Wall clock time and date at job start Mon Mar 30 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47363 * 101.56142 * 3 2 1 5 5 S 1.65596 * 120.00373 * 164.99818 * 4 3 2 6 6 O 1.42100 * 106.40403 * 178.53894 * 5 4 3 7 7 O 1.42102 * 106.40069 * 311.45992 * 5 4 3 8 8 N 1.65605 * 107.21886 * 64.99761 * 5 4 3 9 9 C 1.46963 * 120.59370 * 269.72412 * 8 5 4 10 10 C 1.53806 * 108.39865 * 124.75613 * 9 8 5 11 11 N 1.46965 * 108.57951 * 49.63736 * 10 9 8 12 12 C 1.36935 * 120.59607 * 124.67073 * 11 10 9 13 13 H 1.07999 * 120.00105 * 208.14868 * 12 11 10 14 14 C 1.38815 * 119.99965 * 28.14342 * 12 11 10 15 15 N 1.31619 * 120.00033 * 17.57516 * 14 12 11 16 16 Si 1.86801 * 119.99916 * 197.57894 * 14 12 11 17 17 H 1.48500 * 109.47434 * 59.99657 * 16 14 12 18 18 H 1.48500 * 109.47272 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46862 * 299.99783 * 16 14 12 20 20 C 1.46966 * 118.81074 * 304.64329 * 11 10 9 21 21 C 1.46963 * 120.59058 * 90.00120 * 8 5 4 22 22 H 4.40640 * 5.51412 * 180.02562 * 4 1 2 23 23 H 1.09001 * 109.47053 * 221.56236 * 3 2 1 24 24 H 1.09003 * 109.47522 * 341.55533 * 3 2 1 25 25 H 0.97001 * 119.99768 * 344.99344 * 4 3 2 26 26 H 1.08998 * 109.61103 * 244.53669 * 9 8 5 27 27 H 1.09000 * 109.61286 * 5.05312 * 9 8 5 28 28 H 1.09004 * 109.74658 * 289.84650 * 10 9 8 29 29 H 1.09002 * 109.53727 * 169.30097 * 10 9 8 30 30 H 0.96994 * 119.99870 * 179.97438 * 15 14 12 31 31 H 1.08996 * 109.61312 * 295.48704 * 20 11 10 32 32 H 1.09005 * 109.74999 * 175.05253 * 20 11 10 33 33 H 1.08992 * 109.61088 * 354.94703 * 21 8 5 34 34 H 1.09000 * 109.60718 * 115.46424 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2777 -1.3531 5 16 4.7161 0.7060 -1.5912 6 8 4.8807 0.8703 -2.9930 7 8 5.0000 1.7318 -0.6497 8 7 5.6463 -0.5946 -1.1604 9 6 6.1319 -0.7429 0.2188 10 6 5.6826 -2.1159 0.7467 11 7 6.0423 -3.1394 -0.2448 12 6 6.8114 -4.2149 0.1114 13 1 7.4398 -4.6964 -0.6232 14 6 6.7835 -4.6862 1.4168 15 7 5.7945 -4.3492 2.2172 16 14 8.1497 -5.7987 2.0375 17 1 9.4497 -5.0876 1.9406 18 1 7.8877 -6.1616 3.4535 19 1 8.1973 -7.0320 1.2117 20 6 5.5613 -2.9882 -1.6252 21 6 6.0060 -1.6181 -2.1519 22 1 -1.0500 0.0002 0.0001 23 1 3.0090 0.7698 0.6818 24 1 3.0099 -0.9740 0.3251 25 1 2.5310 0.2102 -2.1097 26 1 7.2200 -0.6811 0.2321 27 1 5.7105 0.0460 0.8418 28 1 4.6031 -2.1169 0.8983 29 1 6.1870 -2.3268 1.6896 30 1 5.7748 -4.6789 3.1291 31 1 4.4733 -3.0512 -1.6425 32 1 5.9833 -3.7750 -2.2506 33 1 5.5014 -1.4073 -3.0947 34 1 7.0854 -1.6171 -2.3034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761032165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:24 Heat of formation + Delta-G solvation = -10.552587 kcal Electronic energy + Delta-G solvation = -19895.775118 eV Core-core repulsion = 16764.225746 eV Total energy + Delta-G solvation = -3131.549371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.19725 -38.47563 -37.04215 -36.98129 -35.56556 -33.19638 -32.90511 -31.80233 -28.18810 -27.46893 -25.01462 -24.46124 -21.82762 -20.36983 -19.78712 -19.33242 -18.45827 -17.85365 -17.32668 -16.73421 -16.28858 -15.73350 -15.42066 -15.36260 -15.24218 -15.04627 -14.77742 -14.45167 -13.65352 -13.57944 -13.30150 -13.25732 -13.00636 -12.90803 -12.58348 -12.47621 -12.14865 -11.96981 -11.80149 -11.70803 -11.56444 -11.35157 -10.59599 -10.47225 -10.18229 -8.59256 -7.83966 -5.29404 -0.50916 1.50482 1.50862 1.53446 1.59225 1.85694 2.07809 2.53320 2.56487 3.20146 3.30601 3.44679 3.65814 3.82572 4.16035 4.31662 4.46983 4.48188 4.59640 4.65241 4.73014 4.77044 4.91854 5.06117 5.13842 5.27732 5.34317 5.61173 5.67295 5.77865 5.99584 6.41729 6.61671 7.17642 7.87494 8.39441 9.20739 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.006173 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.972365 B = 4534.724757 C = 5200.467969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.239 4.239 3 C 0.227 3.773 4 N -1.116 6.116 5 S 2.810 3.190 6 O -0.998 6.998 7 O -1.001 7.001 8 N -0.997 5.997 9 C 0.105 3.895 10 C 0.163 3.837 11 N -0.606 5.606 12 C -0.262 4.262 13 H 0.067 0.933 14 C -0.045 4.045 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.281 1.281 18 H -0.296 1.296 19 H -0.279 1.279 20 C 0.129 3.871 21 C 0.112 3.888 22 H 0.256 0.744 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.425 0.575 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.016 0.984 29 H 0.069 0.931 30 H 0.250 0.750 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 8.175 -5.735 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.241 4.241 3 C 0.102 3.898 4 N -0.878 5.878 5 S 2.818 3.182 6 O -0.982 6.982 7 O -0.985 6.985 8 N -0.838 5.838 9 C -0.022 4.022 10 C 0.036 3.964 11 N -0.330 5.330 12 C -0.392 4.392 13 H 0.084 0.916 14 C -0.241 4.241 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.207 1.207 18 H -0.222 1.222 19 H -0.205 1.205 20 C 0.002 3.998 21 C -0.014 4.014 22 H 0.273 0.727 23 H 0.120 0.880 24 H 0.104 0.896 25 H 0.260 0.740 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.598 8.982 -5.748 12.540 hybrid contribution 0.088 -1.224 0.470 1.314 sum -6.510 7.758 -5.277 11.420 Atomic orbital electron populations 1.25838 0.96670 0.99011 0.95837 1.23013 0.94558 1.02441 1.04077 1.18120 0.85795 1.02621 0.83290 1.55772 1.29510 1.88004 1.14511 1.01004 0.72386 0.72796 0.72001 1.93567 1.85880 1.86178 1.32561 1.93559 1.84478 1.55366 1.65053 1.57726 1.66373 1.41636 1.18030 1.22181 0.99936 0.99355 0.80706 1.21125 0.96654 0.85464 0.93201 1.44132 1.59914 1.23118 1.05797 1.19450 1.16924 1.07414 0.95423 0.91566 1.25685 0.99224 1.00438 0.98713 1.70125 1.30881 1.49349 1.07190 0.85419 0.79721 0.78992 0.76708 1.20675 1.22245 1.20470 1.21415 0.96491 0.95401 0.86468 1.21947 1.01429 0.88026 0.90036 0.72745 0.87993 0.89628 0.74003 0.91642 0.88755 0.96625 0.91320 0.94039 0.95837 0.91188 0.88052 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 19.25 74.32 1.43 -1.49 16 2 C -0.24 -5.73 13.49 31.13 0.42 -5.31 16 3 C 0.23 5.78 6.72 84.57 0.57 6.35 16 4 N -1.12 -27.73 6.03 -195.53 -1.18 -28.91 16 5 S 2.81 83.57 6.15 -56.49 -0.35 83.22 16 6 O -1.00 -32.84 16.83 -128.00 -2.15 -34.99 16 7 O -1.00 -34.24 16.29 -128.00 -2.09 -36.32 16 8 N -1.00 -31.87 3.32 -511.46 -1.70 -33.57 16 9 C 0.11 3.69 6.58 86.56 0.57 4.26 16 10 C 0.16 7.08 5.53 86.56 0.48 7.56 16 11 N -0.61 -28.08 2.97 -697.33 -2.07 -30.15 16 12 C -0.26 -13.54 9.58 84.03 0.80 -12.74 16 13 H 0.07 3.35 7.89 -2.91 -0.02 3.32 16 14 C -0.04 -2.36 4.90 84.86 0.42 -1.95 16 15 N -0.93 -51.76 11.20 21.65 0.24 -51.52 16 16 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 C 0.13 4.84 6.67 86.42 0.58 5.41 16 21 C 0.11 3.53 6.55 86.42 0.57 4.10 16 22 H 0.26 2.43 7.80 -4.42 -0.03 2.39 16 23 H 0.10 2.49 7.75 -2.39 -0.02 2.47 16 24 H 0.09 2.40 6.80 -2.39 -0.02 2.38 16 25 H 0.42 8.93 8.63 -96.75 -0.84 8.09 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 2.96 7.08 -2.39 -0.02 2.94 16 28 H 0.02 0.70 6.80 -2.38 -0.02 0.68 16 29 H 0.07 3.43 5.99 -2.39 -0.01 3.41 16 30 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 2.52 7.94 -2.38 -0.02 2.50 16 33 H 0.10 2.72 7.09 -2.39 -0.02 2.70 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.39 299.46 -1.15 -67.53 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.28 Total: 13.40 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.83 Total: 6.20 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -4.70 Total: -144.14 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -4.24 Total: -71.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 83.57 SS G_CDS: -0.35 Total: 83.22 kcal Total: -66.39 -1.15 -67.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761032165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.982 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds