Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.50703 * 109.47345 * 119.99711 * 2 1 3 5 5 H 1.08001 * 120.00024 * 119.99786 * 4 2 1 6 6 C 1.37877 * 119.99897 * 300.00231 * 4 2 1 7 7 N 1.31516 * 119.99880 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47125 * 59.99904 * 8 6 4 10 10 H 1.48497 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46858 * 299.99876 * 8 6 4 12 12 O 1.45203 * 109.47549 * 239.99891 * 2 1 3 13 13 C 1.34649 * 117.00147 * 89.99471 * 12 2 1 14 14 O 1.21402 * 119.99808 * 0.02562 * 13 12 2 15 15 C 1.48351 * 120.00196 * 180.02562 * 13 12 2 16 16 N 1.33512 * 119.22179 * 359.97438 * 15 13 12 17 17 N 1.28923 * 122.01783 * 179.35054 * 16 15 13 18 18 C 1.33821 * 119.74346 * 0.96050 * 17 16 15 19 19 C 1.40326 * 121.78191 * 179.10727 * 18 17 16 20 20 C 1.36189 * 119.62715 * 180.02562 * 19 18 17 21 21 C 1.39452 * 121.07444 * 359.97438 * 20 19 18 22 22 C 1.36134 * 121.01168 * 359.97438 * 21 20 19 23 23 C 1.40520 * 119.56086 * 0.30207 * 22 21 20 24 24 N 1.32082 * 119.22037 * 180.02562 * 15 13 12 25 25 H 1.08999 * 109.47147 * 299.99892 * 1 2 3 26 26 H 1.08996 * 109.46887 * 60.00356 * 1 2 3 27 27 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99437 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.18394 * 0.02562 * 19 18 17 30 30 H 1.08001 * 119.46799 * 180.02562 * 20 19 18 31 31 H 1.08003 * 119.49124 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.21551 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 8 2.0141 -0.6845 -1.1855 13 6 2.2178 0.0663 -2.2846 14 8 1.9977 1.2598 -2.2537 15 6 2.7112 -0.5650 -3.5331 16 7 2.9486 -1.8787 -3.5496 17 7 3.3663 -2.4846 -4.6081 18 6 3.5915 -1.7866 -5.7274 19 6 4.0638 -2.3993 -6.8982 20 6 4.2783 -1.6465 -8.0126 21 6 4.0358 -0.2732 -8.0112 22 6 3.5764 0.3568 -6.8953 23 6 3.3486 -0.3857 -5.7242 24 7 2.9061 0.1862 -4.6020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7089 1.1615 3.4844 29 1 4.2560 -3.4619 -6.9153 30 1 4.6415 -2.1208 -8.9124 31 1 4.2144 0.2992 -8.9096 32 1 3.3925 1.4209 -6.9087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -3.355673 kcal Electronic energy + Delta-G solvation = -19673.057521 eV Core-core repulsion = 16406.376280 eV Total energy + Delta-G solvation = -3266.681241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.30096 -41.38246 -39.18305 -37.92463 -36.52180 -35.42511 -33.37090 -32.17025 -31.64219 -27.99640 -27.48244 -26.97196 -24.27486 -23.68323 -22.34077 -20.68679 -20.29408 -18.99392 -18.46476 -17.91318 -17.65331 -17.13664 -16.53013 -16.48581 -15.97738 -15.38248 -15.03778 -14.41249 -14.13849 -13.99571 -13.73694 -13.66737 -13.39684 -13.20637 -13.14771 -13.04927 -12.84289 -12.51500 -12.43806 -12.20059 -11.94298 -11.72011 -11.09380 -10.80491 -10.72727 -10.62881 -9.87317 -8.31633 -6.48914 -1.55816 -1.18936 0.45944 0.82338 1.06149 1.42574 1.46305 1.55275 1.72041 2.17292 2.35406 2.57593 2.59887 2.97789 3.01550 3.20396 3.62955 3.73912 3.95734 4.17905 4.36240 4.41176 4.67505 4.71784 4.73513 4.80035 4.95565 5.02053 5.15871 5.38600 5.46671 5.51853 5.60034 5.73354 5.93774 6.43611 6.66371 6.91847 7.21277 8.76433 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.040804 B = 0.003819 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.038194 B = 7330.475845 C = 7751.612485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.215 3.785 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.987 3.013 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.264 1.264 12 O -0.334 6.334 13 C 0.528 3.472 14 O -0.506 6.506 15 C 0.216 3.784 16 N -0.238 5.238 17 N -0.164 5.164 18 C 0.015 3.985 19 C -0.080 4.080 20 C -0.052 4.052 21 C -0.035 4.035 22 C -0.105 4.105 23 C 0.112 3.888 24 N -0.418 5.418 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.273 0.727 29 H 0.175 0.825 30 H 0.201 0.799 31 H 0.199 0.801 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.682 -5.080 -25.752 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.034 0.966 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.809 3.191 9 H -0.194 1.194 10 H -0.198 1.198 11 H -0.188 1.188 12 O -0.248 6.248 13 C 0.367 3.633 14 O -0.392 6.392 15 C -0.053 4.053 16 N -0.098 5.098 17 N -0.024 5.024 18 C -0.119 4.119 19 C -0.101 4.101 20 C -0.073 4.073 21 C -0.057 4.057 22 C -0.125 4.125 23 C -0.028 4.028 24 N -0.142 5.142 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.192 0.808 30 H 0.218 0.782 31 H 0.216 0.784 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.272 -4.996 -24.576 26.112 hybrid contribution -0.026 0.585 0.764 0.963 sum 7.246 -4.411 -23.812 25.277 Atomic orbital electron populations 1.22022 0.96128 1.00750 1.01222 1.20661 0.92534 0.92464 0.78125 0.96560 1.21227 1.33917 1.14169 0.89640 0.91440 1.25837 0.94567 0.95655 1.02000 1.70000 1.36280 1.23453 1.25526 0.85181 0.78765 0.78628 0.76519 1.19368 1.19796 1.18824 1.86644 1.75263 1.42504 1.20392 1.20095 0.75182 0.84431 0.83610 1.90775 1.47997 1.16224 1.84210 1.22618 1.00286 0.89451 0.92973 1.74187 1.08030 1.07962 1.19607 1.74484 1.03756 1.28816 0.95391 1.21723 0.99543 0.93265 0.97378 1.21276 0.97086 1.03104 0.88682 1.21977 0.92885 0.93475 0.98912 1.21962 0.90243 0.95269 0.98251 1.21278 0.99939 1.01969 0.89296 1.20453 0.95955 0.92597 0.93748 1.68901 1.08120 1.38337 0.98807 0.89252 0.95649 0.93359 0.91727 0.80767 0.78174 0.78417 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.80 9.33 71.98 0.67 -7.13 16 2 C 0.21 12.60 2.56 29.85 0.08 12.68 16 3 H 0.02 1.06 7.16 -2.39 -0.02 1.04 16 4 C -0.55 -32.98 8.90 25.60 0.23 -32.76 16 5 H 0.07 3.99 7.81 -2.91 -0.02 3.96 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.99 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 12 O -0.33 -18.33 9.66 -55.58 -0.54 -18.87 16 13 C 0.53 26.84 7.96 70.52 0.56 27.41 16 14 O -0.51 -27.50 16.12 20.15 0.32 -27.17 16 15 C 0.22 9.38 7.64 137.42 1.05 10.43 16 16 N -0.24 -9.85 11.32 -52.39 -0.59 -10.44 16 17 N -0.16 -5.45 11.68 -51.79 -0.60 -6.06 16 18 C 0.02 0.38 6.68 40.33 0.27 0.65 16 19 C -0.08 -0.96 10.00 22.30 0.22 -0.74 16 20 C -0.05 -0.17 9.95 22.09 0.22 0.05 16 21 C -0.03 -0.15 9.95 22.07 0.22 0.07 16 22 C -0.11 -1.59 10.01 22.34 0.22 -1.36 16 23 C 0.11 3.03 6.61 40.42 0.27 3.30 16 24 N -0.42 -15.70 10.22 -182.41 -1.86 -17.57 16 25 H 0.09 5.08 6.07 -2.39 -0.01 5.07 16 26 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 29 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.20 -1.30 8.06 -2.91 -0.02 -1.33 16 31 H 0.20 -0.99 8.06 -2.91 -0.02 -1.02 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -81.42 293.94 4.62 -76.80 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: 1.16 Total: -3.75 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 4.46 Total: 14.16 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.82 Total: -87.44 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.21 Total: -46.04 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.42 4.62 -76.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.448 kcal (2) G-P(sol) polarization free energy of solvation -81.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds