Wall clock time and date at job start Mon Mar 30 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34711 * 116.99935 * 90.00354 * 12 2 1 14 14 O 1.21474 * 120.00030 * 359.97438 * 13 12 2 15 15 C 1.47726 * 120.00151 * 179.97438 * 13 12 2 16 16 C 1.40643 * 120.28151 * 359.72326 * 15 13 12 17 17 N 1.30806 * 121.51068 * 179.72784 * 16 15 13 18 18 C 1.33771 * 121.80542 * 0.51511 * 17 16 15 19 19 N 1.33884 * 120.60044 * 179.72093 * 18 17 16 20 20 C 1.31339 * 119.84442 * 180.09036 * 19 18 17 21 21 C 1.39764 * 120.77016 * 359.95197 * 20 19 18 22 22 N 1.31301 * 120.55987 * 0.04714 * 21 20 19 23 23 C 1.33670 * 119.70848 * 359.97438 * 22 21 20 24 24 C 1.38967 * 120.28617 * 179.97438 * 15 13 12 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.08000 * 119.24442 * 359.97438 * 16 15 13 30 30 H 1.08004 * 119.61396 * 179.97438 * 20 19 18 31 31 H 1.08006 * 119.71754 * 180.02562 * 21 20 19 32 32 H 1.08000 * 121.00092 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.8119 -1.1214 4.0046 10 1 1.8378 -0.4118 5.2205 11 1 1.8268 -2.5143 4.0117 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0665 -2.2850 14 8 1.9970 1.2606 -2.2544 15 6 2.7102 -0.5619 -3.5280 16 6 2.9734 -1.9429 -3.5684 17 7 3.4049 -2.5251 -4.6574 18 6 3.6273 -1.8380 -5.7834 19 7 4.0743 -2.4576 -6.8828 20 6 4.2894 -1.7682 -7.9798 21 6 4.0561 -0.3906 -8.0159 22 7 3.6177 0.2403 -6.9512 23 6 3.3922 -0.4409 -5.8234 24 6 2.9221 0.2072 -4.6658 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7218 1.1708 3.4843 29 1 2.8119 -2.5370 -2.6810 30 1 4.6504 -2.2717 -8.8645 31 1 4.2383 0.1596 -8.9273 32 1 2.7317 1.2703 -4.6621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760214650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:21 Heat of formation + Delta-G solvation = -22.256036 kcal Electronic energy + Delta-G solvation = -19642.061483 eV Core-core repulsion = 16374.560661 eV Total energy + Delta-G solvation = -3267.500822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.87139 -41.38943 -39.38579 -37.72075 -36.18733 -35.35714 -33.31257 -32.54946 -31.52677 -27.60817 -27.38632 -26.36159 -24.36053 -23.83461 -22.30645 -20.53234 -19.62740 -19.17976 -18.65923 -17.75635 -17.29725 -17.09169 -16.53157 -16.48392 -16.14759 -15.80820 -14.99613 -14.60981 -14.35130 -14.08848 -13.98763 -13.84167 -13.27884 -13.07594 -12.99911 -12.88582 -12.80588 -12.39649 -12.19712 -12.10454 -11.65366 -11.52010 -11.02676 -10.68610 -10.58952 -10.38124 -9.96609 -8.28406 -6.45020 -1.36374 -0.96771 0.44858 1.07903 1.43185 1.47614 1.53814 1.66158 1.82972 2.34105 2.40314 2.74359 2.78359 2.93019 3.03225 3.33441 3.46445 3.58142 3.74642 3.94245 4.22449 4.32260 4.51373 4.58913 4.78345 4.80879 4.82349 5.09617 5.21676 5.47222 5.60322 5.76934 5.84751 6.01092 6.27616 6.55398 6.68386 6.79266 7.25865 8.79233 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.040526 B = 0.003762 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.754160 B = 7441.665785 C = 7869.347709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.219 3.781 3 H 0.013 0.987 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.263 1.263 12 O -0.347 6.347 13 C 0.505 3.495 14 O -0.536 6.536 15 C -0.166 4.166 16 C 0.214 3.786 17 N -0.479 5.479 18 C 0.259 3.741 19 N -0.457 5.457 20 C 0.140 3.860 21 C 0.094 3.906 22 N -0.431 5.431 23 C 0.001 3.999 24 C 0.046 3.954 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.025 0.975 28 H 0.271 0.729 29 H 0.199 0.801 30 H 0.241 0.759 31 H 0.239 0.761 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -4.187 -21.189 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.166 3.834 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.188 1.188 12 O -0.263 6.263 13 C 0.350 3.650 14 O -0.428 6.428 15 C -0.171 4.171 16 C 0.038 3.962 17 N -0.189 5.189 18 C 0.021 3.979 19 N -0.172 5.172 20 C -0.040 4.040 21 C -0.084 4.084 22 N -0.145 5.145 23 C -0.123 4.123 24 C 0.019 3.981 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.216 0.784 30 H 0.257 0.743 31 H 0.255 0.745 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.016 -4.646 -20.796 22.142 hybrid contribution -0.204 1.018 1.146 1.546 sum 5.812 -3.628 -19.651 20.811 Atomic orbital electron populations 1.22016 0.96513 1.00725 1.00984 1.20474 0.92166 0.92331 0.78459 0.96871 1.21277 1.33640 1.14035 0.89663 0.90931 1.25800 0.94709 0.95618 1.02087 1.70008 1.36750 1.23375 1.25337 0.85242 0.78774 0.78675 0.76794 1.19376 1.20436 1.18752 1.86509 1.75947 1.42911 1.20929 1.21087 0.74369 0.84912 0.84647 1.90783 1.49837 1.17209 1.85009 1.20249 1.07900 0.96424 0.92514 1.23666 0.86214 0.90463 0.95840 1.67617 1.14083 1.38741 0.98416 1.20405 0.95828 0.88409 0.93268 1.68456 1.10683 1.39225 0.98860 1.25424 0.89204 0.93009 0.96331 1.25265 0.91159 0.94035 0.97954 1.68658 1.08667 1.38513 0.98690 1.20020 1.04334 0.92715 0.95238 1.21876 0.86625 1.01589 0.88047 0.93203 0.89962 0.95603 0.91968 0.78402 0.74318 0.74509 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 2 C 0.22 11.71 2.56 29.85 0.08 11.78 16 3 H 0.01 0.81 7.16 -2.39 -0.02 0.79 16 4 C -0.55 -30.34 8.89 25.60 0.23 -30.12 16 5 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -51.90 11.34 21.45 0.24 -51.66 16 8 Si 0.98 42.21 29.54 68.60 2.03 44.23 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 12 O -0.35 -16.07 9.11 -56.21 -0.51 -16.58 16 13 C 0.51 21.17 7.88 70.33 0.55 21.73 16 14 O -0.54 -25.32 15.64 19.92 0.31 -25.01 16 15 C -0.17 -5.49 5.88 -20.01 -0.12 -5.60 16 16 C 0.21 6.52 10.76 85.43 0.92 7.44 16 17 N -0.48 -14.93 10.39 -192.72 -2.00 -16.93 16 18 C 0.26 7.35 7.60 134.96 1.03 8.38 16 19 N -0.46 -10.43 10.55 -193.08 -2.04 -12.47 16 20 C 0.14 1.49 11.21 85.14 0.95 2.44 16 21 C 0.09 0.96 11.22 85.14 0.96 1.91 16 22 N -0.43 -8.99 10.46 -187.99 -1.97 -10.96 16 23 C 0.00 0.02 6.59 40.34 0.27 0.28 16 24 C 0.05 1.35 9.68 23.06 0.22 1.57 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.08 4.46 6.09 -2.38 -0.01 4.44 16 27 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.20 5.53 7.59 -2.91 -0.02 5.50 16 30 H 0.24 -0.30 8.06 -2.91 -0.02 -0.33 16 31 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 32 H 0.17 4.78 7.70 -2.91 -0.02 4.76 16 Total: -1.00 -74.00 292.33 3.43 -70.56 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.17 Total: 4.19 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.20 Total: 14.61 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.76 Total: -92.01 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.20 Total: -41.59 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -74.00 3.43 -70.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760214650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.309 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds