Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.50703 * 109.47345 * 119.99711 * 2 1 3 5 5 H 1.08001 * 120.00024 * 119.99786 * 4 2 1 6 6 C 1.37877 * 119.99897 * 300.00231 * 4 2 1 7 7 N 1.31516 * 119.99880 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47125 * 59.99904 * 8 6 4 10 10 H 1.48497 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46858 * 299.99876 * 8 6 4 12 12 O 1.45203 * 109.47549 * 239.99891 * 2 1 3 13 13 C 1.34649 * 117.00147 * 89.99471 * 12 2 1 14 14 O 1.21402 * 119.99808 * 0.02562 * 13 12 2 15 15 C 1.48351 * 120.00196 * 180.02562 * 13 12 2 16 16 N 1.33512 * 119.22179 * 359.97438 * 15 13 12 17 17 N 1.28923 * 122.01783 * 179.35054 * 16 15 13 18 18 C 1.33821 * 119.74346 * 0.96050 * 17 16 15 19 19 C 1.40326 * 121.78191 * 179.10727 * 18 17 16 20 20 C 1.36189 * 119.62715 * 180.02562 * 19 18 17 21 21 C 1.39452 * 121.07444 * 359.97438 * 20 19 18 22 22 C 1.36134 * 121.01168 * 359.97438 * 21 20 19 23 23 C 1.40520 * 119.56086 * 0.30207 * 22 21 20 24 24 N 1.32082 * 119.22037 * 180.02562 * 15 13 12 25 25 H 1.08999 * 109.47147 * 299.99892 * 1 2 3 26 26 H 1.08996 * 109.46887 * 60.00356 * 1 2 3 27 27 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99437 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.18394 * 0.02562 * 19 18 17 30 30 H 1.08001 * 119.46799 * 180.02562 * 20 19 18 31 31 H 1.08003 * 119.49124 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.21551 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 8 2.0141 -0.6845 -1.1855 13 6 2.2178 0.0663 -2.2846 14 8 1.9977 1.2598 -2.2537 15 6 2.7112 -0.5650 -3.5331 16 7 2.9486 -1.8787 -3.5496 17 7 3.3663 -2.4846 -4.6081 18 6 3.5915 -1.7866 -5.7274 19 6 4.0638 -2.3993 -6.8982 20 6 4.2783 -1.6465 -8.0126 21 6 4.0358 -0.2732 -8.0112 22 6 3.5764 0.3568 -6.8953 23 6 3.3486 -0.3857 -5.7242 24 7 2.9061 0.1862 -4.6020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7089 1.1615 3.4844 29 1 4.2560 -3.4619 -6.9153 30 1 4.6415 -2.1208 -8.9124 31 1 4.2144 0.2992 -8.9096 32 1 3.3925 1.4209 -6.9087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810583594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = 19.449232 kcal Electronic energy + Delta-G solvation = -19672.068626 eV Core-core repulsion = 16406.376280 eV Total energy + Delta-G solvation = -3265.692346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19307 -39.57251 -38.28550 -36.10119 -35.24431 -33.32495 -32.31208 -31.29488 -29.62569 -26.83494 -25.85054 -25.30854 -22.91243 -22.59897 -20.54645 -19.51483 -19.01709 -17.47398 -16.57235 -16.51936 -16.23515 -15.66701 -15.28906 -14.85850 -14.66723 -14.52177 -13.23955 -13.15643 -12.85744 -12.62409 -12.40662 -12.35307 -12.14099 -11.90403 -11.63108 -11.25543 -11.06337 -10.85474 -10.41476 -10.31223 -10.11961 -9.92129 -9.62746 -9.50780 -9.10769 -8.95035 -8.49286 -6.18210 -4.25003 -0.55861 -0.12179 1.31408 2.05680 2.61747 2.97158 3.29508 3.29631 3.32444 3.36723 3.60609 3.66279 4.00908 4.26766 4.29482 4.41483 4.58143 4.76027 5.07577 5.15103 5.28450 5.37560 5.52200 5.59797 5.76826 6.08787 6.53285 6.62548 6.84246 6.87113 7.00626 7.52065 7.68020 7.83730 8.05125 8.09960 8.46836 8.84121 9.39917 10.89399 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.040804 B = 0.003819 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.038194 B = 7330.475845 C = 7751.612485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.051 0.949 4 C -0.521 4.521 5 H 0.072 0.928 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.915 3.085 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 O -0.325 6.325 13 C 0.526 3.474 14 O -0.475 6.475 15 C 0.247 3.753 16 N -0.199 5.199 17 N -0.145 5.145 18 C 0.018 3.982 19 C -0.066 4.066 20 C -0.092 4.092 21 C -0.076 4.076 22 C -0.084 4.084 23 C 0.130 3.870 24 N -0.396 5.396 25 H 0.103 0.897 26 H 0.017 0.983 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -3.902 -21.878 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.559 4.559 5 H 0.090 0.910 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.742 3.258 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 O -0.238 6.238 13 C 0.363 3.637 14 O -0.360 6.360 15 C -0.023 4.023 16 N -0.060 5.060 17 N -0.008 5.008 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.009 4.009 24 N -0.119 5.119 25 H 0.121 0.879 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.607 -3.792 -20.716 21.794 hybrid contribution 0.342 0.195 0.105 0.407 sum 5.948 -3.597 -20.611 21.752 Atomic orbital electron populations 1.22196 0.97111 1.00521 1.01611 1.20879 0.91721 0.94082 0.77068 0.93156 1.20984 1.32715 1.13683 0.88511 0.90954 1.24883 0.94880 0.95096 0.99044 1.69890 1.35987 1.22511 1.24390 0.86277 0.79238 0.79564 0.80747 1.19930 1.21050 1.19817 1.86665 1.74790 1.42353 1.20038 1.19564 0.76267 0.84662 0.83159 1.90829 1.46485 1.15128 1.83547 1.23540 0.96379 0.88738 0.93683 1.74329 1.05664 1.08402 1.17613 1.74660 1.02914 1.28492 0.94767 1.21101 1.00145 0.93316 0.96905 1.20818 0.96810 1.01416 0.89748 1.21226 0.97581 0.93927 0.98587 1.21234 0.95422 0.94819 0.98358 1.20939 0.98356 1.01239 0.89804 1.19741 0.95845 0.91577 0.93706 1.69038 1.07214 1.37653 0.98041 0.87892 0.96403 0.94042 0.92271 0.83104 0.83793 0.83729 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.33 37.16 0.35 -3.69 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.18 16 5 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.92 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 O -0.32 -8.23 9.66 -40.35 -0.39 -8.62 16 13 C 0.53 12.27 7.96 34.89 0.28 12.55 16 14 O -0.48 -11.88 16.12 -19.19 -0.31 -12.19 16 15 C 0.25 4.94 7.64 -156.56 -1.20 3.74 16 16 N -0.20 -3.82 11.32 32.09 0.36 -3.46 16 17 N -0.14 -2.33 11.68 32.28 0.38 -1.95 16 18 C 0.02 0.23 6.68 -84.70 -0.57 -0.34 16 19 C -0.07 -0.54 10.00 -39.53 -0.40 -0.93 16 20 C -0.09 -0.49 9.95 -39.87 -0.40 -0.89 16 21 C -0.08 -0.43 9.95 -39.89 -0.40 -0.82 16 22 C -0.08 -0.77 10.01 -39.48 -0.40 -1.16 16 23 C 0.13 1.79 6.61 -84.77 -0.56 1.23 16 24 N -0.40 -7.03 10.22 -9.01 -0.09 -7.12 16 25 H 0.10 2.79 6.07 -51.93 -0.32 2.48 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 31 H 0.14 0.32 8.06 -52.48 -0.42 -0.11 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 293.94 15.07 4.43 4.43 Total: -1.00 -33.06 293.94 -6.54 -39.60 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -2.77 Total: -4.25 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -3.75 Total: 1.99 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 1.28 Total: -37.28 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.70 Total: -20.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.06 -6.54 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.051 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds