Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00040 * 2 1 4 4 C 1.53009 * 109.47368 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46793 * 64.99767 * 4 3 2 6 6 C 1.36944 * 120.00427 * 264.43189 * 5 4 3 7 7 H 1.08003 * 119.99901 * 146.16789 * 6 5 4 8 8 C 1.38810 * 119.99753 * 326.17770 * 6 5 4 9 9 N 1.31619 * 120.00092 * 337.61719 * 8 6 5 10 10 Si 1.86801 * 119.99910 * 157.62166 * 8 6 5 11 11 H 1.48495 * 109.47176 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47144 * 119.99461 * 10 8 6 13 13 H 1.48506 * 109.46911 * 239.99551 * 10 8 6 14 14 C 1.46504 * 120.00106 * 84.44014 * 5 4 3 15 15 C 1.50700 * 109.47348 * 89.99318 * 14 5 4 16 16 N 1.29485 * 126.14846 * 90.02495 * 15 14 5 17 17 N 1.26244 * 116.57449 * 179.97438 * 16 15 14 18 18 C 1.29776 * 117.69196 * 0.02562 * 17 16 15 19 19 O 1.35584 * 125.65941 * 179.97438 * 18 17 16 20 20 C 1.42901 * 116.99698 * 0.02562 * 19 18 17 21 21 S 1.71318 * 108.69069 * 359.72340 * 18 17 16 22 22 H 1.09004 * 109.47061 * 59.99730 * 1 2 3 23 23 H 1.08998 * 109.47512 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47103 * 299.99923 * 1 2 3 25 25 H 1.09002 * 109.47363 * 60.00166 * 3 2 1 26 26 H 1.08994 * 109.47137 * 299.99842 * 3 2 1 27 27 H 1.09007 * 109.46583 * 305.00172 * 4 3 2 28 28 H 1.08994 * 109.47146 * 185.00170 * 4 3 2 29 29 H 0.97001 * 119.99869 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.46422 * 329.99315 * 14 5 4 31 31 H 1.09004 * 109.47158 * 210.00076 * 14 5 4 32 32 H 1.08998 * 109.47159 * 179.97438 * 20 19 18 33 33 H 1.09001 * 109.47022 * 300.00439 * 20 19 18 34 34 H 1.09008 * 109.47054 * 59.99910 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2065 -0.7844 -1.3046 7 1 3.9949 -1.3341 -2.2098 8 6 4.7124 -1.4451 -0.1935 9 7 5.3729 -0.7747 0.7266 10 14 4.4560 -3.2857 -0.0044 11 1 3.6873 -3.8003 -1.1661 12 1 5.7748 -3.9655 0.0574 13 1 3.7014 -3.5544 1.2462 14 6 4.1689 1.3871 -2.4494 15 6 5.5899 1.8870 -2.4913 16 7 6.5933 1.2905 -3.0516 17 7 7.7102 1.8743 -2.9783 18 6 7.7568 3.0108 -2.3535 19 8 8.8652 3.7719 -2.1787 20 6 10.0860 3.2766 -2.7323 21 16 6.1840 3.3936 -1.7922 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8463 -0.8899 27 1 3.8514 0.5682 0.8410 28 1 3.9785 2.1765 0.0889 29 1 5.7268 -1.2365 1.5028 30 1 3.4857 2.2360 -2.4208 31 1 3.9678 0.7888 -3.3381 32 1 10.8919 3.9797 -2.5219 33 1 10.3211 2.3100 -2.2869 34 1 9.9760 3.1626 -3.8108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930683518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = -7.818674 kcal Electronic energy + Delta-G solvation = -19250.321766 eV Core-core repulsion = 16118.890946 eV Total energy + Delta-G solvation = -3131.430820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08497 -39.64462 -38.82795 -37.19908 -33.79327 -32.20426 -30.41902 -29.15018 -28.09019 -27.06580 -25.92172 -24.60528 -22.54855 -21.16224 -20.44567 -18.73062 -18.41316 -17.65204 -17.27449 -16.78400 -16.49174 -16.05656 -15.74616 -15.56569 -15.40559 -14.96251 -14.82329 -14.21532 -13.54452 -13.30434 -13.09822 -12.79506 -12.77242 -12.66461 -12.54425 -12.28930 -12.04503 -11.94160 -11.52555 -11.48557 -10.95915 -10.56999 -10.43330 -10.28469 -9.99811 -8.70736 -7.87120 -5.36517 -0.42404 -0.25360 0.44702 1.46037 1.49089 1.58100 1.71255 2.28218 2.53991 3.23238 3.29139 3.45225 3.65094 3.83333 4.28722 4.36865 4.40666 4.48705 4.60834 4.62846 4.69723 4.77087 4.82487 4.84283 4.89421 4.97249 4.99251 5.68527 5.70779 5.78157 6.39806 6.69578 7.13174 7.72914 7.78435 8.24161 9.12253 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.006256 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.193238 B = 4474.441505 C = 5364.581218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.135 3.865 5 N -0.562 5.562 6 C -0.233 4.233 7 H 0.059 0.941 8 C -0.028 4.028 9 N -0.913 5.913 10 Si 0.952 3.048 11 H -0.268 1.268 12 H -0.301 1.301 13 H -0.289 1.289 14 C 0.209 3.791 15 C 0.016 3.984 16 N -0.269 5.269 17 N -0.357 5.357 18 C 0.151 3.849 19 O -0.281 6.281 20 C 0.031 3.969 21 S 0.166 5.834 22 H 0.047 0.953 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.050 0.950 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 11.152 -3.335 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.009 3.991 5 N -0.280 5.280 6 C -0.365 4.365 7 H 0.077 0.923 8 C -0.225 4.225 9 N -0.558 5.558 10 Si 0.782 3.218 11 H -0.192 1.192 12 H -0.229 1.229 13 H -0.216 1.216 14 C 0.078 3.922 15 C -0.269 4.269 16 N -0.106 5.106 17 N -0.210 5.210 18 C -0.167 4.167 19 O -0.186 6.186 20 C -0.067 4.067 21 S 0.406 5.594 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.069 0.931 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.166 11.002 -3.226 11.668 hybrid contribution 0.524 -1.177 0.350 1.335 sum -1.643 9.825 -2.876 10.368 Atomic orbital electron populations 1.22820 0.81353 1.02642 1.00202 1.88121 1.19767 1.28775 1.95257 1.23170 0.95592 0.84192 0.99370 1.21135 0.90436 0.96692 0.90822 1.44285 1.72671 1.03564 1.07467 1.19169 1.34689 0.83465 0.99128 0.92286 1.25593 0.96823 1.00960 0.99167 1.70086 1.36609 1.36444 1.12647 0.85448 0.76536 0.82033 0.77808 1.19216 1.22920 1.21575 1.20236 0.83702 0.95612 0.92673 1.32551 1.04784 0.91848 0.97709 1.71022 0.94119 1.25071 1.20425 1.71270 1.19949 1.07096 1.22669 1.27513 0.95614 0.94191 0.99361 1.86272 1.15007 1.43026 1.74313 1.23358 0.82274 1.01775 0.99246 1.84255 0.96823 1.22583 1.55729 0.93462 0.90098 0.93606 0.92933 0.92979 0.90796 0.92852 0.94223 0.87711 0.89598 0.83786 0.93137 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.82 10.44 -148.98 -1.56 -17.38 16 3 C 0.06 1.92 6.28 71.99 0.45 2.37 16 4 C 0.13 5.76 5.63 86.38 0.49 6.25 16 5 N -0.56 -25.72 2.39 -706.32 -1.69 -27.41 16 6 C -0.23 -12.43 9.28 84.03 0.78 -11.65 16 7 H 0.06 3.21 7.92 -2.91 -0.02 3.19 16 8 C -0.03 -1.55 4.91 84.86 0.42 -1.14 16 9 N -0.91 -53.03 11.34 21.65 0.25 -52.79 16 10 Si 0.95 46.31 29.61 68.60 2.03 48.34 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 C 0.21 7.94 6.31 85.63 0.54 8.48 16 15 C 0.02 0.65 7.38 88.45 0.65 1.31 16 16 N -0.27 -12.42 11.65 -47.69 -0.56 -12.97 16 17 N -0.36 -15.46 10.94 -175.53 -1.92 -17.38 16 18 C 0.15 5.67 8.25 130.55 1.08 6.75 16 19 O -0.28 -8.86 10.56 -88.93 -0.94 -9.80 16 20 C 0.03 0.73 10.67 113.37 1.21 1.94 16 21 S 0.17 5.61 23.31 -56.49 -1.32 4.30 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 27 H 0.07 3.83 5.34 -2.38 -0.01 3.82 16 28 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.10 3.09 8.04 -2.39 -0.02 3.07 16 31 H 0.09 3.26 8.04 -2.38 -0.02 3.24 16 32 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -69.31 312.18 2.26 -67.05 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.10 Total: 1.76 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.86 Total: 16.29 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.92 Total: -110.56 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -2.49 Total: -27.18 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.32 Total: 4.30 kcal Total: -69.31 2.26 -67.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930683518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.231 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds