Wall clock time and date at job start Mon Mar 30 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46688 * 2 1 4 4 C 1.50699 * 109.47306 * 240.00335 * 2 1 3 5 5 H 1.07991 * 119.99941 * 275.00061 * 4 2 1 6 6 C 1.37874 * 119.99827 * 94.99374 * 4 2 1 7 7 N 1.31518 * 119.99853 * 184.91474 * 6 4 2 8 8 Si 1.86801 * 120.00329 * 4.91586 * 6 4 2 9 9 H 1.48498 * 109.47255 * 84.83131 * 8 6 4 10 10 H 1.48497 * 109.47276 * 204.83342 * 8 6 4 11 11 H 1.48507 * 109.47029 * 324.83214 * 8 6 4 12 12 O 1.45197 * 109.47085 * 120.00077 * 2 1 3 13 13 C 1.34714 * 116.99870 * 270.00376 * 12 2 1 14 14 O 1.21469 * 120.00197 * 359.97438 * 13 12 2 15 15 C 1.47733 * 119.99405 * 180.02562 * 13 12 2 16 16 C 1.40636 * 120.28646 * 359.97438 * 15 13 12 17 17 N 1.30807 * 121.51010 * 180.02562 * 16 15 13 18 18 C 1.33766 * 121.80929 * 359.97438 * 17 16 15 19 19 N 1.33895 * 120.60956 * 180.02562 * 18 17 16 20 20 C 1.31333 * 119.84616 * 180.02562 * 19 18 17 21 21 C 1.39770 * 120.77500 * 359.93263 * 20 19 18 22 22 N 1.31301 * 120.55242 * 0.04670 * 21 20 19 23 23 C 1.33663 * 119.70914 * 359.97438 * 22 21 20 24 24 C 1.38970 * 120.28101 * 179.97438 * 15 13 12 25 25 H 1.08997 * 109.47473 * 295.02796 * 1 2 3 26 26 H 1.08993 * 109.47170 * 55.03315 * 1 2 3 27 27 H 1.09003 * 109.46562 * 175.03246 * 1 2 3 28 28 H 0.97003 * 119.99463 * 179.97438 * 7 6 4 29 29 H 1.07989 * 119.24684 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.61295 * 179.97438 * 20 19 18 31 31 H 1.07996 * 119.71918 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.99815 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7853 -1.2291 6 6 2.3602 0.0123 -2.3580 7 7 2.7060 -0.6129 -3.4622 8 14 2.3133 1.8792 -2.3174 9 1 3.5988 2.3952 -1.7822 10 1 2.1054 2.3992 -3.6927 11 1 1.1983 2.3275 -1.4449 12 8 2.0141 -0.6845 1.1855 13 6 2.2178 0.0667 2.2851 14 8 1.9977 1.2609 2.2542 15 6 2.7101 -0.5618 3.5281 16 6 2.9674 -1.9438 3.5703 17 7 3.4033 -2.5251 4.6581 18 6 3.6269 -1.8379 5.7837 19 7 4.0736 -2.4574 6.8834 20 6 4.2876 -1.7680 7.9806 21 6 4.0557 -0.3901 8.0161 22 7 3.6180 0.2407 6.9510 23 6 3.3929 -0.4406 5.8234 24 6 2.9229 0.2075 4.6657 25 1 -0.3634 0.4347 0.9311 26 1 -0.3633 0.5889 -0.8421 27 1 -0.3632 -1.0239 -0.0890 28 1 2.9362 -0.1045 -4.2556 29 1 2.8007 -2.5388 2.6847 30 1 4.6476 -2.2716 8.8656 31 1 4.2378 0.1601 8.9274 32 1 2.7340 1.2709 4.6613 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760214649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:18 Heat of formation + Delta-G solvation = -22.377887 kcal Electronic energy + Delta-G solvation = -19728.859068 eV Core-core repulsion = 16461.352962 eV Total energy + Delta-G solvation = -3267.506106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.87488 -41.43591 -39.40127 -37.75248 -36.18993 -35.20616 -33.37288 -32.78457 -32.11377 -27.61834 -27.41084 -26.36773 -24.32812 -23.79264 -22.15459 -20.62511 -19.77657 -19.23350 -18.92877 -17.90895 -17.39191 -17.12720 -16.57555 -16.35244 -16.11155 -15.81158 -14.92785 -14.65008 -14.59573 -14.37998 -14.01394 -13.98161 -13.65888 -13.07323 -13.06152 -12.92300 -12.88871 -12.60225 -12.19372 -11.92568 -11.59575 -11.44445 -11.21857 -10.88408 -10.68017 -10.38490 -9.96633 -8.46759 -6.56964 -1.36568 -0.97108 0.44373 1.06447 1.25814 1.30783 1.40106 1.58079 1.81560 2.20045 2.34826 2.74218 2.78064 2.84552 2.96721 3.33276 3.45380 3.56556 3.74299 3.93606 4.16648 4.24956 4.31841 4.54950 4.58140 4.64180 4.80522 4.87597 5.21234 5.31763 5.36330 5.50034 5.77062 6.09531 6.27275 6.52743 6.66922 6.72881 7.10227 8.68210 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.037132 B = 0.004088 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.875750 B = 6848.191627 C = 7149.701060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.183 3.817 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.053 0.947 6 C 0.037 3.963 7 N -0.921 5.921 8 Si 0.925 3.075 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.247 1.247 12 O -0.346 6.346 13 C 0.506 3.494 14 O -0.534 6.534 15 C -0.168 4.168 16 C 0.212 3.788 17 N -0.482 5.482 18 C 0.259 3.741 19 N -0.458 5.458 20 C 0.140 3.860 21 C 0.094 3.906 22 N -0.429 5.429 23 C 0.000 4.000 24 C 0.048 3.952 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.276 0.724 29 H 0.196 0.804 30 H 0.240 0.760 31 H 0.239 0.761 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 1.681 24.719 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.165 4.165 7 N -0.559 5.559 8 Si 0.748 3.252 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.171 1.171 12 O -0.261 6.261 13 C 0.351 3.649 14 O -0.426 6.426 15 C -0.173 4.173 16 C 0.037 3.963 17 N -0.191 5.191 18 C 0.021 3.979 19 N -0.174 5.174 20 C -0.040 4.040 21 C -0.084 4.084 22 N -0.144 5.144 23 C -0.123 4.123 24 C 0.021 3.979 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.213 0.787 30 H 0.256 0.744 31 H 0.255 0.745 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.083 1.106 24.255 24.369 hybrid contribution -0.086 1.523 -0.818 1.731 sum 1.997 2.628 23.437 23.668 Atomic orbital electron populations 1.22167 0.95038 1.02525 1.00935 1.20938 0.93186 0.93141 0.79709 0.94109 1.20913 1.45952 0.95131 0.94799 0.92893 1.25647 0.93009 1.03187 0.94648 1.69957 1.45098 1.38280 1.02550 0.86067 0.80282 0.80157 0.78691 1.19463 1.19280 1.17071 1.86671 1.75859 1.43058 1.20544 1.21078 0.74277 0.84998 0.84537 1.90766 1.49995 1.16825 1.84990 1.20269 1.08029 0.96286 0.92730 1.23651 0.86245 0.90706 0.95715 1.67604 1.14013 1.38953 0.98526 1.20412 0.95831 0.88502 0.93204 1.68452 1.10683 1.39334 0.98898 1.25418 0.89214 0.93063 0.96314 1.25258 0.91181 0.93984 0.97989 1.68658 1.08642 1.38435 0.98655 1.20037 1.04337 0.92635 0.95336 1.21897 0.86478 1.01668 0.87889 0.93214 0.91458 0.91668 0.91427 0.78685 0.74405 0.74502 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.23 9.53 71.98 0.69 -5.55 16 2 C 0.18 8.86 2.23 29.85 0.07 8.93 16 3 H 0.04 2.04 4.31 -2.39 -0.01 2.03 16 4 C -0.53 -29.85 9.25 25.60 0.24 -29.61 16 5 H 0.05 3.26 8.06 -2.92 -0.02 3.24 16 6 C 0.04 2.05 5.47 84.65 0.46 2.52 16 7 N -0.92 -54.85 13.96 21.45 0.30 -54.55 16 8 Si 0.93 42.94 26.99 68.60 1.85 44.79 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.25 -10.87 6.82 99.48 0.68 -10.19 16 12 O -0.35 -15.16 9.11 -56.24 -0.51 -15.67 16 13 C 0.51 19.76 7.88 70.33 0.55 20.31 16 14 O -0.53 -22.73 15.64 19.94 0.31 -22.42 16 15 C -0.17 -5.32 5.88 -20.01 -0.12 -5.44 16 16 C 0.21 6.43 10.76 85.43 0.92 7.35 16 17 N -0.48 -15.03 10.39 -192.73 -2.00 -17.03 16 18 C 0.26 7.27 7.60 134.96 1.03 8.30 16 19 N -0.46 -10.44 10.55 -193.09 -2.04 -12.48 16 20 C 0.14 1.46 11.21 85.14 0.95 2.41 16 21 C 0.09 0.91 11.22 85.14 0.96 1.87 16 22 N -0.43 -8.60 10.46 -187.99 -1.97 -10.57 16 23 C 0.00 0.01 6.59 40.34 0.27 0.28 16 24 C 0.05 1.33 9.68 23.06 0.22 1.56 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.20 5.54 7.59 -2.92 -0.02 5.52 16 30 H 0.24 -0.31 8.06 -2.91 -0.02 -0.33 16 31 H 0.24 -0.43 8.06 -2.91 -0.02 -0.46 16 32 H 0.17 4.49 7.70 -2.91 -0.02 4.47 16 Total: -1.00 -75.24 291.95 3.32 -71.93 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.14 Total: 3.09 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.23 Total: 12.91 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -5.71 Total: -94.63 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.20 Total: -38.09 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.85 Total: 44.79 kcal Total: -75.24 3.32 -71.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760214649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds