045 -4.2556 29 1 2.8007 -2.5388 2.6847 30 1 4.6476 -2.2716 8.8656 31 1 4.2378 0.1601 8.9274 32 1 2.7340 1.2709 4.6613 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760214649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:18 Heat of formation + Delta-G solvation = 0.760161 kcal Electronic energy + Delta-G solvation = -19727.855727 eV Core-core repulsion = 16461.352962 eV Total energy + Delta-G solvation = -3266.502765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93858 -39.93103 -38.32206 -36.10587 -35.26537 -33.21288 -32.22127 -31.59248 -30.53887 -26.57225 -25.50463 -25.36769 -23.21360 -22.47988 -20.54978 -19.36630 -18.57314 -18.10040 -17.18183 -16.42402 -16.05104 -15.89547 -15.33784 -15.20321 -15.04044 -14.39647 -13.63366 -13.18596 -13.09011 -12.94411 -12.70883 -12.50249 -12.22174 -12.05985 -11.82753 -11.23357 -11.07911 -10.97257 -10.79743 -10.26592 -9.92503 -9.67834 -9.60032 -9.44886 -9.24525 -9.05757 -8.79888 -6.35163 -4.40167 -0.40348 -0.04755 1.41855 2.13524 2.96459 3.05503 3.17348 3.24224 3.25355 3.28765 3.67334 3.75568 3.76719 4.19302 4.30184 4.41094 4.53251 4.77303 4.78653 4.91727 5.02678 5.42554 5.60697 5.71278 6.04969 6.10063 6.32915 6.40259 6.56240 6.61149 7.04888 7.10607 7.16009 7.38633 7.63071 8.06123 8.41085 8.74580 9.22877 10.75747 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.037132 B = 0.004088 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.875750 B = 6848.191627 C = 7149.701060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.049 0.951 4 C -0.521 4.521 5 H 0.088 0.912 6 C 0.084 3.916 7 N -0.878 5.878 8 Si 0.868 3.132 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.338 6.338 13 C 0.501 3.499 14 O -0.511 6.511 15 C -0.152 4.152 16 C 0.216 3.784 17 N -0.462 5.462 18 C 0.276 3.724 19 N -0.419 5.419 20 C 0.112 3.888 21 C 0.068 3.932 22 N -0.404 5.404 23 C 0.014 3.986 24 C 0.036 3.964 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.272 0.728 29 H 0.195 0.805 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 0.453 20.897 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.067 0.933 4 C -0.558 4.558 5 H 0.106 0.894 6 C -0.121 4.121 7 N -0.514 5.514 8 Si 0.694 3.306 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.184 1.184 12 O -0.254 6.254 13 C 0.344 3.656 14 O -0.402 6.402 15 C -0.158 4.158 16 C 0.039 3.961 17 N -0.171 5.171 18 C 0.036 3.964 19 N -0.134 5.134 20 C -0.067 4.067 21 C -0.109 4.109 22 N -0.118 5.118 23 C -0.112 4.112 24 C 0.009 3.991 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.212 0.788 30 H 0.201 0.799 31 H 0.200 0.800 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.690 -0.116 20.465 20.535 hybrid contribution -0.089 2.001 -0.065 2.004 sum 1.601 1.886 20.400 20.549 Atomic orbital electron populations 1.22253 0.97186 1.01875 0.99848 1.21127 0.91656 0.94223 0.79975 0.93289 1.20779 1.45728 0.96432 0.92814 0.89379 1.24911 0.93392 0.98641 0.95186 1.69849 1.43472 1.36336 1.01706 0.86977 0.79977 0.85713 0.77921 1.19502 1.20598 1.18435 1.86733 1.75319 1.43033 1.20273 1.20654 0.75195 0.85337 0.84410 1.90793 1.48778 1.15987 1.84638 1.20648 1.05340 0.95869 0.93913 1.23732 0.85799 0.91045 0.95488 1.67632 1.13347 1.38269 0.97856 1.20193 0.95414 0.87955 0.92830 1.68358 1.08768 1.38154 0.98101 1.24336 0.93195 0.92693 0.96499 1.24203 0.95330 0.93673 0.97738 1.68569 1.06896 1.38040 0.98303 1.20131 1.03554 0.92945 0.94619 1.21826 0.87614 1.01644 0.88008 0.95064 0.91758 0.92147 0.91835 0.78844 0.79899 0.80046 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.53 37.16 0.35 -2.89 16 2 C 0.18 4.35 2.23 -27.88 -0.06 4.29 16 3 H 0.05 1.22 4.31 -51.93 -0.22 1.00 16 4 C -0.52 -14.14 9.25 -34.44 -0.32 -14.46 16 5 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 7 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 8 Si 0.87 20.75 26.99 -169.99 -4.59 16.16 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.26 -6.03 6.82 56.52 0.39 -5.64 16 12 O -0.34 -7.20 9.11 -40.53 -0.37 -7.57 16 13 C 0.50 9.58 7.88 34.61 0.27 9.86 16 14 O -0.51 -10.83 15.64 -19.24 -0.30 -11.13 16 15 C -0.15 -2.35 5.88 -104.84 -0.62 -2.97 16 16 C 0.22 3.13 10.76 -17.08 -0.18 2.95 16 17 N -0.46 -7.09 10.39 -12.27 -0.13 -7.22 16 18 C 0.28 3.99 7.60 -157.59 -1.20 2.80 16 19 N -0.42 -5.30 10.55 -12.38 -0.13 -5.43 16 20 C 0.11 0.87 11.21 -17.19 -0.19 0.68 16 21 C 0.07 0.51 11.22 -17.21 -0.19 0.31 16 22 N -0.40 -4.67 10.46 -10.77 -0.11 -4.78 16 23 C 0.01 0.19 6.59 -84.79 -0.56 -0.37 16 24 C 0.04 0.51 9.68 -38.36 -0.37 0.14 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.19 2.55 7.59 -52.49 -0.40 2.15 16 30 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.18 0.53 8.06 -52.49 -0.42 0.10 16 32 H 0.17 2.20 7.70 -52.49 -0.40 1.80 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -32.97 291.95 -6.34 -39.31 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.71 Total: -1.65 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.17 Total: 2.54 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.40 Total: -42.06 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.67 Total: -18.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.59 Total: 16.16 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.97 -6.34 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760214649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.066 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds